| Clone Name | rbags5e21 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL354769.17| Human DNA sequence from clone RP11-417G14 on chromosome X, complete sequence Length = 113526 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Minus Query: 89 caacttcaggcccatgccaagcc 111 ||||||||||||||||||||||| Sbjct: 41899 caacttcaggcccatgccaagcc 41877
>emb|CT573097.3| RP43-080H03, complete sequence Length = 174747 Score = 46.1 bits (23), Expect = 0.15 Identities = 23/23 (100%) Strand = Plus / Plus Query: 89 caacttcaggcccatgccaagcc 111 ||||||||||||||||||||||| Sbjct: 76150 caacttcaggcccatgccaagcc 76172
>ref|XM_518688.1| PREDICTED: Pan troglodytes similar to solute carrier family 22, member 16; fly-like putative organic ion transporter 2; organic cation transporter 6; carnitine transporter 2 (LOC462937), mRNA Length = 2727 Score = 42.1 bits (21), Expect = 2.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 588 tgcaagtggctatctcgtggt 608 ||||||||||||||||||||| Sbjct: 1374 tgcaagtggctatctcgtggt 1394
>gb|BT014633.1| Drosophila melanogaster RH58004 full insert cDNA Length = 2290 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 caaggatcaagcatccactg 202 |||||||||||||||||||| Sbjct: 411 caaggatcaagcatccactg 430
>gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosome 15, complete sequence Length = 190750 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 114 ggaagatatatactagtact 133 |||||||||||||||||||| Sbjct: 4997 ggaagatatatactagtact 5016
>gb|AC129604.3| Mus musculus BAC clone RP23-110O3 from 7, complete sequence Length = 189634 Score = 40.1 bits (20), Expect = 9.0 Identities = 26/28 (92%) Strand = Plus / Minus Query: 398 attcctctccaacatgccaagacgaaac 425 ||||||||||||| |||||||| ||||| Sbjct: 89703 attcctctccaacctgccaagaggaaac 89676
>gb|AF511583.1| Erigeron cuneifolius internal transcribed spacer 1, 5.8S ribosomal RNA gene, and internal transcribed spacer 2, complete sequence Length = 659 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 202 gtggtgggtaaaacaacgca 221 |||||||||||||||||||| Sbjct: 615 gtggtgggtaaaacaacgca 596
>gb|AC112217.2| Homo sapiens chromosome 3 clone CTD-2028L5, complete sequence Length = 156545 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 570 aaaaactgatttcttgcatg 589 |||||||||||||||||||| Sbjct: 28882 aaaaactgatttcttgcatg 28863
>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence Length = 201564 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 570 aaaaactgatttcttgcatg 589 |||||||||||||||||||| Sbjct: 32822 aaaaactgatttcttgcatg 32841
>ref|NM_166003.1| Drosophila melanogaster CG6145-RC, transcript variant C (CG6145), mRNA Length = 2255 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 caaggatcaagcatccactg 202 |||||||||||||||||||| Sbjct: 410 caaggatcaagcatccactg 429
>gb|AC091634.1|AC091634 Drosophila melanogaster, chromosome 2R, region 50A-50B, BAC clone BACR36J03, complete sequence Length = 159065 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 caaggatcaagcatccactg 202 |||||||||||||||||||| Sbjct: 82729 caaggatcaagcatccactg 82748
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 aagatatatactagtactacttaa 139 |||||||||||||||| ||||||| Sbjct: 17498005 aagatatatactagtagtacttaa 17497982
>gb|AC064846.5| Homo sapiens BAC clone RP11-59C11 from 2, complete sequence Length = 169988 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 cttcaggcccatgccaagcc 111 |||||||||||||||||||| Sbjct: 48300 cttcaggcccatgccaagcc 48281
>emb|BX088528.7| Zebrafish DNA sequence from clone CH211-226D23 in linkage group 1, complete sequence Length = 171618 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 acaacagttttggattaata 159 |||||||||||||||||||| Sbjct: 128455 acaacagttttggattaata 128474
>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0045A07 Length = 174165 Score = 40.1 bits (20), Expect = 9.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 116 aagatatatactagtactacttaa 139 |||||||||||||||| ||||||| Sbjct: 25954 aagatatatactagtagtacttaa 25931
>emb|AL953910.14| Zebrafish DNA sequence from clone DKEY-31E10 in linkage group 1, complete sequence Length = 190793 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 acaacagttttggattaata 159 |||||||||||||||||||| Sbjct: 155918 acaacagttttggattaata 155937
>gb|AE003818.3| Drosophila melanogaster chromosome 2R, section 32 of 73 of the complete sequence Length = 291923 Score = 40.1 bits (20), Expect = 9.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 caaggatcaagcatccactg 202 |||||||||||||||||||| Sbjct: 240786 caaggatcaagcatccactg 240767 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,616,540 Number of Sequences: 3902068 Number of extensions: 4616540 Number of successful extensions: 76241 Number of sequences better than 10.0: 17 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 76191 Number of HSP's gapped (non-prelim): 50 length of query: 656 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 633 effective length of database: 17,143,297,704 effective search space: 10851707446632 effective search space used: 10851707446632 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)