ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5e21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL354769.17| Human DNA sequence from clone RP11-417G14 on ch... 46 0.15
2emb|CT573097.3| RP43-080H03, complete sequence 46 0.15
3ref|XM_518688.1| PREDICTED: Pan troglodytes similar to solute ca... 42 2.3
4gb|BT014633.1| Drosophila melanogaster RH58004 full insert cDNA 40 9.0
5gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosom... 40 9.0
6gb|AC129604.3| Mus musculus BAC clone RP23-110O3 from 7, complet... 40 9.0
7gb|AF511583.1| Erigeron cuneifolius internal transcribed spacer ... 40 9.0
8gb|AC112217.2| Homo sapiens chromosome 3 clone CTD-2028L5, compl... 40 9.0
9gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, compl... 40 9.0
10ref|NM_166003.1| Drosophila melanogaster CG6145-RC, transcript v... 40 9.0
11gb|AC091634.1|AC091634 Drosophila melanogaster, chromosome 2R, r... 40 9.0
12dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
13gb|AC064846.5| Homo sapiens BAC clone RP11-59C11 from 2, complet... 40 9.0
14emb|BX088528.7| Zebrafish DNA sequence from clone CH211-226D23 i... 40 9.0
15dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic D... 40 9.0
16emb|AL953910.14| Zebrafish DNA sequence from clone DKEY-31E10 in... 40 9.0
17gb|AE003818.3| Drosophila melanogaster chromosome 2R, section 32... 40 9.0

>emb|AL354769.17| Human DNA sequence from clone RP11-417G14 on chromosome X, complete
             sequence
          Length = 113526

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 89    caacttcaggcccatgccaagcc 111
             |||||||||||||||||||||||
Sbjct: 41899 caacttcaggcccatgccaagcc 41877



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>emb|CT573097.3| RP43-080H03, complete sequence
          Length = 174747

 Score = 46.1 bits (23), Expect = 0.15
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                    
Query: 89    caacttcaggcccatgccaagcc 111
             |||||||||||||||||||||||
Sbjct: 76150 caacttcaggcccatgccaagcc 76172



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>ref|XM_518688.1| PREDICTED: Pan troglodytes similar to solute carrier family 22,
            member 16; fly-like putative organic ion transporter 2;
            organic cation transporter 6; carnitine transporter 2
            (LOC462937), mRNA
          Length = 2727

 Score = 42.1 bits (21), Expect = 2.3
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 588  tgcaagtggctatctcgtggt 608
            |||||||||||||||||||||
Sbjct: 1374 tgcaagtggctatctcgtggt 1394



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>gb|BT014633.1| Drosophila melanogaster RH58004 full insert cDNA
          Length = 2290

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 caaggatcaagcatccactg 202
           ||||||||||||||||||||
Sbjct: 411 caaggatcaagcatccactg 430



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>gb|AC116322.5| Mus musculus BAC clone RP23-273O16 from chromosome 15, complete
            sequence
          Length = 190750

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 114  ggaagatatatactagtact 133
            ||||||||||||||||||||
Sbjct: 4997 ggaagatatatactagtact 5016



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>gb|AC129604.3| Mus musculus BAC clone RP23-110O3 from 7, complete sequence
          Length = 189634

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 398   attcctctccaacatgccaagacgaaac 425
             ||||||||||||| |||||||| |||||
Sbjct: 89703 attcctctccaacctgccaagaggaaac 89676



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>gb|AF511583.1| Erigeron cuneifolius internal transcribed spacer 1, 5.8S ribosomal
           RNA gene, and internal transcribed spacer 2, complete
           sequence
          Length = 659

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 202 gtggtgggtaaaacaacgca 221
           ||||||||||||||||||||
Sbjct: 615 gtggtgggtaaaacaacgca 596



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>gb|AC112217.2| Homo sapiens chromosome 3 clone CTD-2028L5, complete sequence
          Length = 156545

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 570   aaaaactgatttcttgcatg 589
             ||||||||||||||||||||
Sbjct: 28882 aaaaactgatttcttgcatg 28863



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>gb|AC099054.2| Homo sapiens chromosome 3 clone RP11-489C3, complete sequence
          Length = 201564

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 570   aaaaactgatttcttgcatg 589
             ||||||||||||||||||||
Sbjct: 32822 aaaaactgatttcttgcatg 32841



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>ref|NM_166003.1| Drosophila melanogaster CG6145-RC, transcript variant C (CG6145),
           mRNA
          Length = 2255

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 183 caaggatcaagcatccactg 202
           ||||||||||||||||||||
Sbjct: 410 caaggatcaagcatccactg 429



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>gb|AC091634.1|AC091634 Drosophila melanogaster, chromosome 2R, region 50A-50B, BAC clone
             BACR36J03, complete sequence
          Length = 159065

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   caaggatcaagcatccactg 202
             ||||||||||||||||||||
Sbjct: 82729 caaggatcaagcatccactg 82748



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 116      aagatatatactagtactacttaa 139
                |||||||||||||||| |||||||
Sbjct: 17498005 aagatatatactagtagtacttaa 17497982



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>gb|AC064846.5| Homo sapiens BAC clone RP11-59C11 from 2, complete sequence
          Length = 169988

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 92    cttcaggcccatgccaagcc 111
             ||||||||||||||||||||
Sbjct: 48300 cttcaggcccatgccaagcc 48281



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>emb|BX088528.7| Zebrafish DNA sequence from clone CH211-226D23 in linkage group 1,
              complete sequence
          Length = 171618

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    acaacagttttggattaata 159
              ||||||||||||||||||||
Sbjct: 128455 acaacagttttggattaata 128474



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>dbj|AP005479.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0045A07
          Length = 174165

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 116   aagatatatactagtactacttaa 139
             |||||||||||||||| |||||||
Sbjct: 25954 aagatatatactagtagtacttaa 25931



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>emb|AL953910.14| Zebrafish DNA sequence from clone DKEY-31E10 in linkage group 1, complete
              sequence
          Length = 190793

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 140    acaacagttttggattaata 159
              ||||||||||||||||||||
Sbjct: 155918 acaacagttttggattaata 155937



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>gb|AE003818.3| Drosophila melanogaster chromosome 2R, section 32 of 73 of the complete
              sequence
          Length = 291923

 Score = 40.1 bits (20), Expect = 9.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 183    caaggatcaagcatccactg 202
              ||||||||||||||||||||
Sbjct: 240786 caaggatcaagcatccactg 240767


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,616,540
Number of Sequences: 3902068
Number of extensions: 4616540
Number of successful extensions: 76241
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 76191
Number of HSP's gapped (non-prelim): 50
length of query: 656
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 633
effective length of database: 17,143,297,704
effective search space: 10851707446632
effective search space used: 10851707446632
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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