| Clone Name | rbags5f12 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AC090437.62| Mus musculus strain C57BL/6J clone rp23-11f20 map 6, complete sequence Length = 227127 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 185 ctgagaggacctgctctctgc 205 ||||||||||||||||||||| Sbjct: 109175 ctgagaggacctgctctctgc 109155
>emb|AL033522.1|HS451B21 Human DNA sequence from clone RP3-451B21 on chromosome 6q24 Contains the HSPC228 gene for hypothetical protein HSPC228 and a novel gene, complete sequence Length = 135162 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 275 tttcattcatttacaactcat 295 ||||||||||||||||||||| Sbjct: 68073 tttcattcatttacaactcat 68053
>emb|AL021919.4|HS1045J21 Human DNA sequence from clone RP5-1045J21 on chromosome 1q23.3-24.3 Contains part of the TNR gene for tenascin R (restrictin, janusin), a novel gene and one CpG island, complete sequence Length = 138636 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 182 catctgagaggacctgctctctgca 206 |||||||||| |||||||||||||| Sbjct: 1746 catctgagagcacctgctctctgca 1722
>emb|BX255963.11| Zebrafish DNA sequence from clone CH211-195D17 in linkage group 20, complete sequence Length = 103956 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 6 tttgtttcaaacaccacatttggag 30 |||||||||||||| |||||||||| Sbjct: 32971 tttgtttcaaacacaacatttggag 32995
>emb|AL589876.11| Mouse DNA sequence from clone RP23-117O11 on chromosome 2, complete sequence Length = 221782 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 185 ctgagaggacctgctctctgc 205 ||||||||||||||||||||| Sbjct: 172218 ctgagaggacctgctctctgc 172238
>gb|AC122330.4| Mus musculus BAC clone RP23-342G7 from chromosome 18, complete sequence Length = 194291 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 275 tttcattcatttacaactca 294 |||||||||||||||||||| Sbjct: 134647 tttcattcatttacaactca 134628
>emb|BX649643.10| Zebrafish DNA sequence from clone CH211-125M10 in linkage group 22, complete sequence Length = 177325 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 atgatctgttacactttggtgata 114 ||||||| |||||||||||||||| Sbjct: 14955 atgatcttttacactttggtgata 14932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,128,122 Number of Sequences: 3902068 Number of extensions: 3128122 Number of successful extensions: 54331 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 54322 Number of HSP's gapped (non-prelim): 9 length of query: 380 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 358 effective length of database: 17,147,199,772 effective search space: 6138697518376 effective search space used: 6138697518376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)