ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4p22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_191286.1| Oryza sativa (japonica cultivar-group), predic... 56 3e-05
2ref|NM_193187.1| Oryza sativa (japonica cultivar-group), predic... 56 3e-05
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
4dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
5dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic D... 56 3e-05
6dbj|AK102373.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
7dbj|AK060989.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 3e-05
8gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, compl... 44 0.096
9gb|AC146159.2| Pan troglodytes BAC clone RP43-36O19 from 7, comp... 44 0.096
10gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, comp... 44 0.096
11gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-1... 44 0.096
12emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome;... 38 5.9
13gb|AC061708.17| Homo sapiens 3 BAC RP11-654K19 (Roswell Park Can... 38 5.9
14gb|AC117476.6| Homo sapiens 3 BAC RP11-726H11 (Roswell Park Canc... 38 5.9
15dbj|AB050379.1| Pseudobagrus ichikawai DNA, microsatellite, clon... 38 5.9
16gb|AC104667.5| Homo sapiens BAC clone RP11-810D14 from 2, comple... 38 5.9
17dbj|AK116052.1| Ciona intestinalis cDNA, clone:citb005m16, full ... 38 5.9 
>ref|NM_191286.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1200

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 84   gccttnaacccagcagccccattcaagccccagac 118
            ||||| ||||||||||| |||||||||||||||||
Sbjct: 1145 gccttcaacccagcagctccattcaagccccagac 1111
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>ref|NM_193187.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1017

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                              
Query: 84  gccttnaacccagcagccccattcaagccccagac 118
           ||||| ||||||||||| |||||||||||||||||
Sbjct: 962 gccttcaacccagcagctccattcaagccccagac 928
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                   
Query: 84       gccttnaacccagcagccccattcaagccccagac 118
                ||||| ||||||||||| |||||||||||||||||
Sbjct: 31746285 gccttcaacccagcagctccattcaagccccagac 31746251



 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                   
Query: 84       gccttnaacccagcagccccattcaagccccagac 118
                ||||| ||||||||||| |||||||||||||||||
Sbjct: 19126425 gccttcaacccagcagctccattcaagccccagac 19126459
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>dbj|AP003350.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0702H08
          Length = 166899

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Plus

                                                
Query: 84    gccttnaacccagcagccccattcaagccccagac 118
             ||||| ||||||||||| |||||||||||||||||
Sbjct: 91842 gccttcaacccagcagctccattcaagccccagac 91876
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>dbj|AP003375.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OJ1414_E05
          Length = 105222

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                                
Query: 84    gccttnaacccagcagccccattcaagccccagac 118
             ||||| ||||||||||| |||||||||||||||||
Sbjct: 24323 gccttcaacccagcagctccattcaagccccagac 24289
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>dbj|AK102373.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091N05, full
            insert sequence
          Length = 1630

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 84   gccttnaacccagcagccccattcaagccccagac 118
            ||||| ||||||||||| |||||||||||||||||
Sbjct: 1290 gccttcaacccagcagctccattcaagccccagac 1256
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>dbj|AK060989.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-203-C09, full
            insert sequence
          Length = 1626

 Score = 56.0 bits (28), Expect = 3e-05
 Identities = 33/35 (94%)
 Strand = Plus / Minus

                                               
Query: 84   gccttnaacccagcagccccattcaagccccagac 118
            ||||| ||||||||||| |||||||||||||||||
Sbjct: 1291 gccttcaacccagcagctccattcaagccccagac 1257
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>gb|AC145905.4| Pan troglodytes BAC clone RP43-9I21 from 7, complete sequence
          Length = 187893

 Score = 44.1 bits (22), Expect = 0.096
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 55    taaccatggcaataagaatccc 76
             ||||||||||||||||||||||
Sbjct: 54182 taaccatggcaataagaatccc 54161
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>gb|AC146159.2| Pan troglodytes BAC clone RP43-36O19 from 7, complete sequence
          Length = 163991

 Score = 44.1 bits (22), Expect = 0.096
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 55  taaccatggcaataagaatccc 76
           ||||||||||||||||||||||
Sbjct: 335 taaccatggcaataagaatccc 314
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>gb|AC018664.11| Homo sapiens chromosome 7 clone RP11-109E9, complete sequence
          Length = 114848

 Score = 44.1 bits (22), Expect = 0.096
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 55    taaccatggcaataagaatccc 76
             ||||||||||||||||||||||
Sbjct: 92864 taaccatggcaataagaatccc 92843
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>gb|AC008080.1|AC008080 Homo sapiens clone RP11-89N17 from 7p14-15, complete sequence
          Length = 178635

 Score = 44.1 bits (22), Expect = 0.096
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 55   taaccatggcaataagaatccc 76
            ||||||||||||||||||||||
Sbjct: 4136 taaccatggcaataagaatccc 4115
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>emb|BX572101.1| Prochlorococcus marinus MIT9313 complete genome; segment 7/7
          Length = 318136

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 63    gcaataagaatcccgatgc 81
             |||||||||||||||||||
Sbjct: 50831 gcaataagaatcccgatgc 50813
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>gb|AC061708.17| Homo sapiens 3 BAC RP11-654K19 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 166979

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 54   ctaaccatggcaataagaa 72
            |||||||||||||||||||
Sbjct: 1629 ctaaccatggcaataagaa 1647
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>gb|AC117476.6| Homo sapiens 3 BAC RP11-726H11 (Roswell Park Cancer Institute Human
           BAC Library) complete sequence
          Length = 92001

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 54  ctaaccatggcaataagaa 72
           |||||||||||||||||||
Sbjct: 696 ctaaccatggcaataagaa 678
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>dbj|AB050379.1| Pseudobagrus ichikawai DNA, microsatellite, clone:Pi-m48
          Length = 121

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                              
Query: 90  aacccagcagccccattca 108
           |||||||||||||||||||
Sbjct: 39  aacccagcagccccattca 21
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>gb|AC104667.5| Homo sapiens BAC clone RP11-810D14 from 2, complete sequence
          Length = 95682

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 102   ccattcaagccccagacac 120
             |||||||||||||||||||
Sbjct: 19013 ccattcaagccccagacac 19031
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>dbj|AK116052.1| Ciona intestinalis cDNA, clone:citb005m16, full insert sequence
          Length = 2202

 Score = 38.2 bits (19), Expect = 5.9
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                              
Query: 105 ttcaagccccagacacgga 123
           |||||||||||||||||||
Sbjct: 642 ttcaagccccagacacgga 660


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 582,855
Number of Sequences: 3902068
Number of extensions: 582855
Number of successful extensions: 35233
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35196
Number of HSP's gapped (non-prelim): 37
length of query: 127
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 106
effective length of database: 17,151,101,840
effective search space: 1818016795040
effective search space used: 1818016795040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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