ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5f10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY105830.1| Zea mays PCO092732 mRNA sequence 125 1e-25
2dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
3dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic D... 103 5e-19
4dbj|AK065233.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 3e-11
5gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome... 42 1.5
6gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome... 42 1.5
7gb|AC122878.4| Mus musculus BAC clone RP23-116F15 from chromosom... 40 5.9
8ref|XM_805181.1| Trypanosoma cruzi strain CL Brener thimet oligo... 40 5.9
9gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete... 40 5.9
10emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; se... 40 5.9
11gb|AC022145.8| Homo sapiens chromosome 19 clone CTD-2579N5, comp... 40 5.9
12gb|AC010617.8| Homo sapiens chromosome 19 clone CTD-2607J13, com... 40 5.9
13gb|AC105998.4| Homo sapiens chromosome 8, clone CTC-877B12, comp... 40 5.9
14gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8... 40 5.9
15gb|AC142455.4| Mus musculus BAC clone RP23-179B15 from chromosom... 40 5.9
16dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete... 40 5.9
17gb|AE015451.1| Pseudomonas putida KT2440 complete genome 40 5.9
18gb|AF035676.1|AF035676 Gallus gallus cellular nucleic acid bindi... 40 5.9 
>gb|AY105830.1| Zea mays PCO092732 mRNA sequence
          Length = 1353

 Score =  125 bits (63), Expect = 1e-25
 Identities = 163/198 (82%)
 Strand = Plus / Minus

                                                                        
Query: 241  gaatgatccctgcaggaagtcgtanagctcctctgcaactgccaaggggtattcttcctg 300
            ||||||| |||||||||||  ||| || ||||| || |||||||||||||||||||||||
Sbjct: 1173 gaatgattcctgcaggaagctgtagagttcctccgcgactgccaaggggtattcttcctg 1114

                                                                        
Query: 301  cggcagaagcgcgcccggnacctccacgaatttggtcacgcctttggcgcccttganagc 360
            ||| ||||| ||||| |  |||||||| || || ||||| ||||| | |||| | | |||
Sbjct: 1113 cggtagaagagcgcctgcgacctccacaaacttcgtcacccctttagagccccttagagc 1054

                                                                        
Query: 361  ctccatctcggccttggacctcttgggggaattcancgtcnacacaactaaaacagggac 420
            |||||||||||||||||| |||||||| | ||| | |||  |||| || | ||| || ||
Sbjct: 1053 ctccatctcggccttggatctcttgggagcattgaccgttgacactaccagaactggtac 994

                              
Query: 421  atctccgtccaacttggc 438
             |||||||| ||||||||
Sbjct: 993  gtctccgtctaacttggc 976
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score =  103 bits (52), Expect = 5e-19
 Identities = 133/161 (82%)
 Strand = Plus / Minus

                                                                            
Query: 235      tgacgagaatgatccctgcaggaagtcgtanagctcctctgcaactgccaaggggtattc 294
                ||||||||||||| ||| ||| |||  ||| || ||||| || ||||   | ||| ||||
Sbjct: 14661724 tgacgagaatgattccttcagaaagctgtagagttcctccgcgactggtgatgggaattc 14661665

                                                                            
Query: 295      ttcctgcggcagaagcgcgcccggnacctccacgaatttggtcacgcctttggcgccctt 354
                 |||||||||||||| || || || |||||||||||||| |||||||||||||||||  |
Sbjct: 14661664 ctcctgcggcagaagggcacctggaacctccacgaattttgtcacgcctttggcgcctct 14661605

                                                         
Query: 355      ganagcctccatctcggccttggacctcttgggggaattca 395
                || ||| |||||||| ||||| |||||||| |||| |||||
Sbjct: 14661604 gagagcttccatctcagccttcgacctcttcggggcattca 14661564
to top
>dbj|AP005397.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0643D11
          Length = 137525

 Score =  103 bits (52), Expect = 5e-19
 Identities = 133/161 (82%)
 Strand = Plus / Minus

                                                                         
Query: 235   tgacgagaatgatccctgcaggaagtcgtanagctcctctgcaactgccaaggggtattc 294
             ||||||||||||| ||| ||| |||  ||| || ||||| || ||||   | ||| ||||
Sbjct: 83391 tgacgagaatgattccttcagaaagctgtagagttcctccgcgactggtgatgggaattc 83332

                                                                         
Query: 295   ttcctgcggcagaagcgcgcccggnacctccacgaatttggtcacgcctttggcgccctt 354
              |||||||||||||| || || || |||||||||||||| |||||||||||||||||  |
Sbjct: 83331 ctcctgcggcagaagggcacctggaacctccacgaattttgtcacgcctttggcgcctct 83272

                                                      
Query: 355   ganagcctccatctcggccttggacctcttgggggaattca 395
             || ||| |||||||| ||||| |||||||| |||| |||||
Sbjct: 83271 gagagcttccatctcagccttcgacctcttcggggcattca 83231
to top
>dbj|AK065233.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002H15, full
            insert sequence
          Length = 1239

 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                        
Query: 235  tgacgagaatgatccctgcaggaagtcgtanagctcctctgcaactgccaaggggtattc 294
            ||||||||||||| ||| ||| |||  ||| || ||||| || ||||   | ||| ||||
Sbjct: 1064 tgacgagaatgattccttcagaaagctgtagagttcctccgcgactggtgatgggaattc 1005

                                                                     
Query: 295  ttcctgcggcagaagcgcgcccggnacctccacgaatttggtcacgcctttggcgcc 351
             |||||||||||||| || || || |||||||||||||| |||||||||||||||||
Sbjct: 1004 ctcctgcggcagaagggcacctggaacctccacgaattttgtcacgcctttggcgcc 948
to top
>gb|AC126257.4| Mus musculus BAC clone RP24-247A8 from chromosome 9, complete sequence
          Length = 174764

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 163   aaaaggcgatatgagttgaac 183
             |||||||||||||||||||||
Sbjct: 79315 aaaaggcgatatgagttgaac 79335
to top
>gb|AC158395.2| Mus musculus BAC clone RP23-282I1 from chromosome 14, complete sequence
          Length = 220498

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 193   atcaccccagtgtagtttcct 213
             |||||||||||||||||||||
Sbjct: 92683 atcaccccagtgtagtttcct 92663
to top
>gb|AC122878.4| Mus musculus BAC clone RP23-116F15 from chromosome 14, complete
             sequence
          Length = 226611

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 372   ccttggacctcttgggggaa 391
             ||||||||||||||||||||
Sbjct: 91562 ccttggacctcttgggggaa 91581
to top
>ref|XM_805181.1| Trypanosoma cruzi strain CL Brener thimet oligopeptidase
            (Tc00.1047053511237.10) partial mRNA
          Length = 2061

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 323  tccacgaatttggtcacgcc 342
            ||||||||||||||||||||
Sbjct: 1418 tccacgaatttggtcacgcc 1437
to top
>gb|AC122912.2| Mus musculus BAC clone RP23-61E5 from 7, complete sequence
          Length = 255062

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 114    tctttctaaaagctcaggtgcaacatgg 141
              ||||||| ||||||||||||||| ||||
Sbjct: 129241 tctttctcaaagctcaggtgcaagatgg 129268
to top
>emb|BX572091.1| Prochlorococcus marinus MED4 complete genome; segment 2/5
          Length = 349082

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 106    tgctttgctctttctaaaagctca 129
              ||||||||| ||||||||||||||
Sbjct: 208568 tgctttgctttttctaaaagctca 208545
to top
>gb|AC022145.8| Homo sapiens chromosome 19 clone CTD-2579N5, complete sequence
          Length = 174994

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 115    ctttctaaaagctcaggtgc 134
              ||||||||||||||||||||
Sbjct: 114282 ctttctaaaagctcaggtgc 114301
to top
>gb|AC010617.8| Homo sapiens chromosome 19 clone CTD-2607J13, complete sequence
          Length = 101166

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 115   ctttctaaaagctcaggtgc 134
             ||||||||||||||||||||
Sbjct: 35219 ctttctaaaagctcaggtgc 35200
to top
>gb|AC105998.4| Homo sapiens chromosome 8, clone CTC-877B12, complete sequence
          Length = 76970

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 79    tgtgtggcacccaggaactgatgg 102
             |||||||| |||||||||||||||
Sbjct: 29094 tgtgtggcccccaggaactgatgg 29117
to top
>gb|AC019176.4|AC019176 Homo sapiens BAC clone RP11-221H10 from 8, complete sequence
          Length = 170680

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 79   tgtgtggcacccaggaactgatgg 102
            |||||||| |||||||||||||||
Sbjct: 1453 tgtgtggcccccaggaactgatgg 1476
to top
>gb|AC142455.4| Mus musculus BAC clone RP23-179B15 from chromosome 14, complete
             sequence
          Length = 207514

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 372   ccttggacctcttgggggaa 391
             ||||||||||||||||||||
Sbjct: 13828 ccttggacctcttgggggaa 13809
to top
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome
          Length = 2593857

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 181    aactcggtcaggatcaccccagtg 204
              |||| |||||||||||||||||||
Sbjct: 951478 aacttggtcaggatcaccccagtg 951455
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 177     gttgaactcggtcaggatcacccc 200
               ||||||||||||||| ||||||||
Sbjct: 3777225 gttgaactcggtcagcatcacccc 3777202
to top
>gb|AF035676.1|AF035676 Gallus gallus cellular nucleic acid binding protein mRNA, complete
           cds
          Length = 1516

 Score = 40.1 bits (20), Expect = 5.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 298 ctgcggcagaagcgcgcccg 317
           ||||||||||||||||||||
Sbjct: 91  ctgcggcagaagcgcgcccg 72


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,604,886
Number of Sequences: 3902068
Number of extensions: 2604886
Number of successful extensions: 40731
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 40660
Number of HSP's gapped (non-prelim): 71
length of query: 440
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 418
effective length of database: 17,147,199,772
effective search space: 7167529504696
effective search space used: 7167529504696
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top