Clone Information

BLAST Search Result

Clone Name	rbags5e22
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	emb\|AJ579857.1\|TAE579857 Triticum aestivum partial mRNA for GDP-...	341	2e-90
2	ref\|XM_506728.1\| PREDICTED Oryza sativa (japonica cultivar-group...	250	6e-63
3	ref\|XM_464259.1\| Oryza sativa (japonica cultivar-group), mRNA	250	6e-63
4	emb\|AJ831493.1\| Oryza sativa mRNA for protein-O-fucosyltransfera...	250	6e-63
5	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	250	6e-63
6	dbj\|AP005071.3\| Oryza sativa (japonica cultivar-group) genomic D...	250	6e-63
7	dbj\|AK073486.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	250	6e-63
8	dbj\|AK073338.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	250	6e-63
9	gb\|AF358765.1\| Oryza sativa clone Osh16 unknown protein mRNA, pa...	242	1e-60
10	emb\|AJ831494.1\| Saccharum officinarum mRNA for protein-O-fucosyl...	234	3e-58
11	ref\|XM_756437.1\| Ustilago maydis 521 hypothetical protein (UM053...	42	2.5
12	ref\|NM_111405.2\| Arabidopsis thaliana unknown protein AT3G05320 ...	40	9.9
13	ref\|NM_121532.2\| Arabidopsis thaliana unknown protein AT5G15280 ...	40	9.9
14	gb\|AC113446.10\| Mus musculus chromosome 5, clone RP23-258C6, com...	40	9.9
15	gb\|AC144927.5\| Mus musculus chromosome 5, clone RP23-464P20, com...	40	9.9
16	gb\|AC118676.6\| Mus musculus chromosome 7, clone RP24-178N18, com...	40	9.9
17	gb\|BT015041.1\| Arabidopsis thaliana At3g05320 gene, complete cds	40	9.9
18	gb\|AC009177.7\|ATAC009177 Arabidopsis thaliana chromosome III BAC...	40	9.9
19	gb\|AE014307.1\| Homo sapiens chromosome 13q34 schizophrenia regio...	40	9.9
20	gb\|AC109152.13\| Mus musculus chromosome 18, clone RP23-166J4, co...	40	9.9
21	emb\|AL445235.30\| Human DNA sequence from clone RP1-65J11 on chro...	40	9.9
22	emb\|AL358855.16\| Human DNA sequence from clone RP11-317H7 on chr...	40	9.9
23	emb\|AL357507.9\| Human DNA sequence from clone RP11-694J20 on chr...	40	9.9
24	emb\|X15853.1\|LETAP1 Tomato TAP1 gene for anionic peroxidase	40	9.9
25	gb\|AC158763.6\| Mus musculus chromosome 18, clone RP23-343L17, co...	40	9.9
26	emb\|AL353993.1\|ATF8M21 Arabidopsis thaliana DNA chromosome 5, BA...	40	9.9
27	gb\|AC158355.2\| Mus musculus BAC clone RP24-374N16 from chromosom...	40	9.9
28	gb\|AC110717.11\| Homo sapiens 3 BAC RP11-419H8 (Roswell Park Canc...	40	9.9
29	gb\|AC069427.10\| Homo sapiens 3 BAC RP11-371I22 (Roswell Park Can...	40	9.9
30	gb\|S63739.1\| tap1=anionic peroxidase {promoter} [tomato, Genomic...	40	9.9
31	emb\|BX294659.9\| Zebrafish DNA sequence from clone DKEYP-15D12 in...	40	9.9
32	gb\|AC124817.2\| Branchiostoma floridae, clone -10F3, complete seq...	40	9.9
33	emb\|AL672090.5\| Mouse DNA sequence from clone RP23-322K21 on chr...	40	9.9
34	emb\|AL646052.1\| Ralstonia solanacearum GMI1000 chromosome comple...	40	9.9
35	gb\|BT002034.1\| Arabidopsis thaliana unknown protein (At3g05320) ...	40	9.9
36	gb\|AC141896.5\| Mus musculus BAC clone RP23-238B2 from 5, complet...	40	9.9
37	emb\|AL645789.14\| Zebrafish DNA sequence from clone RP71-11B17 in...	40	9.9
38	emb\|AL355888.3\|CNS05TCZ Human chromosome 14 DNA sequence BAC R-3...	40	9.9
39	gb\|AE000513.1\| Deinococcus radiodurans R1 chromosome 1, complete...	40	9.9
40	gb\|AC107371.17\| Mus musculus chromosome 7, clone RP24-66D2, comp...	40	9.9
41	gb\|CP000159.1\| Salinibacter ruber DSM 13855, complete genome	40	9.9
42	emb\|AL928918.8\| Mouse DNA sequence from clone RP23-403G13 on chr...	40	9.9
43	emb\|AL671892.6\| Mouse DNA sequence from clone RP23-188D5 on chro...	40	9.9

>emb|AJ579857.1|TAE579857 Triticum aestivum partial mRNA for GDP-fucose
            protein-O-fucosyltransferase 1 (fut12 gene)
          Length = 1685

 Score =  341 bits (172), Expect = 2e-90
 Identities = 259/288 (89%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
            ||||||||||||||||||||| ||||| || |||||||||||||| ||||||||||||||
Sbjct: 1022 tcagtggcaggagatgttatttgttccgtagcttatgcgctgaaggcttgtgtccaacat 963

                                                                        
Query: 486  atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
            ||||||||||||| | || ||||| ||||||||||||||||||||||| || || |||||
Sbjct: 962  atctgtcatccatctttgaggcccgccatcatctccgatgacattgtacgcgtatgacga 903

                                                                        
Query: 546  cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
            ||||||||||||||| |||||||||||| ||  ||| |  ||| | | ||||||||||||
Sbjct: 902  cagcccaacatcctcgccacatgagctttccacccccagcttaaacatcctttctgttct 843

                                                                        
Query: 606  ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
             ||||| |||||||||||||||||||| ||||| |||||||||||||||||||| |||||
Sbjct: 842  agacaaaactacaaggttggaaaatgttgagaagctattgccaacaaacacatctgctct 783

                                                            
Query: 666  tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcct 713
             ||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct: 782  cgcacacacctcaaagtcaatggcagactttataagataaggctgcct 735



 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 30/31 (96%)
 Strand = Plus / Minus

                                           
Query: 208  gctcaggaaacaacttttgtacacactcaca 238
            |||||||||| ||||||||||||||||||||
Sbjct: 1232 gctcaggaaagaacttttgtacacactcaca 1202



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 32/34 (94%)
 Strand = Plus / Minus

                                              
Query: 298  tgtctagattctaacatggaaagtaccgtcgagc 331
            |||| |||||||| ||||||||||||||||||||
Sbjct: 1144 tgtccagattctagcatggaaagtaccgtcgagc 1111

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>ref|XM_506728.1| PREDICTED Oryza sativa (japonica cultivar-group), P0669G09.11 mRNA
          Length = 2109

 Score =  250 bits (126), Expect = 6e-63
 Identities = 249/290 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
            ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 1815 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 1756

                                                                        
Query: 486  atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
            ||||||||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 1755 atctgtcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 1696

                                                                        
Query: 546  cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
             ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 1695 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 1636

                                                                        
Query: 606  ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
             |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1635 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 1576

                                                              
Query: 666  tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
             |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 1575 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 1526

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>ref|XM_464259.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2042

 Score =  250 bits (126), Expect = 6e-63
 Identities = 249/290 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
            ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 1748 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 1689

                                                                        
Query: 486  atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
            ||||||||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 1688 atctgtcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 1629

                                                                        
Query: 546  cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
             ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 1628 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 1569

                                                                        
Query: 606  ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
             |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1568 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 1509

                                                              
Query: 666  tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
             |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 1508 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 1459

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>emb|AJ831493.1| Oryza sativa mRNA for protein-O-fucosyltransferase 1 (fut12 gene)
          Length = 1326

 Score =  250 bits (126), Expect = 6e-63
 Identities = 249/290 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
            ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 1326 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 1267

                                                                        
Query: 486  atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
            ||||||||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 1266 atctgtcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 1207

                                                                        
Query: 546  cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
             ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 1206 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 1147

                                                                        
Query: 606  ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
             |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1146 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 1087

                                                              
Query: 666  tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
             |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 1086 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 1037

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  250 bits (126), Expect = 6e-63
 Identities = 249/290 (85%)
 Strand = Plus / Minus

                                                                           
Query: 426     tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
               ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 3705040 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 3704981

                                                                           
Query: 486     atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
               ||||||||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 3704980 atctgtcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 3704921

                                                                           
Query: 546     cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
                ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 3704920 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 3704861

                                                                           
Query: 606     ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
                |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 3704860 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 3704801

                                                                 
Query: 666     tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
                |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 3704800 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 3704751

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>dbj|AP005071.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0669G09
          Length = 140067

 Score =  250 bits (126), Expect = 6e-63
 Identities = 249/290 (85%)
 Strand = Plus / Minus

                                                                         
Query: 426   tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
             ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 45357 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 45298

                                                                         
Query: 486   atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
             ||||||||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 45297 atctgtcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 45238

                                                                         
Query: 546   cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
              ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 45237 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 45178

                                                                         
Query: 606   ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
              |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 45177 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 45118

                                                               
Query: 666   tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
              |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 45117 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 45068

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>dbj|AK073486.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033043N20, full
            insert sequence
          Length = 2038

 Score =  250 bits (126), Expect = 6e-63
 Identities = 249/290 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
            ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 1744 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 1685

                                                                        
Query: 486  atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
            ||||||||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 1684 atctgtcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 1625

                                                                        
Query: 546  cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
             ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 1624 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 1565

                                                                        
Query: 606  ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
             |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1564 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 1505

                                                              
Query: 666  tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
             |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 1504 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 1455

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>dbj|AK073338.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033029D16, full
            insert sequence
          Length = 2108

 Score =  250 bits (126), Expect = 6e-63
 Identities = 249/290 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
            ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 1814 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 1755

                                                                        
Query: 486  atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
            ||||||||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 1754 atctgtcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 1695

                                                                        
Query: 546  cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
             ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 1694 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 1635

                                                                        
Query: 606  ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
             |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 1634 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 1575

                                                              
Query: 666  tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
             |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 1574 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 1525

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>gb|AF358765.1| Oryza sativa clone Osh16 unknown protein mRNA, partial cds
          Length = 894

 Score =  242 bits (122), Expect = 1e-60
 Identities = 248/290 (85%)
 Strand = Plus / Minus

                                                                       
Query: 426 tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
           ||||||||| ||||| || |||||||| ||||| | |   || || ||||||||  ||||
Sbjct: 573 tcagtggcatgagatattgttcgttccgtaactcaagttttggaggcttgtgtctgacat 514

                                                                       
Query: 486 atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
           ||||| ||||||| |||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct: 513 atctggcatccatctctgtggcccgccatcgtctccaataacattgtaggcataggatga 454

                                                                       
Query: 546 cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
            ||||| |||| ||| ||||||||||||||||  || |  ||||||||||||| ||||||
Sbjct: 453 aagcccgacattctctccacatgagcttgcctctcccatgttatatagcctttgtgttct 394

                                                                       
Query: 606 ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
            |||| ||| ||||||||||||||||| ||||| |||||||| |||||||||||||||||
Sbjct: 393 tgacagcaccacaaggttggaaaatgttgagaagctattgcctacaaacacatccgctct 334

                                                             
Query: 666 tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctat 715
            |||||||||||||||||||| || ||||||||||| ||||| |||||||
Sbjct: 333 cgcacatacctcaaagtcaatagcggactttataagataaggttgcctat 284

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>emb|AJ831494.1| Saccharum officinarum mRNA for protein-O-fucosyltransferase 1 (fut12
            gene)
          Length = 2624

 Score =  234 bits (118), Expect = 3e-58
 Identities = 250/294 (85%)
 Strand = Plus / Minus

                                                                        
Query: 426  tcagtggcaggagatgttattcgttccataacttatgcgctgaagacttgtgtccaacat 485
            ||||||||| |||| ||||||||||||||||||||  |  || || ||||| ||| ||||
Sbjct: 2281 tcagtggcatgagacgttattcgttccataacttaatctttgcaggcttgtatccgacat 2222

                                                                        
Query: 486  atctgtcatccatttctgtggcccaccatcatctccgatgacattgtatgcataggacga 545
            ||||||||||||| |||| || ||||||||||| || ||||||||||||||||| || ||
Sbjct: 2221 atctgtcatccatctctgcggtccaccatcatcgcccatgacattgtatgcatacgatga 2162

                                                                        
Query: 546  cagcccaacatcctcaccacatgagcttgccttccctaatttatatagcctttctgttct 605
             |||||||  | ||| ||||| ||||| ||||| ||||  ||||||| ||||||||||||
Sbjct: 2161 aagcccaatgttctcgccacaagagctcgcctttcctaggttatataacctttctgttct 2102

                                                                        
Query: 606  ggacaacactacaaggttggaaaatgtcgagaaactattgccaacaaacacatccgctct 665
            ||||| ||| || |||||||| ||||| ||||| |||||||||||||||||||| | |||
Sbjct: 2101 ggacagcacaacgaggttggagaatgttgagaagctattgccaacaaacacatctgttct 2042

                                                                  
Query: 666  tgcacatacctcaaagtcaatggcagactttataaggtaaggctgcctatcata 719
             |  || ||||||||||| ||||||||||||||||| || ||||||| ||||||
Sbjct: 2041 cgagcacacctcaaagtcgatggcagactttataagatatggctgccgatcata 1988

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>ref|XM_756437.1| Ustilago maydis 521 hypothetical protein (UM05383.1) partial mRNA
          Length = 6060

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 328  gagctgctgcacctgctcgtc 348
            |||||||||||||||||||||
Sbjct: 2700 gagctgctgcacctgctcgtc 2680

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>ref|NM_111405.2| Arabidopsis thaliana unknown protein AT3G05320 mRNA, complete cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 631 gtcgagaaactattgccaacaaacacatccgctctt 666
           ||||| || ||||| |||||||| ||||||||||||
Sbjct: 908 gtcgaaaagctattaccaacaaaaacatccgctctt 873

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>ref|NM_121532.2| Arabidopsis thaliana unknown protein AT5G15280 mRNA, complete cds
          Length = 3848

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 640 ctattgccaacaaacacatc 659
           ||||||||||||||||||||
Sbjct: 983 ctattgccaacaaacacatc 964

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>gb|AC113446.10| Mus musculus chromosome 5, clone RP23-258C6, complete sequence
          Length = 158563

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 479    ccaacatatctgtcatccat 498
              ||||||||||||||||||||
Sbjct: 140489 ccaacatatctgtcatccat 140508

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>gb|AC144927.5| Mus musculus chromosome 5, clone RP23-464P20, complete sequence
          Length = 192593

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 479   ccaacatatctgtcatccat 498
             ||||||||||||||||||||
Sbjct: 28833 ccaacatatctgtcatccat 28852

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>gb|AC118676.6| Mus musculus chromosome 7, clone RP24-178N18, complete sequence
          Length = 149930

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   acacactcacagaacacaca 247
             ||||||||||||||||||||
Sbjct: 74450 acacactcacagaacacaca 74431

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>gb|BT015041.1| Arabidopsis thaliana At3g05320 gene, complete cds
          Length = 1056

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 631 gtcgagaaactattgccaacaaacacatccgctctt 666
           ||||| || ||||| |||||||| ||||||||||||
Sbjct: 839 gtcgaaaagctattaccaacaaaaacatccgctctt 804

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>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete
              sequence
          Length = 140064

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                                  
Query: 631    gtcgagaaactattgccaacaaacacatccgctctt 666
              ||||| || ||||| |||||||| ||||||||||||
Sbjct: 109776 gtcgaaaagctattaccaacaaaaacatccgctctt 109811

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>gb|AE014307.1| Homo sapiens chromosome 13q34 schizophrenia region contig 1 section 4
             of 11 of the complete sequence
          Length = 250029

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 498   tttctgtggcccaccatcat 517
             ||||||||||||||||||||
Sbjct: 72755 tttctgtggcccaccatcat 72736

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>gb|AC109152.13| Mus musculus chromosome 18, clone RP23-166J4, complete sequence
          Length = 206894

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 686    tggcagactttataaggtaa 705
              ||||||||||||||||||||
Sbjct: 135147 tggcagactttataaggtaa 135166

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>emb|AL445235.30| Human DNA sequence from clone RP1-65J11 on chromosome 1 Contains the 5'
             end of the PUM1 gene for pumilio homolog 1 (Drosophila),
             the SDC3 gene for syndecan 3 (N-syndecan), two novel genes
             and a CpG island, complete sequence
          Length = 167478

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 542   acgacagcccaacatcctca 561
             ||||||||||||||||||||
Sbjct: 49424 acgacagcccaacatcctca 49443

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>emb|AL358855.16| Human DNA sequence from clone RP11-317H7 on chromosome 13, complete
              sequence
          Length = 156075

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 498    tttctgtggcccaccatcat 517
              ||||||||||||||||||||
Sbjct: 123434 tttctgtggcccaccatcat 123415

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>emb|AL357507.9| Human DNA sequence from clone RP11-694J20 on chromosome 6 Contains a CpG
              island, complete sequence
          Length = 178828

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 178    tgcaaactaaaaactgttca 197
              ||||||||||||||||||||
Sbjct: 171766 tgcaaactaaaaactgttca 171747

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>emb|X15853.1|LETAP1 Tomato TAP1 gene for anionic peroxidase
          Length = 2907

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  atgtttcatgtgaaagtgac 94
           ||||||||||||||||||||
Sbjct: 253 atgtttcatgtgaaagtgac 234

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>gb|AC158763.6| Mus musculus chromosome 18, clone RP23-343L17, complete sequence
          Length = 204022

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 686    tggcagactttataaggtaa 705
              ||||||||||||||||||||
Sbjct: 186702 tggcagactttataaggtaa 186683

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>emb|AL353993.1|ATF8M21 Arabidopsis thaliana DNA chromosome 5, BAC clone F8M21 (ESSA project)
          Length = 103996

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 640   ctattgccaacaaacacatc 659
             ||||||||||||||||||||
Sbjct: 67187 ctattgccaacaaacacatc 67168

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>gb|AC158355.2| Mus musculus BAC clone RP24-374N16 from chromosome 9, complete sequence
          Length = 172612

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 227    tacacactcacagaacacac 246
              ||||||||||||||||||||
Sbjct: 140257 tacacactcacagaacacac 140276

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>gb|AC110717.11| Homo sapiens 3 BAC RP11-419H8 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 56528

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 127   cctcccagtgaaccacagaa 146
             ||||||||||||||||||||
Sbjct: 18135 cctcccagtgaaccacagaa 18116

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>gb|AC069427.10| Homo sapiens 3 BAC RP11-371I22 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 133858

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   tgatacaaatgtttcatgtg 86
            ||||||||||||||||||||
Sbjct: 6413 tgatacaaatgtttcatgtg 6394

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>gb|S63739.1| tap1=anionic peroxidase {promoter} [tomato, Genomic, 682 nt]
          Length = 682

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 75  atgtttcatgtgaaagtgac 94
           ||||||||||||||||||||
Sbjct: 505 atgtttcatgtgaaagtgac 486

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>emb|BX294659.9| Zebrafish DNA sequence from clone DKEYP-15D12 in linkage group 12,
              complete sequence
          Length = 171920

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 261    caaagtcatttcagaagtgt 280
              ||||||||||||||||||||
Sbjct: 116954 caaagtcatttcagaagtgt 116935

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>gb|AC124817.2| Branchiostoma floridae, clone -10F3, complete sequence
          Length = 133980

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 64    acttgatacaaatgtttcat 83
             ||||||||||||||||||||
Sbjct: 95045 acttgatacaaatgtttcat 95026

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>emb|AL672090.5| Mouse DNA sequence from clone RP23-322K21 on chromosome X, complete
              sequence
          Length = 211450

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 249    ggaattcttggccaaagtca 268
              ||||||||||||||||||||
Sbjct: 147110 ggaattcttggccaaagtca 147129

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>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence
          Length = 3716413

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 330     gctgctgcacctgctcgtct 349
               ||||||||||||||||||||
Sbjct: 3380818 gctgctgcacctgctcgtct 3380837

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>gb|BT002034.1| Arabidopsis thaliana unknown protein (At3g05320) mRNA, complete cds
          Length = 1234

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 32/36 (88%)
 Strand = Plus / Minus

                                               
Query: 631 gtcgagaaactattgccaacaaacacatccgctctt 666
           ||||| || ||||| |||||||| ||||||||||||
Sbjct: 908 gtcgaaaagctattaccaacaaaaacatccgctctt 873

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>gb|AC141896.5| Mus musculus BAC clone RP23-238B2 from 5, complete sequence
          Length = 240890

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 548    gcccaacatcctcaccacat 567
              ||||||||||||||||||||
Sbjct: 207043 gcccaacatcctcaccacat 207062

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>emb|AL645789.14| Zebrafish DNA sequence from clone RP71-11B17 in linkage group 22,
             complete sequence
          Length = 167635

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   acacactcacagaacacaca 247
             ||||||||||||||||||||
Sbjct: 79904 acacactcacagaacacaca 79885

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>emb|AL355888.3|CNS05TCZ Human chromosome 14 DNA sequence BAC R-322L17 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 214852

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 173   agctctgcaaactaaaaact 192
             ||||||||||||||||||||
Sbjct: 98705 agctctgcaaactaaaaact 98724

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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 327    cgagctgctgcacctgctcg 346
              ||||||||||||||||||||
Sbjct: 392387 cgagctgctgcacctgctcg 392406

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>gb|AC107371.17| Mus musculus chromosome 7, clone RP24-66D2, complete sequence
          Length = 214373

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 228   acacactcacagaacacaca 247
             ||||||||||||||||||||
Sbjct: 15835 acacactcacagaacacaca 15816

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>gb|CP000159.1| Salinibacter ruber DSM 13855, complete genome
          Length = 3551823

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 329    agctgctgcacctgctcgtc 348
              ||||||||||||||||||||
Sbjct: 438637 agctgctgcacctgctcgtc 438618

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>emb|AL928918.8| Mouse DNA sequence from clone RP23-403G13 on chromosome 2, complete
             sequence
          Length = 158255

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 553   acatcctcaccacatgagct 572
             ||||||||||||||||||||
Sbjct: 83912 acatcctcaccacatgagct 83893

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>emb|AL671892.6| Mouse DNA sequence from clone RP23-188D5 on chromosome 4, complete
              sequence
          Length = 111620

 Score = 40.1 bits (20), Expect = 9.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 262    aaagtcatttcagaagtgtgacat 285
              ||||||||||||| ||||||||||
Sbjct: 102595 aaagtcatttcaggagtgtgacat 102572


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,931,436
Number of Sequences: 3902068
Number of extensions: 6931436
Number of successful extensions: 135243
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 135050
Number of HSP's gapped (non-prelim): 184
length of query: 723
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 700
effective length of database: 17,143,297,704
effective search space: 12000308392800
effective search space used: 12000308392800
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result