ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5f23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY136627.1| Hordeum vulgare subsp. vulgare plasma membrane P-... 151 3e-34
2emb|AJ344078.1|HVU344078 Hordeum vulgare partial mRNA for plasma... 151 3e-34
3emb|AJ295612.1|HVU295612 Hordeum vulgare partial mRNA for plasma... 151 3e-34
4emb|AJ222786.1|HVJ222786 Hordeum vulgare mRNA for H(+)-transport... 151 3e-34
5emb|Y09815.1|TAPSB5 T.aestivum mRNA for transmembrane proton pum... 143 8e-32
6gb|AY829002.2| Triticum aestivum plasma membrane H+-ATPase gene,... 131 3e-28
7gb|AY543630.1| Triticum aestivum plasma membrane H+-ATPase (ha1)... 131 3e-28
8gb|AF384148.1|AF384148 Triticum aestivum H+-ATPase mRNA, partial... 131 3e-28
9ref|XM_474175.1| Oryza sativa (japonica cultivar-group), predic... 111 3e-22
10emb|AJ440218.1|OSA440218 Oryza sativa a7 gene for plasma membran... 111 3e-22
11gb|AY224445.1| Oryza sativa (japonica cultivar-group) isolate 23... 111 3e-22
12dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 111 3e-22
13emb|AL442117.1|H0421H08 Oryza sativa genomic DNA, chromosome X, ... 111 3e-22
14dbj|AK105082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-22
15dbj|AK100435.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-22
16dbj|AK073066.1| Oryza sativa (japonica cultivar-group) cDNA clon... 111 3e-22
17emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4,... 111 3e-22
18emb|AJ539534.1|ZMA539534 Zea mays partial mRNA for proton-export... 56 1e-05
19emb|X85805.1|ZMPMHATP Z.mays mRNA for plasma membrane H+ ATPase 48 0.004
20gb|AF480431.1| Zea mays plasma membrane H+ ATPase-like gene, par... 48 0.004
21emb|AJ441084.1|ZMA441084 Zea mays partial mRNA for proton-export... 48 0.004
22gb|AY109425.1| Zea mays CL1965_1 mRNA sequence 46 0.014
23emb|AJ440001.1|OSA440001 Oryza sativa (japonica cultivar-group) ... 42 0.22
24dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.22
25emb|AL928743.1|CNS08CBG Oryza sativa chromosome 12, . BAC OSJNBb... 42 0.22
26dbj|AK071252.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.22
27dbj|AK067535.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 0.22
28gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 42 0.22
29emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa... 42 0.22
30emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119... 42 0.22
31gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosom... 40 0.86
32ref|XM_521106.1| PREDICTED: Pan troglodytes similar to GWSC6486 ... 38 3.4
33gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome... 38 3.4
34gb|BC012996.2| Homo sapiens PDZ domain containing 11, mRNA (cDNA... 38 3.4
35ref|XM_419805.1| PREDICTED: Gallus gallus similar to CDNA sequen... 38 3.4
36gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome 38 3.4
37ref|NM_138467.1| Homo sapiens chromosome 1 open reading frame 17... 38 3.4
38gb|AC091611.5| Homo sapiens chromosome 1 clone RP11-369L17, comp... 38 3.4
39emb|BX647591.1|HSM807737 Homo sapiens mRNA; cDNA DKFZp313J0833 (... 38 3.4
40emb|BX897746.7| Zebrafish DNA sequence from clone DKEY-112E1 in ... 38 3.4
41gb|BC071765.1| Homo sapiens chromosome 1 open reading frame 171,... 38 3.4
42gb|BC032341.2| Homo sapiens chromosome 1 open reading frame 171,... 38 3.4
43emb|BX537725.1|HSM805804 Homo sapiens mRNA; cDNA DKFZp686O17275 ... 38 3.4
44gb|AC116630.4| Homo sapiens BAC clone RP11-395J1 from 4, complet... 38 3.4
45dbj|AK098237.1| Homo sapiens cDNA FLJ40918 fis, clone UTERU2005593 38 3.4
46emb|CR617954.1| full-length cDNA clone CS0DD004YI23 of Neuroblas... 38 3.4
47emb|CR593661.1| full-length cDNA clone CS0DC004YB15 of Neuroblas... 38 3.4
48gb|AF151061.1|AF151061 Homo sapiens HSPC227 mRNA, complete cds 38 3.4
49ref|NM_016484.3| Homo sapiens PDZ domain containing 11 (PDZD11),... 38 3.4
50emb|BX934207.2| Gallus gallus finished cDNA, clone ChEST446m24 38 3.4
51dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 38 3.4
52emb|BX005043.8| Zebrafish DNA sequence from clone DKEY-3E19 in l... 38 3.4
53dbj|AK024746.1| Homo sapiens cDNA: FLJ21093 fis, clone CAS03791,... 38 3.4
54emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chro... 38 3.4
55gb|BC089433.1| Homo sapiens PDZ domain containing 11, mRNA (cDNA... 38 3.4
56gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 38 3.4
57emb|AL357752.19| Human DNA sequence from clone RP13-26D14 on chr... 38 3.4
58dbj|AP006139.1| Lotus japonicus genomic DNA, chromosome 3, clone... 38 3.4
59gb|M80492.1|TOBPMA2A Nicotiana plumbaginifolia plasma-membrane H... 38 3.4
60gb|M27888.1|TOBATPASA N.plumbaginifolia H+-translocating ATPase ... 38 3.4 
>gb|AY136627.1| Hordeum vulgare subsp. vulgare plasma membrane P-type proton pump
            ATPase (Ha1) mRNA, complete cds
          Length = 3446

 Score =  151 bits (76), Expect = 3e-34
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 2751 ttgtcccaggccctgccactcagcacaaatcggatgaagaacttgaaaatgtcaagtggg 2692

                                  
Query: 61   aagtanaacacaatgctgaaga 82
            ||||| ||||||||||||||||
Sbjct: 2691 aagtagaacacaatgctgaaga 2670
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>emb|AJ344078.1|HVU344078 Hordeum vulgare partial mRNA for plasma membrane H+-ATPase (ha1 gene)
          Length = 2280

 Score =  151 bits (76), Expect = 3e-34
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1608 ttgtcccaggccctgccactcagcacaaatcggatgaagaacttgaaaatgtcaagtggg 1549

                                  
Query: 61   aagtanaacacaatgctgaaga 82
            ||||| ||||||||||||||||
Sbjct: 1548 aagtagaacacaatgctgaaga 1527
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>emb|AJ295612.1|HVU295612 Hordeum vulgare partial mRNA for plasma membrane proton ATPase
           (PPA1 gene)
          Length = 1049

 Score =  151 bits (76), Expect = 3e-34
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 816 ttgtcccaggccctgccactcagcacaaatcggatgaagaacttgaaaatgtcaagtggg 757

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 756 aagtagaacacaatgctgaaga 735
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>emb|AJ222786.1|HVJ222786 Hordeum vulgare mRNA for H(+)-transporting ATPase-like protein,
          clone RG135
          Length = 350

 Score =  151 bits (76), Expect = 3e-34
 Identities = 80/82 (97%)
 Strand = Plus / Minus

                                                                      
Query: 1  ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
          |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 88 ttgtcccaggccctgccactcagcacaaatcggatgaagaacttgaaaatgtcaagtggg 29

                                
Query: 61 aagtanaacacaatgctgaaga 82
          ||||| ||||||||||||||||
Sbjct: 28 aagtagaacacaatgctgaaga 7
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>emb|Y09815.1|TAPSB5 T.aestivum mRNA for transmembrane proton pump, partial
          Length = 863

 Score =  143 bits (72), Expect = 8e-32
 Identities = 79/82 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 295 ttgtcccaggcccttccactcagcacaaatcggatgaagaacttgaaaatgtcaagtggg 236

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 235 aagtagaacacaatgctgaaga 214
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>gb|AY829002.2| Triticum aestivum plasma membrane H+-ATPase gene, promoter region and
            complete cds
          Length = 6132

 Score =  131 bits (66), Expect = 3e-28
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 5624 ttgtcccaggcccttccactcagcacaaatcggatgaagaacttgaaaatgtcgagtggg 5565

                                
Query: 61   aagtanaacacaatgctgaa 80
            ||||| ||||||||||||||
Sbjct: 5564 aagtagaacacaatgctgaa 5545
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>gb|AY543630.1| Triticum aestivum plasma membrane H+-ATPase (ha1) mRNA, complete cds
          Length = 2856

 Score =  131 bits (66), Expect = 3e-28
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 2555 ttgtcccaggcccttccactcagcacaaatcggatgaagaacttgaaaatgtcgagtggg 2496

                                
Query: 61   aagtanaacacaatgctgaa 80
            ||||| ||||||||||||||
Sbjct: 2495 aagtagaacacaatgctgaa 2476
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>gb|AF384148.1|AF384148 Triticum aestivum H+-ATPase mRNA, partial cds
          Length = 437

 Score =  131 bits (66), Expect = 3e-28
 Identities = 76/80 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
           |||||||||||||| ||||||| |||||||||||||||||||||||||||||| ||||||
Sbjct: 110 ttgtcccaggcccttccactcagcacaaatcggatgaagaacttgaaaatgtcgagtggg 51

                               
Query: 61  aagtanaacacaatgctgaa 80
           ||||| ||||||||||||||
Sbjct: 50  aagtagaacacaatgctgaa 31
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>ref|XM_474175.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2856

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 2555 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 2496

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| ||||||||||||
Sbjct: 2495 aagtagaacacaatgctg 2478
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>emb|AJ440218.1|OSA440218 Oryza sativa a7 gene for plasma membrane H+-ATPase
          Length = 5004

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 4468 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 4409

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| ||||||||||||
Sbjct: 4408 aagtagaacacaatgctg 4391
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>gb|AY224445.1| Oryza sativa (japonica cultivar-group) isolate 23022 plasma membrane
            H+-ATPase-like protein mRNA, partial cds
          Length = 1512

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 1211 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 1152

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| ||||||||||||
Sbjct: 1151 aagtagaacacaatgctg 1134
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 1        ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
                |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 33497715 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 33497656

                                  
Query: 61       aagtanaacacaatgctg 78
                ||||| ||||||||||||
Sbjct: 33497655 aagtagaacacaatgctg 33497638
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>emb|AL442117.1|H0421H08 Oryza sativa genomic DNA, chromosome X, BAC clone: H0421H08, complete
             sequence
          Length = 55574

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                         
Query: 1     ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
             |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 11272 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 11213

                               
Query: 61    aagtanaacacaatgctg 78
             ||||| ||||||||||||
Sbjct: 11212 aagtagaacacaatgctg 11195
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>dbj|AK105082.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-C08, full
            insert sequence
          Length = 2062

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 1416 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 1357

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| ||||||||||||
Sbjct: 1356 aagtagaacacaatgctg 1339
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>dbj|AK100435.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088J16, full
            insert sequence
          Length = 3560

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 2861 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 2802

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| ||||||||||||
Sbjct: 2801 aagtagaacacaatgctg 2784
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>dbj|AK073066.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033023L01, full
            insert sequence
          Length = 2444

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 1790 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 1731

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| ||||||||||||
Sbjct: 1730 aagtagaacacaatgctg 1713
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>emb|AL606685.3|OSJN00090 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0071I13,
             complete sequence
          Length = 152264

 Score =  111 bits (56), Expect = 3e-22
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                         
Query: 1     ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
             |||||||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||
Sbjct: 74004 ttgtcccaggcccttccactcagcacaaagcggatgaagaacttgaagatgtcaagaggg 73945

                               
Query: 61    aagtanaacacaatgctg 78
             ||||| ||||||||||||
Sbjct: 73944 aagtagaacacaatgctg 73927
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>emb|AJ539534.1|ZMA539534 Zea mays partial mRNA for proton-exporting ATPase (mha4 gene)
          Length = 1359

 Score = 56.0 bits (28), Expect = 1e-05
 Identities = 65/78 (83%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
           |||||||| |||||||| || | ||| || ||||||||||||||||  | ||| || |||
Sbjct: 638 ttgtcccatgccctgccgctgagcacgaagcggatgaagaacttgatcaggtccagaggg 579

                             
Query: 61  aagtanaacacaatgctg 78
           ||||| ||||| ||||||
Sbjct: 578 aagtagaacacgatgctg 561
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>emb|X85805.1|ZMPMHATP Z.mays mRNA for plasma membrane H+ ATPase
          Length = 3369

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||| |||||||| || | ||| || ||||||||||||||||  | ||| || |||
Sbjct: 2757 ttgtcccatgccctgccgctgagcacgaagcggatgaagaacttgagcaggtccaggggg 2698

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| || || ||||||
Sbjct: 2697 aagtagaagacgatgctg 2680
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>gb|AF480431.1| Zea mays plasma membrane H+ ATPase-like gene, partial sequence
          Length = 6539

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 64/78 (82%)
 Strand = Plus / Plus

                                                                        
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
            |||||||| |||||||| || | ||| || ||||||||||||||||  | ||| || |||
Sbjct: 2876 ttgtcccatgccctgccgctgagcacgaagcggatgaagaacttgagcaggtccaggggg 2935

                              
Query: 61   aagtanaacacaatgctg 78
            ||||| || || ||||||
Sbjct: 2936 aagtagaagacgatgctg 2953
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>emb|AJ441084.1|ZMA441084 Zea mays partial mRNA for proton-exporting ATPase (mha3 gene)
          Length = 1259

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttgtcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtggg 60
           |||||||| |||||||| || | ||| || ||||||||||||||||  | ||| || |||
Sbjct: 638 ttgtcccatgccctgccgctgagcacgaagcggatgaagaacttgagcaggtccaggggg 579

                             
Query: 61  aagtanaacacaatgctg 78
           ||||| || || ||||||
Sbjct: 578 aagtagaagacgatgctg 561
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>gb|AY109425.1| Zea mays CL1965_1 mRNA sequence
          Length = 3431

 Score = 46.1 bits (23), Expect = 0.014
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                          
Query: 1    ttgtcccaggccctgccactcancacaaatcggatgaagaacttga 46
            |||||||| |||||||| || | ||| || ||||||||||||||||
Sbjct: 2760 ttgtcccatgccctgccgctgagcacgaagcggatgaagaacttga 2715
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>emb|AJ440001.1|OSA440001 Oryza sativa (japonica cultivar-group) a3 gene for plasma membrane H+
            ATPase, exons 1-21
          Length = 6072

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 33   gatgaagaacttgaaaatgtcaagtgggaagta 65
            ||||| |||||||| |||||| |||||||||||
Sbjct: 5424 gatgaggaacttgataatgtcgagtgggaagta 5392
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 33       gatgaagaacttgaaaatgtcaagtgggaagta 65
                ||||| |||||||| |||||| |||||||||||
Sbjct: 27428834 gatgaggaacttgataatgtcgagtgggaagta 27428802
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>emb|AL928743.1|CNS08CBG Oryza sativa chromosome 12, . BAC OSJNBb0011N16 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 55237

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                              
Query: 33    gatgaagaacttgaaaatgtcaagtgggaagta 65
             ||||| |||||||| |||||| |||||||||||
Sbjct: 52984 gatgaggaacttgataatgtcgagtgggaagta 53016
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>dbj|AK071252.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023088D22, full
           insert sequence
          Length = 1702

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 33  gatgaagaacttgaaaatgtcaagtgggaagta 65
           ||||| |||||||| |||||| |||||||||||
Sbjct: 962 gatgaggaacttgataatgtcgagtgggaagta 930
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>dbj|AK067535.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109J17, full
            insert sequence
          Length = 3286

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 33   gatgaagaacttgaaaatgtcaagtgggaagta 65
            ||||| |||||||| |||||| |||||||||||
Sbjct: 2604 gatgaggaacttgataatgtcgagtgggaagta 2572
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                                 
Query: 33       gatgaagaacttgaaaatgtcaagtgggaagta 65
                ||||| |||||||| |||||| |||||||||||
Sbjct: 27354434 gatgaggaacttgataatgtcgagtgggaagta 27354402
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>emb|AL732378.3|CNS08C91 Oryza sativa chromosome 12, . BAC OSJNBa0063N15 of library OSJNBa
            from chromosome 12 of cultivar Nipponbare of ssp.
            japonica of Oryza sativa (rice), complete sequence
          Length = 109222

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                             
Query: 33   gatgaagaacttgaaaatgtcaagtgggaagta 65
            ||||| |||||||| |||||| |||||||||||
Sbjct: 4748 gatgaggaacttgataatgtcgagtgggaagta 4716
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>emb|AL731762.2|CNS07YPW Oryza sativa chromosome 12, . BAC OJ1119_E02 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 124605

 Score = 42.1 bits (21), Expect = 0.22
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 33    gatgaagaacttgaaaatgtcaagtgggaagta 65
             ||||| |||||||| |||||| |||||||||||
Sbjct: 97154 gatgaggaacttgataatgtcgagtgggaagta 97122
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>gb|AC099760.5| Mus musculus BAC clone RP23-122E16 from chromosome 8, complete sequence
          Length = 193884

 Score = 40.1 bits (20), Expect = 0.86
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 32     ggatgaagaacttgaaaatg 51
              ||||||||||||||||||||
Sbjct: 151021 ggatgaagaacttgaaaatg 151040
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>ref|XM_521106.1| PREDICTED: Pan troglodytes similar to GWSC6486 (LOC465685), mRNA
          Length = 961

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 938 aagtaaaacacaatgctgaaga 959
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>gb|AC120536.5| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0035N09, complete sequence
          Length = 129468

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 34    atgaagaacttgaaaatgtcaag 56
             ||||||||||||||||| |||||
Sbjct: 73113 atgaagaacttgaaaatttcaag 73135
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>gb|BC012996.2| Homo sapiens PDZ domain containing 11, mRNA (cDNA clone MGC:3404
           IMAGE:3530647), complete cds
          Length = 967

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 928 aagtaaaacacaatgctgaaga 949
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>ref|XM_419805.1| PREDICTED: Gallus gallus similar to CDNA sequence AK122525
            (LOC421778), mRNA
          Length = 2814

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 34   atgaagaacttgaaaatgt 52
            |||||||||||||||||||
Sbjct: 1760 atgaagaacttgaaaatgt 1778
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>gb|CP000082.1| Psychrobacter arcticus 273-4, complete genome
          Length = 2650701

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 33      gatgaagaacttgaaaatg 51
               |||||||||||||||||||
Sbjct: 1581235 gatgaagaacttgaaaatg 1581253
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>ref|NM_138467.1| Homo sapiens chromosome 1 open reading frame 171 (C1orf171), mRNA
          Length = 2380

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  gatgaagaacttgaaaatg 51
           |||||||||||||||||||
Sbjct: 798 gatgaagaacttgaaaatg 816
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>gb|AC091611.5| Homo sapiens chromosome 1 clone RP11-369L17, complete sequence
          Length = 198486

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    gatgaagaacttgaaaatg 51
             |||||||||||||||||||
Sbjct: 45576 gatgaagaacttgaaaatg 45594
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>emb|BX647591.1|HSM807737 Homo sapiens mRNA; cDNA DKFZp313J0833 (from clone DKFZp313J0833)
          Length = 2903

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  gatgaagaacttgaaaatg 51
           |||||||||||||||||||
Sbjct: 245 gatgaagaacttgaaaatg 263
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>emb|BX897746.7| Zebrafish DNA sequence from clone DKEY-112E1 in linkage group 14,
             complete sequence
          Length = 98532

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 33    gatgaagaacttgaaaatg 51
             |||||||||||||||||||
Sbjct: 59558 gatgaagaacttgaaaatg 59576
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>gb|BC071765.1| Homo sapiens chromosome 1 open reading frame 171, mRNA (cDNA clone
           MGC:88405 IMAGE:3931600), complete cds
          Length = 2011

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  gatgaagaacttgaaaatg 51
           |||||||||||||||||||
Sbjct: 798 gatgaagaacttgaaaatg 816
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>gb|BC032341.2| Homo sapiens chromosome 1 open reading frame 171, mRNA (cDNA clone
           IMAGE:5194639)
          Length = 680

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  gatgaagaacttgaaaatg 51
           |||||||||||||||||||
Sbjct: 150 gatgaagaacttgaaaatg 168
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>emb|BX537725.1|HSM805804 Homo sapiens mRNA; cDNA DKFZp686O17275 (from clone DKFZp686O17275);
            complete cds
          Length = 1731

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 61   aagtanaacacaatgctgaaga 82
            ||||| ||||||||||||||||
Sbjct: 1063 aagtaaaacacaatgctgaaga 1084
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>gb|AC116630.4| Homo sapiens BAC clone RP11-395J1 from 4, complete sequence
          Length = 145582

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 38   agaacttgaaaatgtcaag 56
            |||||||||||||||||||
Sbjct: 4656 agaacttgaaaatgtcaag 4674
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>dbj|AK098237.1| Homo sapiens cDNA FLJ40918 fis, clone UTERU2005593
          Length = 2380

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  gatgaagaacttgaaaatg 51
           |||||||||||||||||||
Sbjct: 798 gatgaagaacttgaaaatg 816
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>emb|CR617954.1| full-length cDNA clone CS0DD004YI23 of Neuroblastoma Cot
           50-normalized of Homo sapiens (human)
          Length = 989

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 33  gatgaagaacttgaaaatg 51
           |||||||||||||||||||
Sbjct: 648 gatgaagaacttgaaaatg 666
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>emb|CR593661.1| full-length cDNA clone CS0DC004YB15 of Neuroblastoma Cot
           25-normalized of Homo sapiens (human)
          Length = 981

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 958 aagtaaaacacaatgctgaaga 979
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>gb|AF151061.1|AF151061 Homo sapiens HSPC227 mRNA, complete cds
          Length = 1006

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 959 aagtaaaacacaatgctgaaga 980
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>ref|NM_016484.3| Homo sapiens PDZ domain containing 11 (PDZD11), mRNA
          Length = 1731

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                  
Query: 61   aagtanaacacaatgctgaaga 82
            ||||| ||||||||||||||||
Sbjct: 1063 aagtaaaacacaatgctgaaga 1084
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>emb|BX934207.2| Gallus gallus finished cDNA, clone ChEST446m24
          Length = 1129

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 34   atgaagaacttgaaaatgt 52
            |||||||||||||||||||
Sbjct: 985  atgaagaacttgaaaatgt 1003
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 34       atgaagaacttgaaaatgtcaag 56
                ||||||||||||||||| |||||
Sbjct: 13254302 atgaagaacttgaaaatttcaag 13254324
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>emb|BX005043.8| Zebrafish DNA sequence from clone DKEY-3E19 in linkage group 14, complete
              sequence
          Length = 238499

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 33     gatgaagaacttgaaaatg 51
              |||||||||||||||||||
Sbjct: 147337 gatgaagaacttgaaaatg 147319
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>dbj|AK024746.1| Homo sapiens cDNA: FLJ21093 fis, clone CAS03791, highly similar to
           AF151061 Homo sapiens HSPC227 mRNA
          Length = 1002

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 957 aagtaaaacacaatgctgaaga 978
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>emb|AL954684.9| Mouse DNA sequence from clone RP24-352O9 on chromosome 2, complete
             sequence
          Length = 170478

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 2     tgtcccaggccctgccact 20
             |||||||||||||||||||
Sbjct: 35106 tgtcccaggccctgccact 35088
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>gb|BC089433.1| Homo sapiens PDZ domain containing 11, mRNA (cDNA clone
           IMAGE:30559280), partial cds
          Length = 1016

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                 
Query: 61  aagtanaacacaatgctgaaga 82
           ||||| ||||||||||||||||
Sbjct: 886 aagtaaaacacaatgctgaaga 907
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                       
Query: 34       atgaagaacttgaaaatgtcaag 56
                ||||||||||||||||| |||||
Sbjct: 13334481 atgaagaacttgaaaatttcaag 13334503
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>emb|AL357752.19| Human DNA sequence from clone RP13-26D14 on chromosome Xq13.2-21.1
             Contains the 5' end of the KIF4A gene for kinesin family
             member 4A, gene FLJ21093, a novel gene, the ARR3 gene for
             arrestin 3, retinal (x-arrestin), the P2RY4 gene for
             pyrimidinergic receptor P2Y, G-protein coupled, 4, the
             gene for a novel protein similar to diacylglycerol
             O-acyltransferase 2 like 1 (DGAT2L1), a novel pseudogene,
             the 3' end of the gene for a novel protein similar to
             diacylglycerol O-acyltransferase homolog 2 (mouse) (DGAT2)
             and two CpG islands, complete sequence
          Length = 178868

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                   
Query: 61    aagtanaacacaatgctgaaga 82
             ||||| ||||||||||||||||
Sbjct: 92971 aagtaaaacacaatgctgaaga 92992
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>dbj|AP006139.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT02A16, TM0243,
             complete sequence
          Length = 86350

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 35    tgaagaacttgaaaatgtcaagt 57
             |||| ||||||||||||||||||
Sbjct: 20805 tgaataacttgaaaatgtcaagt 20783
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>gb|M80492.1|TOBPMA2A Nicotiana plumbaginifolia plasma-membrane H+ ATPase (pma2), exons
            13-21
          Length = 3872

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 51/62 (82%)
 Strand = Plus / Minus

                                                                        
Query: 4    tcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtgggaag 63
            ||||||||||| ||||| |   || ||| ||| |||||||||| ||| ||||| ||||||
Sbjct: 2858 tcccaggcccttccactgagagcatatctgatcaagaacttgataatatcaagcgggaag 2799

              
Query: 64   ta 65
            ||
Sbjct: 2798 ta 2797
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>gb|M27888.1|TOBATPASA N.plumbaginifolia H+-translocating ATPase mRNA
          Length = 3178

 Score = 38.2 bits (19), Expect = 3.4
 Identities = 51/62 (82%)
 Strand = Plus / Minus

                                                                        
Query: 4    tcccaggccctgccactcancacaaatcggatgaagaacttgaaaatgtcaagtgggaag 63
            ||||||||||| ||||| |   || ||| ||| |||||||||| ||| ||||| ||||||
Sbjct: 2622 tcccaggcccttccactgagagcatatctgatcaagaacttgataatatcaagcgggaag 2563

              
Query: 64   ta 65
            ||
Sbjct: 2562 ta 2561


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 638,838
Number of Sequences: 3902068
Number of extensions: 638838
Number of successful extensions: 52980
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 52859
Number of HSP's gapped (non-prelim): 121
length of query: 82
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 61
effective length of database: 17,151,101,840
effective search space: 1046217212240
effective search space used: 1046217212240
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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