>RF1_ORYSA (Q76C99) Rf1 protein, mitochondrial precursor (PPR protein)|
           (Fertility restorer) (Restorer for CMS)
          Length = 791

 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 36/121 (29%), Positives = 69/121 (57%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           NSL+H        E+ E ++ E+   G   +   +N++I ++ ++G++ E+ +LF  M  
Sbjct: 445 NSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFELMVR 504

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIAD 354
            G+ P+++TYN  +  Y      +EA+ L+  MV+ G KPN  TY++++  YC+  ++ D
Sbjct: 505 IGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMED 564

Query: 353 A 351
           A
Sbjct: 565 A 565



 Score = 75.1 bits (183), Expect = 2e-13
 Identities = 35/111 (31%), Positives = 62/111 (55%)
 Frame = -3

Query: 662 NILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSY 483
           +++ + +  G+ PD  SY T+I  + ++G   +A   + EM   G++PD+VTYN  + + 
Sbjct: 182 HMMADDRGGGSPPDVVSYTTVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAAL 241

Query: 482 VANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNL 330
                 ++A++++  MV  G  P+  TYNSIL  YC  G+  +A  FL  +
Sbjct: 242 CKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKM 292



 Score = 74.7 bits (182), Expect = 3e-13
 Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           NS++    +    +K   +L  +  +G  PD  +YN++++ Y   GQ KEA     +M+S
Sbjct: 235 NSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRS 294

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIAD 354
            G+ PD+VTY++ +     N    EA  +   M  RG KP   TY ++LQ Y   G + +
Sbjct: 295 DGVEPDVVTYSLLMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVE 354

Query: 353 AKSFLSNLPQ--LHP 315
               L  + +  +HP
Sbjct: 355 MHGLLDLMVRNGIHP 369



 Score = 73.2 bits (178), Expect = 8e-13
 Identities = 41/128 (32%), Positives = 68/128 (53%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           N+L++ Y   G  ++   +L+ + S G +P+  +Y+T+I  Y +  +M++A  LF EM+S
Sbjct: 515 NTLINGYCLAGKMDEAMKLLSGMVSVGLKPNTVTYSTLINGYCKISRMEDALVLFKEMES 574

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIAD 354
           SG+ PDI+TYNI ++          A +L   +   G +    TYN IL   C++    D
Sbjct: 575 SGVSPDIITYNIILQGLFQTRRTAAAKELYVRITESGTQIELSTYNIILHGLCKNKLTDD 634

Query: 353 AKSFLSNL 330
           A     NL
Sbjct: 635 ALQMFQNL 642



 Score = 71.2 bits (173), Expect = 3e-12
 Identities = 36/134 (26%), Positives = 63/134 (47%)
 Frame = -3

Query: 725 CKHTNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFS 546
           C   NS++H Y   G  ++    L +++S G  PD  +Y+ ++    + G+  EA ++F 
Sbjct: 266 CMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEARKIFD 325

Query: 545 EMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHG 366
            M   GL P+I TY   ++ Y       E   L+  MV  G  P+   ++ ++  Y + G
Sbjct: 326 SMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQG 385

Query: 365 KIADAKSFLSNLPQ 324
           K+  A    S + Q
Sbjct: 386 KVDQAMLVFSKMRQ 399



 Score = 70.9 bits (172), Expect = 4e-12
 Identities = 42/122 (34%), Positives = 65/122 (53%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           NS++  + + G   + E +   +   G +P+  +YNT+I  Y   G+M EA +L S M S
Sbjct: 480 NSIIDSHCKEGRVIESEKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGMVS 539

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIAD 354
            GL P+ VTY+  +  Y   S  E+A+ L + M + G  P+  TYN ILQ   +  + A 
Sbjct: 540 VGLKPNTVTYSTLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAA 599

Query: 353 AK 348
           AK
Sbjct: 600 AK 601



 Score = 67.8 bits (164), Expect = 3e-11
 Identities = 32/127 (25%), Positives = 71/127 (55%)
 Frame = -3

Query: 710 SLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSS 531
           ++++ + + GD +K  +   E+   G  PD  +YN++I A  +   M +A  + + M  +
Sbjct: 201 TVINGFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTMVKN 260

Query: 530 GLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADA 351
           G++PD +TYN  +  Y ++   +EAI  ++ M + G +P+  TY+ ++   C++G+  +A
Sbjct: 261 GVMPDCMTYNSILHGYCSSGQPKEAIGFLKKMRSDGVEPDVVTYSLLMDYLCKNGRCMEA 320

Query: 350 KSFLSNL 330
           +    ++
Sbjct: 321 RKIFDSM 327



 Score = 65.5 bits (158), Expect = 2e-10
 Identities = 37/134 (27%), Positives = 65/134 (48%)
 Frame = -3

Query: 710 SLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSS 531
           +L+  Y+  G   +   +L  +  +G  PD Y ++ +I AY ++G++ +A  +FS+M+  
Sbjct: 341 TLLQGYATKGALVEMHGLLDLMVRNGIHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQ 400

Query: 530 GLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADA 351
           GL P+ VTY   +     +   E+A+     M+  G  P    YNS++   C   K   A
Sbjct: 401 GLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEGLSPGNIVYNSLIHGLCTCNKWERA 460

Query: 350 KSFLSNLPQLHPGI 309
           +  +  L  L  GI
Sbjct: 461 EELI--LEMLDRGI 472



 Score = 64.3 bits (155), Expect = 4e-10
 Identities = 31/126 (24%), Positives = 59/126 (46%)
 Frame = -3

Query: 707 LMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSG 528
           LM    + G C +   I   +   G +P+  +Y T++  Y  KG + E   L   M  +G
Sbjct: 307 LMDYLCKNGRCMEARKIFDSMTKRGLKPEITTYGTLLQGYATKGALVEMHGLLDLMVRNG 366

Query: 527 LIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAK 348
           + PD   ++I + +Y      ++A+ +   M  +G  PN  TY +++   C+ G++ DA 
Sbjct: 367 IHPDHYVFSILICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAM 426

Query: 347 SFLSNL 330
            +   +
Sbjct: 427 LYFEQM 432



 Score = 61.2 bits (147), Expect = 3e-09
 Identities = 28/120 (23%), Positives = 63/120 (52%)
 Frame = -3

Query: 707 LMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSG 528
           L+  Y++ G  ++   + ++++  G  P+  +Y  +I    + G++++A   F +M   G
Sbjct: 377 LICAYAKQGKVDQAMLVFSKMRQQGLNPNAVTYGAVIGILCKSGRVEDAMLYFEQMIDEG 436

Query: 527 LIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAK 348
           L P  + YN  +      + +E A +L+  M+ RG   N   +NSI+  +C+ G++ +++
Sbjct: 437 LSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIESE 496



 Score = 56.2 bits (134), Expect = 1e-07
 Identities = 30/99 (30%), Positives = 51/99 (51%)
 Frame = -3

Query: 614 SYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYM 435
           ++N MI A  + G+  EA  LF    S+GL+P+  TY +  ++ +   + EE   L   M
Sbjct: 653 TFNIMIDALLKVGRNDEAKDLFVAFSSNGLVPNYWTYRLMAENIIGQGLLEELDQLFLSM 712

Query: 434 VTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQLH 318
              GC  +    N I++E  + G+I  A ++LS + + H
Sbjct: 713 EDNGCTVDSGMLNFIVRELLQRGEITRAGTYLSMIDEKH 751



 Score = 55.8 bits (133), Expect = 1e-07
 Identities = 30/102 (29%), Positives = 48/102 (47%)
 Frame = -3

Query: 635 GARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEA 456
           G  P    YN++I+      + + A  L  EM   G+  + + +N  + S+       E+
Sbjct: 436 GLSPGNIVYNSLIHGLCTCNKWERAEELILEMLDRGICLNTIFFNSIIDSHCKEGRVIES 495

Query: 455 IDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNL 330
             L   MV  G KPN  TYN+++  YC  GK+ +A   LS +
Sbjct: 496 EKLFELMVRIGVKPNVITYNTLINGYCLAGKMDEAMKLLSGM 537



 Score = 52.4 bits (124), Expect = 1e-06
 Identities = 28/122 (22%), Positives = 60/122 (49%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           ++L++ Y ++   E    +  E++SSG  PD  +YN ++    +  +   A  L+  +  
Sbjct: 550 STLINGYCKISRMEDALVLFKEMESSGVSPDIITYNIILQGLFQTRRTAAAKELYVRITE 609

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIAD 354
           SG   ++ TYNI +     N + ++A+ + + +     K   RT+N ++    + G+  +
Sbjct: 610 SGTQIELSTYNIILHGLCKNKLTDDALQMFQNLCLMDLKLEARTFNIMIDALLKVGRNDE 669

Query: 353 AK 348
           AK
Sbjct: 670 AK 671



 Score = 47.8 bits (112), Expect = 4e-05
 Identities = 28/113 (24%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
 Frame = -3

Query: 659 ILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEM---KSSGLIPDIVTYNIFVK 489
           +L  +   G  P+ +SYN ++     + + +EA  L   M   +  G  PD+V+Y   + 
Sbjct: 145 VLRRMTELGCIPNVFSYNILLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYTTVIN 204

Query: 488 SYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNL 330
            +      ++A      M+ RG  P+  TYNSI+   C+   +  A   L+ +
Sbjct: 205 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYNSIIAALCKAQAMDKAMEVLNTM 257

>Y4791_ARATH (P0C043) Hypothetical PPR-repeat protein At4g17915|
          Length = 463

 Score = 61.6 bits (148), Expect = 2e-09
 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 1/122 (0%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           N+L+  Y R    E+   +   ++ +G RPD  +YN++I    R+  +     LF EM  
Sbjct: 52  NTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSLIAGAARRLMLDHVLYLFDEMLE 111

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAID-LVRYMVTRGCKPNERTYNSILQEYCRHGKIA 357
            G+ PD+ +YN  +  Y      EEA   L + +   G  P   TYN +L   C+ G I 
Sbjct: 112 WGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAGLNPGPDTYNVLLDALCKCGYID 171

Query: 356 DA 351
           +A
Sbjct: 172 NA 173



 Score = 58.2 bits (139), Expect = 3e-08
 Identities = 37/124 (29%), Positives = 62/124 (50%), Gaps = 3/124 (2%)
 Frame = -3

Query: 674 EKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIF 495
           EK E+++ +    G  PD  +YNT+I  Y R   ++EA  +   M+ +G+ PD+ TYN  
Sbjct: 30  EKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYNSL 89

Query: 494 VKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFL---SNLPQ 324
           +       M +  + L   M+  G  P+  +YN+++  Y + GK  +A   L     L  
Sbjct: 90  IAGAARRLMLDHVLYLFDEMLEWGIYPDLWSYNTLMCCYFKLGKHEEAFRVLYKDLQLAG 149

Query: 323 LHPG 312
           L+PG
Sbjct: 150 LNPG 153



 Score = 55.1 bits (131), Expect = 2e-07
 Identities = 29/110 (26%), Positives = 56/110 (50%)
 Frame = -3

Query: 659 ILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYV 480
           +LTE+K SG  P+  +Y T++  Y +  +++   +LF EMK  G   D   Y   V + +
Sbjct: 210 MLTELKKSGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALI 269

Query: 479 ANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNL 330
                +EA + ++ +V +G + +  +YN++L  Y + G +      L  +
Sbjct: 270 KTGRTKEAYEYMQELVRKGRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEI 319



 Score = 53.1 bits (126), Expect = 8e-07
 Identities = 32/135 (23%), Positives = 63/135 (46%)
 Frame = -3

Query: 710 SLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSS 531
           +++ +Y +     +   +  E+K  G   D Y+Y  ++ A  + G+ KEA     E+   
Sbjct: 228 TILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKEAYEYMQELVRK 287

Query: 530 GLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADA 351
           G   DIV+YN  +  Y  +   +   DL+  +  RG K +E T+  I+    R G+   A
Sbjct: 288 GRRHDIVSYNTLLNLYFKDGNLDAVDDLLGEIERRGMKADEYTHTIIVNGLLRTGQTRRA 347

Query: 350 KSFLSNLPQLHPGIS 306
           +    ++ ++  G++
Sbjct: 348 EEHFVSMGEMGIGLN 362



 Score = 44.3 bits (103), Expect = 4e-04
 Identities = 27/128 (21%), Positives = 55/128 (42%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           N L+    + G  +    +  E++S   +P+  +YN +I    +  ++  A  + +E+K 
Sbjct: 158 NVLLDALCKCGYIDNALELFKEMQSR-FKPELMTYNILINGLCKSRRVGTAKWMLTELKK 216

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIAD 354
           SG  P+ VTY   +K Y         + L   M   G   +   Y +++    + G+  +
Sbjct: 217 SGYTPNAVTYTTILKLYFKTRRIRRGLQLFLEMKREGYTYDGYAYFAVVSALIKTGRTKE 276

Query: 353 AKSFLSNL 330
           A  ++  L
Sbjct: 277 AYEYMQEL 284



 Score = 42.0 bits (97), Expect = 0.002
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = -3

Query: 575 QMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYN 396
           ++++A  L  +    G+ PD+VTYN  +  Y      EEA  + R M   G +P+  TYN
Sbjct: 28  KLEKAESLIIDGIRLGVDPDVVTYNTLISGYCRFVGIEEAYAVTRRMRDAGIRPDVATYN 87

Query: 395 SIL 387
           S++
Sbjct: 88  SLI 90

>YLE1_SCHPO (Q10451) Hypothetical protein C1093.01 in chromosome I|
          Length = 1261

 Score = 50.1 bits (118), Expect = 7e-06
 Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 10/118 (8%)
 Frame = -3

Query: 707  LMHMYSRLGDCEKCE---NILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMK 537
            L++  +R GD +      NI  E K    +P  + YN ++   GR  +  E  +LF EMK
Sbjct: 894  LINNSTRRGDTDDATTALNIFEETKRHNVKPSVFLYNAVLSKLGRARRTTECWKLFQEMK 953

Query: 536  SSGLIPDIVTYNIFVKS-------YVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQ 384
             SGL+P  VTY   + +        +A  +F E  +   Y      +P    YN+++Q
Sbjct: 954  ESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMENQPNY------QPRVAPYNTMIQ 1005



 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 30/115 (26%), Positives = 54/115 (46%), Gaps = 3/115 (2%)
 Frame = -3

Query: 713  NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
            N+++    R     +C  +  E+K SG  P   +Y T+I A  R G    A +LF+EM++
Sbjct: 930  NAVLSKLGRARRTTECWKLFQEMKESGLLPTSVTYGTVINAACRIGDESLAEKLFAEMEN 989

Query: 533  S-GLIPDIVTYNIFVKSYVANSMF--EEAIDLVRYMVTRGCKPNERTYNSILQEY 378
                 P +  YN  ++ +   +MF  E+A+     +     +P+  TY  ++  Y
Sbjct: 990  QPNYQPRVAPYNTMIQ-FEVQTMFNREKALFYYNRLCATDIEPSSHTYKLLMDAY 1043

>PTCD1_MOUSE (Q8C2E4) Pentatricopeptide repeat protein 1|
          Length = 695

 Score = 47.4 bits (111), Expect = 5e-05
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 4/92 (4%)
 Frame = -3

Query: 647 IKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY----NIFVKSYV 480
           +K    +P   +Y  +I   GR G +K+A RLF++MK   L P   TY    N+  +S  
Sbjct: 162 LKEERLQPLECNYTVLIGGCGRVGYLKKAFRLFNDMKKRDLEPSDATYTALFNVCAESPW 221

Query: 479 ANSMFEEAIDLVRYMVTRGCKPNERTYNSILQ 384
            +S  + A+ L + +  R  + N +TY+++L+
Sbjct: 222 KDSALQSALKLRQQLQARNFQLNLKTYHALLK 253



 Score = 33.5 bits (75), Expect = 0.69
 Identities = 22/102 (21%), Positives = 47/102 (46%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKS 534
           N+L+   S+LGD E  + +L  +   G  P+  ++  +     R    ++  +L ++MK 
Sbjct: 522 NTLIRKKSKLGDLEGAKALLPILAKKGIVPNLRTFCNLAIGCHRP---RDGMQLLADMKK 578

Query: 533 SGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNE 408
           S + P+I  Y+  + + +    +   I +++ M       NE
Sbjct: 579 SQVSPNIHIYSTLINAALKKLDYTYLISILKDMRQNSVPVNE 620

>YG3M_YEAST (P48237) Hypothetical 101.4 kDa protein in RPL24B-RSR1 intergenic|
           region
          Length = 864

 Score = 46.6 bits (109), Expect = 8e-05
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
 Frame = -3

Query: 635 GARPDRYSYNTMIYAYGRKGQMKEASRLFSEMK--SSGLIPDIVTYNIFVKSYVANSMFE 462
           G  P++ +  T+I  Y RK   K+A   F  MK  S+   PDI TYN  ++       F 
Sbjct: 315 GITPNKQNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFP 374

Query: 461 EAIDLVRYMVTRGCKPNERTY 399
           +A+DL + +     KP   TY
Sbjct: 375 KALDLFQEIQDHNIKPTTNTY 395



 Score = 29.6 bits (65), Expect = 10.0
 Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 2/86 (2%)
 Frame = -3

Query: 722 KHTNSLMHMYSRLGDCEKCENILTEIKSSGAR--PDRYSYNTMIYAYGRKGQMKEASRLF 549
           ++  +++  YSR    ++  N    +K    +  PD  +YNTM+    ++    +A  LF
Sbjct: 321 QNLTTVIQFYSRKEMTKQAWNTFDTMKFLSTKHFPDICTYNTMLRICEKERNFPKALDLF 380

Query: 548 SEMKSSGLIPDIVTYNIFVKSYVANS 471
            E++   + P   TY +  +   ++S
Sbjct: 381 QEIQDHNIKPTTNTYIMMARVLASSS 406

>AEP3_KLULA (Q6CIF3) ATPase expression protein 3|
          Length = 593

 Score = 46.2 bits (108), Expect = 1e-04
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 7/80 (8%)
 Frame = -3

Query: 611 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSM-------FEEAI 453
           +N +IY YG K        L+++MKS G+ P++ TYN+ +++ + NS        + EAI
Sbjct: 216 FNDVIYYYGNKNNFATCRELYAQMKSEGIAPNVQTYNLMLRNLLRNSRLIKQQLPYREAI 275

Query: 452 DLVRYMVTRGCKPNERTYNS 393
             +  M       +  T+N+
Sbjct: 276 FYLERMKKENISADVITWNT 295

>PTCD1_HUMAN (O75127) Pentatricopeptide repeat protein 1|
          Length = 700

 Score = 43.5 bits (101), Expect = 7e-04
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
 Frame = -3

Query: 647 IKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY----NIFVKSYV 480
           +K    +P   +Y  +I   GR G +K+A  L+++MK   L P   TY    N+  +S  
Sbjct: 164 LKEERLQPMESNYTVLIGGCGRVGYLKKAFNLYNQMKKRDLEPSDATYTALFNVCAESPW 223

Query: 479 ANSMFEEAIDLVRYMVTRGCKPNERTYNSILQ 384
            +S  + A+ L + +  +  + N +TY+++L+
Sbjct: 224 KDSALQSALKLRQQLQAKNFELNLKTYHALLK 255



 Score = 30.4 bits (67), Expect = 5.8
 Identities = 20/97 (20%), Positives = 43/97 (44%), Gaps = 1/97 (1%)
 Frame = -3

Query: 611 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY-NIFVKSYVANSMFEEAIDLVRYM 435
           +NT++    + G ++ A  L   +   GL+P++ T+ N+ +  +      +   D+ +  
Sbjct: 523 FNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQ 582

Query: 434 VTRGCKPNERTYNSILQEYCRHGKIADAKSFLSNLPQ 324
           VT    PN   Y++++    R        S L ++ Q
Sbjct: 583 VT----PNTHIYSALINAAIRKLNYTYLISILKDMKQ 615

>PTCD1_PONPY (Q5R655) Pentatricopeptide repeat protein 1|
          Length = 698

 Score = 43.1 bits (100), Expect = 9e-04
 Identities = 25/92 (27%), Positives = 48/92 (52%), Gaps = 4/92 (4%)
 Frame = -3

Query: 647 IKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY----NIFVKSYV 480
           +K    +P   +Y  +I   GR G +K+A  L+++MK   L P   TY    N+  +S  
Sbjct: 162 LKEERLQPMESNYTALIGGCGRVGYLKKAFSLYNQMKKRDLEPSDATYTALFNVCAESPW 221

Query: 479 ANSMFEEAIDLVRYMVTRGCKPNERTYNSILQ 384
            +S  + A+ L + +  +  + N +TY+++L+
Sbjct: 222 KDSALQSALKLRQQLQAKNFELNLKTYHALLK 253



 Score = 30.0 bits (66), Expect = 7.6
 Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 1/81 (1%)
 Frame = -3

Query: 611 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY-NIFVKSYVANSMFEEAIDLVRYM 435
           +NT++    + G ++ A  L   +   GL+P++ T+ N+ +  +      +   D+ +  
Sbjct: 521 FNTLVRKKSKLGDLEGAKALLPVLAKRGLVPNLQTFCNLAIGCHRPKDGLQLLTDMKKSQ 580

Query: 434 VTRGCKPNERTYNSILQEYCR 372
           VT    PN   Y++++    R
Sbjct: 581 VT----PNSHIYSALINAAVR 597

>LPPRC_HUMAN (P42704) 130 kDa leucine-rich protein (LRP 130) (GP130)|
           (Leucine-rich PPR motif-containing protein)
          Length = 1273

 Score = 42.4 bits (98), Expect = 0.001
 Identities = 21/75 (28%), Positives = 33/75 (44%)
 Frame = -3

Query: 563 ASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQ 384
           A R++  ++  G + D+  YN  +K Y+ N       D +  M     +PN  TY  ++ 
Sbjct: 25  AHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRLIA 84

Query: 383 EYCRHGKIADAKSFL 339
            YC  G I  A   L
Sbjct: 85  SYCNVGDIEGASKIL 99



 Score = 39.7 bits (91), Expect = 0.010
 Identities = 24/113 (21%), Positives = 52/113 (46%)
 Frame = -3

Query: 674 EKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIF 495
           E    I   ++  GA  D   YN ++  Y +       +   ++M+ + + P+ VTY   
Sbjct: 23  EFAHRIWDTLQKLGAVYDVSHYNALLKVYLQNEYKFSPTDFLAKMEEANIQPNRVTYQRL 82

Query: 494 VKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSILQEYCRHGKIADAKSFLS 336
           + SY      E A  ++ +M T+     E  +++++  + R G + +A++ L+
Sbjct: 83  IASYCNVGDIEGASKILGFMKTKDLPVTEAVFSALVTGHARAGDMENAENILT 135

>AEP3_CANGA (Q6FKT1) ATPase expression protein 3|
          Length = 623

 Score = 40.0 bits (92), Expect = 0.007
 Identities = 19/78 (24%), Positives = 40/78 (51%), Gaps = 7/78 (8%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSE--- 543
           N +++ YS+  D   C  +  ++K  G +P+  +YN ++    +K  M++   + +E   
Sbjct: 222 NDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELLF 281

Query: 542 ----MKSSGLIPDIVTYN 501
               M+ +G+  D VT+N
Sbjct: 282 YLRNMQKNGIFCDTVTWN 299



 Score = 37.0 bits (84), Expect = 0.062
 Identities = 23/80 (28%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
 Frame = -3

Query: 611 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYV-------ANSMFEEAI 453
           YN ++Y Y +K        LF++MK  G  P+  TYNI + + V         S+  E +
Sbjct: 221 YNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILLLNLVKKVHMRKIRSIKNELL 280

Query: 452 DLVRYMVTRGCKPNERTYNS 393
             +R M   G   +  T+N+
Sbjct: 281 FYLRNMQKNGIFCDTVTWNT 300



 Score = 30.0 bits (66), Expect = 7.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 506 YNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSIL 387
           YN  +  Y     F    +L   M   GCKPN  TYN +L
Sbjct: 221 YNDILYFYSKKYDFATCRELFAQMKVEGCKPNTTTYNILL 260

>AEP3_YEAST (Q12089) ATPase expression protein 3|
          Length = 606

 Score = 37.0 bits (84), Expect = 0.062
 Identities = 26/104 (25%), Positives = 43/104 (41%), Gaps = 11/104 (10%)
 Frame = -3

Query: 611 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMF-------EEAI 453
           YN  IY +           +F++MK+ G  P+ +T+N+ +++ V NS         +E +
Sbjct: 224 YNDSIYFFSEHFDFASCREIFAQMKAEGTKPNTITFNLLLRNVVKNSHIRKTKHPDDEVL 283

Query: 452 DLVRYMVTRGCKPNERT----YNSILQEYCRHGKIADAKSFLSN 333
             +R M   G   +  T    YN +  E  R   I      L N
Sbjct: 284 FYLRSMRNHGVFADVITWTTCYNFLRDEVSRQLYIVQMGEHLGN 327

>PT309_YEAST (P32522) Protein PET309, mitochondrial precursor|
          Length = 965

 Score = 37.0 bits (84), Expect = 0.062
 Identities = 18/80 (22%), Positives = 35/80 (43%)
 Frame = -3

Query: 722 KHTNSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSE 543
           +H   LM+  +R+G+ +    + T++   G  P      +++YA+ + G        F  
Sbjct: 347 QHYGILMYTMARIGELDSVNKLYTQLLRRGMIPTYAVLQSLLYAHYKVGDFAACFSHFEL 406

Query: 542 MKSSGLIPDIVTYNIFVKSY 483
            K   + P   T+ I +K Y
Sbjct: 407 FKKYDITPSTATHTIMLKVY 426

>RPOM_MOUSE (Q8BKF1) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1207

 Score = 35.8 bits (81), Expect = 0.14
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = -3

Query: 617 YSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY 504
           + YNT++  + RKG  +E   +F  +K +GL PD+ +Y
Sbjct: 234 HMYNTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSY 271



 Score = 32.0 bits (71), Expect = 2.0
 Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQ-MKEASRLFSEMK 537
           N++M  ++R G   +   +   +K +G  PD  SY   +   GR+ Q ++   R   +M 
Sbjct: 237 NTVMLGWARKGSFRELVYVFLMLKDAGLSPDLCSYAAALQCMGRRDQDVRTIQRCLKQMM 296

Query: 536 SSGLIPDIV 510
             G  P ++
Sbjct: 297 EEGFQPQLL 305

>AEP3_ASHGO (Q750L0) ATPase expression protein 3|
          Length = 536

 Score = 31.6 bits (70), Expect = 2.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -3

Query: 611 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVAN 474
           +N +IY +G+K         +S+MK     P+I TY +   + + N
Sbjct: 216 FNDLIYYFGKKSDYASCREYYSQMKLEKKTPNIETYRLLFLNLLKN 261

>RPOM_HUMAN (O00411) DNA-directed RNA polymerase, mitochondrial precursor (EC|
           2.7.7.6) (MtRPOL)
          Length = 1230

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = -3

Query: 611 YNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTY 504
           YN ++  + R+G  KE   +   +K +GL PD+++Y
Sbjct: 264 YNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 299



 Score = 30.0 bits (66), Expect = 7.6
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
 Frame = -3

Query: 713 NSLMHMYSRLGDCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQ-MKEASRLFSEMK 537
           N++M  ++R G  ++   +L  +K +G  PD  SY   +   GR+ Q      R   +M 
Sbjct: 265 NAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 324

Query: 536 SSGL 525
             GL
Sbjct: 325 QEGL 328

>MYCPP_HUMAN (Q7Z401) C-myc promoter-binding protein|
          Length = 1863

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = -3

Query: 626 PDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANS 471
           PD   Y  ++   G+  Q   A R+  EM+ +G+ P+ +TY  + K+ + ++
Sbjct: 808 PDEVCYRILMQLCGQYDQPVLAVRVLFEMQKAGIDPNAITYGYYNKAVLEST 859

>GPMA_STRCO (P33158) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 252

 Score = 31.2 bits (69), Expect = 3.4
 Identities = 21/64 (32%), Positives = 35/64 (54%)
 Frame = -3

Query: 581 KGQMKEASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERT 402
           KG+ KEA+R    +K +GL+PD+V  ++  ++     +  EA D     V R  + NER 
Sbjct: 34  KGE-KEATRGGELLKDAGLLPDVVHTSVQKRAIRTAQLALEAADRHWIPVHRHWRLNERH 92

Query: 401 YNSI 390
           Y ++
Sbjct: 93  YGAL 96

>GPMA_LEIXX (Q6ADH3) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase|
           (EC 5.4.2.1) (Phosphoglyceromutase) (PGAM)
           (BPG-dependent PGAM) (dPGM)
          Length = 249

 Score = 30.8 bits (68), Expect = 4.5
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = -3

Query: 566 EASRLFSEMKSSGLIPDIVTYNIFVKSYVANSMFEEAIDLVRYMVTRGCKPNERTYNSI 390
           EA R    +  SGL+PDI+  ++  ++    +   +A D +   V R  + NER Y ++
Sbjct: 38  EAKRAGELLAESGLVPDILYTSLLTRAIQTANHALDAADRLWIPVVRSWRLNERHYGAL 96

>PUR4_SCHPO (O14228) Probable phosphoribosylformylglycinamidine synthase (EC|
           6.3.5.3) (FGAM synthase) (FGAMS) (Formylglycinamide
           ribotide amidotransferase) (FGARAT) (Formylglycinamide
           ribotide synthetase)
          Length = 1323

 Score = 29.6 bits (65), Expect = 10.0
 Identities = 18/83 (21%), Positives = 39/83 (46%), Gaps = 6/83 (7%)
 Frame = -3

Query: 680 DCEKCENILTEIKSSGARPDRYSYNTMIYAYGRKGQMKEASRLFSEMKSSGLIPDI---- 513
           +CE    IL++++ S  +PD     TM+Y + R G +   S   + + +     D+    
Sbjct: 46  NCESLRPILSDLQESEFKPDG---TTMVYVFPRPGTISPWSSKATNIANVCGYKDVIRIE 102

Query: 512 --VTYNIFVKSYVANSMFEEAID 450
             + Y++  K  ++  M + A++
Sbjct: 103 RGIAYSVVFKDDISEEMLKSALN 125


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,507,259
Number of Sequences: 219361
Number of extensions: 1967930
Number of successful extensions: 4004
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 3882
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3992
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7536258401
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)