ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5f10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CADH1_HUMAN (P12830) Epithelial-cadherin precursor (E-cadherin) ... 30 2.0
2TALA_DICDI (P54633) Filopodin (Talin homolog) 30 2.0

>CADH1_HUMAN (P12830) Epithelial-cadherin precursor (E-cadherin) (Uvomorulin)|
           (Cadherin-1) (CAM 120/80) (CD324 antigen) [Contains:
           E-Cad/CTF1; E-Cad/CTF2; E-Cad/CTF3]
          Length = 882

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -2

Query: 100 ISSWVPHIPEPASDGADVHTYSFNLCKKKMHTG 2
           +SSW+   PEP   G D  +Y+F + ++ +  G
Sbjct: 17  VSSWLCQEPEPCHPGFDAESYTFTVPRRHLERG 49



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>TALA_DICDI (P54633) Filopodin (Talin homolog)|
          Length = 2492

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 260 SXSSSATAKGYSSCGRSAPGTSTNLVTPLAPLXASISALDLL-GEFXVXTTKTGTSPSN 433
           S ++S++  GY + G  A     +   P+  L +++ A DLL GE     + TG +P N
Sbjct: 391 SVANSSSYMGYGAGGGGANQLQPSQQIPITDLKSALRATDLLIGELGGFRSSTGATPQN 449


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,640,667
Number of Sequences: 219361
Number of extensions: 1159084
Number of successful extensions: 3216
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3212
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2628831825
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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