ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5f08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 1.6
2gb|AC010109.6| Drosophila melanogaster 3L BAC RP98-9B4 (Roswell ... 38 6.4
3gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12... 38 6.4
4gb|AC004658.1|AC004658 Drosophila melanogaster DNA sequence (P1s... 38 6.4

>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 1.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 106     cgacagattgacggcgacgc 125
               ||||||||||||||||||||
Sbjct: 8957460 cgacagattgacggcgacgc 8957479



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>gb|AC010109.6| Drosophila melanogaster 3L BAC RP98-9B4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 167675

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 32    ctacaaagcgggaaaattc 50
             |||||||||||||||||||
Sbjct: 42565 ctacaaagcgggaaaattc 42583



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>gb|AE003478.3| Drosophila melanogaster chromosome 3L, section 12 of 83 of the complete
              sequence
          Length = 317354

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 32     ctacaaagcgggaaaattc 50
              |||||||||||||||||||
Sbjct: 215606 ctacaaagcgggaaaattc 215588



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>gb|AC004658.1|AC004658 Drosophila melanogaster DNA sequence (P1s DS00079 (D250) and DS08435
            (D258)), complete sequence
          Length = 94718

 Score = 38.2 bits (19), Expect = 6.4
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 32   ctacaaagcgggaaaattc 50
            |||||||||||||||||||
Sbjct: 4162 ctacaaagcgggaaaattc 4180


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 594,129
Number of Sequences: 3902068
Number of extensions: 594129
Number of successful extensions: 36174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36131
Number of HSP's gapped (non-prelim): 43
length of query: 135
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 114
effective length of database: 17,151,101,840
effective search space: 1955225609760
effective search space used: 1955225609760
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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