ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5e20 |
|---|---|
| Clone Library Name | barley_pub |
>PORB_HORVU (Q42850) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 395 Score = 124 bits (311), Expect(2) = 4e-40 Identities = 62/65 (95%), Positives = 62/65 (95%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G EEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK Sbjct: 331 GYVSEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 390 Query: 92 LVGLA 78 LVGLA Sbjct: 391 LVGLA 395 Score = 58.5 bits (140), Expect(2) = 4e-40 Identities = 26/26 (100%), Positives = 26/26 (100%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFRLLFPPFQKYITKGYVS Sbjct: 309 LFREHIPLFRLLFPPFQKYITKGYVS 334
>PORA_CUCSA (Q41249) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 120 bits (300), Expect(2) = 1e-37 Identities = 59/65 (90%), Positives = 61/65 (93%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G E+EAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLS+EASD EKARKVWELSEK Sbjct: 334 GYVSEDEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSQEASDAEKARKVWELSEK 393 Query: 92 LVGLA 78 LVGLA Sbjct: 394 LVGLA 398 Score = 54.7 bits (130), Expect(2) = 1e-37 Identities = 23/26 (88%), Positives = 26/26 (100%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR+LFPPFQK+IT+GYVS Sbjct: 312 LFREHIPLFRILFPPFQKFITQGYVS 337
>POR_DAUCA (Q9SDT1) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 398 Score = 115 bits (289), Expect(2) = 5e-37 Identities = 57/65 (87%), Positives = 60/65 (92%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G E E+GKRLAQVVSEPSLTKSGVYWSWNK+SASFENQLSEEASD EKARKVWE+SEK Sbjct: 334 GYVSEAESGKRLAQVVSEPSLTKSGVYWSWNKDSASFENQLSEEASDVEKARKVWEVSEK 393 Query: 92 LVGLA 78 LVGLA Sbjct: 394 LVGLA 398 Score = 56.6 bits (135), Expect(2) = 5e-37 Identities = 25/26 (96%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR LFPPFQKYITKGYVS Sbjct: 312 LFREHIPLFRTLFPPFQKYITKGYVS 337
>POR_PEA (Q01289) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 399 Score = 112 bits (281), Expect(2) = 4e-36 Identities = 55/65 (84%), Positives = 59/65 (90%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G EEE+GKRLAQVVS+PSLTKSGVYWSWN SASFENQLS+EASD EKARKVWE+SEK Sbjct: 335 GYVSEEESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSQEASDAEKARKVWEVSEK 394 Query: 92 LVGLA 78 LVGLA Sbjct: 395 LVGLA 399 Score = 56.6 bits (135), Expect(2) = 4e-36 Identities = 25/26 (96%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR LFPPFQKYITKGYVS Sbjct: 313 LFREHIPLFRTLFPPFQKYITKGYVS 338
>PORA_ARATH (Q42536) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 405 Score = 112 bits (280), Expect(2) = 5e-36 Identities = 54/65 (83%), Positives = 59/65 (90%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G E EAGKRLAQVV++PSLTKSGVYWSWNK SASFENQLS+EASD EKAR+VWE+SEK Sbjct: 341 GYVSESEAGKRLAQVVADPSLTKSGVYWSWNKTSASFENQLSQEASDVEKARRVWEVSEK 400 Query: 92 LVGLA 78 LVGLA Sbjct: 401 LVGLA 405 Score = 56.6 bits (135), Expect(2) = 5e-36 Identities = 25/26 (96%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR LFPPFQKYITKGYVS Sbjct: 319 LFREHIPLFRTLFPPFQKYITKGYVS 344
>PORC_ARATH (O48741) Protochlorophyllide reductase C, chloroplast precursor (EC| 1.3.1.33) (PCR C) (NADPH-protochlorophyllide oxidoreductase C) (POR C) Length = 401 Score = 110 bits (275), Expect(2) = 5e-36 Identities = 53/65 (81%), Positives = 59/65 (90%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G EEEAGKRLAQVVS+PSL KSGVYWSWN NS+SFENQLS+EASD EKA+K+WE+SEK Sbjct: 337 GYVSEEEAGKRLAQVVSDPSLGKSGVYWSWNNNSSSFENQLSKEASDAEKAKKLWEVSEK 396 Query: 92 LVGLA 78 LVGLA Sbjct: 397 LVGLA 401 Score = 58.5 bits (140), Expect(2) = 5e-36 Identities = 26/26 (100%), Positives = 26/26 (100%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFRLLFPPFQKYITKGYVS Sbjct: 315 LFREHIPLFRLLFPPFQKYITKGYVS 340
>PORB_ARATH (P21218) Protochlorophyllide reductase B, chloroplast precursor (EC| 1.3.1.33) (PCR B) (NADPH-protochlorophyllide oxidoreductase B) (POR B) Length = 401 Score = 112 bits (279), Expect(2) = 7e-36 Identities = 55/65 (84%), Positives = 58/65 (89%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G E E+GKRLAQVVS+PSLTKSGVYWSWN SASFENQLSEEASD EKARKVWE+SEK Sbjct: 337 GYVSETESGKRLAQVVSDPSLTKSGVYWSWNNASASFENQLSEEASDVEKARKVWEISEK 396 Query: 92 LVGLA 78 LVGLA Sbjct: 397 LVGLA 401 Score = 56.6 bits (135), Expect(2) = 7e-36 Identities = 25/26 (96%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR LFPPFQKYITKGYVS Sbjct: 315 LFREHIPLFRALFPPFQKYITKGYVS 340
>PORA_WHEAT (Q41578) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 114 bits (285), Expect(2) = 1e-35 Identities = 56/65 (86%), Positives = 60/65 (92%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G E E+GKRLAQVV+EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEK Sbjct: 324 GFVSEAESGKRLAQVVAEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEK 383 Query: 92 LVGLA 78 LVGLA Sbjct: 384 LVGLA 388 Score = 53.1 bits (126), Expect(2) = 1e-35 Identities = 22/26 (84%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR LFPPFQK++TKG+VS Sbjct: 302 LFREHIPLFRTLFPPFQKFVTKGFVS 327
>POR_AVESA (P15904) Protochlorophyllide reductase (EC 1.3.1.33) (PCR)| (NADPH-protochlorophyllide oxidoreductase) (POR) (Fragment) Length = 313 Score = 114 bits (284), Expect(2) = 2e-35 Identities = 56/65 (86%), Positives = 59/65 (90%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G E E+GKRLAQVV EPSLTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEK Sbjct: 249 GFVSEAESGKRLAQVVGEPSLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEK 308 Query: 92 LVGLA 78 LVGLA Sbjct: 309 LVGLA 313 Score = 53.1 bits (126), Expect(2) = 2e-35 Identities = 22/26 (84%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR LFPPFQK++TKG+VS Sbjct: 227 LFREHIPLFRTLFPPFQKFVTKGFVS 252
>PORA_HORVU (P13653) Protochlorophyllide reductase A, chloroplast precursor (EC| 1.3.1.33) (PCR A) (NADPH-protochlorophyllide oxidoreductase A) (POR A) Length = 388 Score = 112 bits (279), Expect(2) = 7e-35 Identities = 55/65 (84%), Positives = 59/65 (90%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G E E+GKRLAQVV+EP LTKSGVYWSWNK+SASFENQLS+EASD EKARKVWELSEK Sbjct: 324 GFVSEAESGKRLAQVVAEPVLTKSGVYWSWNKDSASFENQLSQEASDPEKARKVWELSEK 383 Query: 92 LVGLA 78 LVGLA Sbjct: 384 LVGLA 388 Score = 53.1 bits (126), Expect(2) = 7e-35 Identities = 22/26 (84%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREHIPLFR LFPPFQK++TKG+VS Sbjct: 302 LFREHIPLFRTLFPPFQKFVTKGFVS 327
>POR_MARPA (O80333) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 458 Score = 102 bits (253), Expect(2) = 3e-31 Identities = 47/64 (73%), Positives = 57/64 (89%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G EEEAGKR+AQVVS+P L+KSGVYWSWNK+S SFEN+LSEEAS+ EKA+++WELSE+ Sbjct: 394 GYVSEEEAGKRMAQVVSDPKLSKSGVYWSWNKDSGSFENELSEEASNPEKAKRLWELSER 453 Query: 92 LVGL 81 L GL Sbjct: 454 LSGL 457 Score = 51.2 bits (121), Expect(2) = 3e-31 Identities = 22/26 (84%), Positives = 23/26 (88%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFR H+ LFR LFPPFQKYITKGYVS Sbjct: 372 LFRNHVTLFRTLFPPFQKYITKGYVS 397
>POR_CHLRE (Q39617) Protochlorophyllide reductase, chloroplast precursor (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) Length = 397 Score = 87.4 bits (215), Expect(2) = 4e-28 Identities = 38/65 (58%), Positives = 50/65 (76%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEK 93 G EEEAG+RLA V+S+P L KSG YWSW+ + SF+NQ+SEE +D KA K+W++S K Sbjct: 332 GYVSEEEAGRRLAAVISDPKLNKSGAYWSWSSTTGSFDNQVSEEVADDSKASKLWDISAK 391 Query: 92 LVGLA 78 LVGL+ Sbjct: 392 LVGLS 396 Score = 55.1 bits (131), Expect(2) = 4e-28 Identities = 23/26 (88%), Positives = 25/26 (96%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFREH+PLF+ LFPPFQKYITKGYVS Sbjct: 310 LFREHVPLFKTLFPPFQKYITKGYVS 335
>POR_PLEBO (O66148) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 71.2 bits (173), Expect(2) = 1e-17 Identities = 35/69 (50%), Positives = 47/69 (68%), Gaps = 4/69 (5%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSA----SFENQLSEEASDTEKARKVWE 105 G +E AG+R AQVV++P +SGV+WSW SF +LSE+ +D KA+++WE Sbjct: 254 GYVSQELAGERTAQVVADPEFKQSGVHWSWGNRQKEGRESFVQELSEKVTDDAKAKRMWE 313 Query: 104 LSEKLVGLA 78 LSEKLVGLA Sbjct: 314 LSEKLVGLA 322 Score = 35.8 bits (81), Expect(2) = 1e-17 Identities = 16/26 (61%), Positives = 20/26 (76%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFR +P+F+ +FP FQK IT GYVS Sbjct: 232 LFRNSLPVFQKVFPWFQKNITGGYVS 257
>POR_SYNY3 (Q59987) Light-dependent protochlorophyllide reductase (EC| 1.3.1.33) (PCR) (NADPH-protochlorophyllide oxidoreductase) (POR) (LPOR) Length = 322 Score = 65.9 bits (159), Expect(2) = 2e-17 Identities = 33/68 (48%), Positives = 48/68 (70%), Gaps = 4/68 (5%) Frame = -2 Query: 272 GTCPEEEAGKRLAQVVSEPSLTKSGVYWSW-NKNSA---SFENQLSEEASDTEKARKVWE 105 G +E AG+R+A VV++ SGV+WSW N+ A +F +LSE+ SD +KA+++W+ Sbjct: 254 GYVSQELAGERVAMVVADDKFKDSGVHWSWGNRQQAGREAFVQELSEQGSDAQKAQRMWD 313 Query: 104 LSEKLVGL 81 LSEKLVGL Sbjct: 314 LSEKLVGL 321 Score = 40.8 bits (94), Expect(2) = 2e-17 Identities = 18/26 (69%), Positives = 20/26 (76%) Frame = -1 Query: 339 LFREHIPLFRLLFPPFQKYITKGYVS 262 LFR H LFR +FP FQK +TKGYVS Sbjct: 232 LFRNHYSLFRTIFPWFQKNVTKGYVS 257
>RDH13_MOUSE (Q8CEE7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 334 Score = 30.8 bits (68), Expect = 0.87 Identities = 20/50 (40%), Positives = 26/50 (52%) Frame = -2 Query: 227 VSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVGLA 78 V+E SG Y+ + A S EA D E AR++W S +LVGLA Sbjct: 276 VAEELENVSGKYFDGLREKAP-----SPEAEDEEVARRLWTESARLVGLA 320
>WWOX_MOUSE (Q91WL8) WW domain-containing oxidoreductase (EC 1.1.1.-)| Length = 414 Score = 30.8 bits (68), Expect = 0.87 Identities = 13/21 (61%), Positives = 16/21 (76%) Frame = -2 Query: 149 SEEASDTEKARKVWELSEKLV 87 SEEA E AR +WELSE+L+ Sbjct: 385 SEEAQSEETARALWELSERLI 405
>RDH13_HUMAN (Q8NBN7) Retinol dehydrogenase 13 (EC 1.1.1.-)| Length = 331 Score = 30.8 bits (68), Expect = 0.87 Identities = 22/61 (36%), Positives = 28/61 (45%) Frame = -2 Query: 263 PEEEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWELSEKLVG 84 PE A V+E SG Y+ K A + EA D E AR++W S +LVG Sbjct: 264 PELAAQPSTYLAVAEELADVSGKYFDGLKQKAP-----APEAEDEEVARRLWAESARLVG 318 Query: 83 L 81 L Sbjct: 319 L 319
>RDH14_HUMAN (Q9HBH5) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 336 Score = 30.8 bits (68), Expect = 0.87 Identities = 13/27 (48%), Positives = 19/27 (70%) Frame = -2 Query: 161 ENQLSEEASDTEKARKVWELSEKLVGL 81 E +L +A D ARK+W++SE +VGL Sbjct: 308 EEELLPKAMDESVARKLWDISEVMVGL 334
>RDH14_MOUSE (Q9ERI6) Retinol dehydrogenase 14 (EC 1.1.1.-) (Alcohol| dehydrogenase PAN2) Length = 334 Score = 30.0 bits (66), Expect = 1.5 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = -2 Query: 161 ENQLSEEASDTEKARKVWELSEKLVGL 81 E +L +A D ARK+W++SE +VG+ Sbjct: 306 EEELLPKAMDESVARKLWDISEVMVGI 332
>YLJ2_CAEEL (P34367) Hypothetical protein C50C3.2 in chromosome III| Length = 2107 Score = 29.6 bits (65), Expect = 1.9 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -2 Query: 257 EEAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEASDTEKARKVWE 105 +E+GK + + + S+ WN+ SA+F+ L A+DT KV E Sbjct: 119 DESGKEIFDEIRKCSMV-------WNEISATFQQMLDPTATDTSNYEKVHE 162
>TRMU_LACAC (Q5FKU0) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/43 (27%), Positives = 23/43 (53%) Frame = +1 Query: 31 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 159 +SG +PE + VG+HA +++ + L + S++ WF Sbjct: 218 KSGKMVTPEGKVVGEHAGLMYYTIGQRQGLGLGSTKESTDPWF 260
>CN094_HUMAN (Q9H6D7) Protein C14orf94| Length = 363 Score = 28.9 bits (63), Expect = 3.3 Identities = 13/22 (59%), Positives = 17/22 (77%) Frame = -2 Query: 149 SEEASDTEKARKVWELSEKLVG 84 S+ S+T KA KVW+L+E LVG Sbjct: 187 SDADSETVKAAKVWKLAEVLVG 208
>TRMU_LACJO (Q74JW9) Probable tRNA| (5-methylaminomethyl-2-thiouridylate)-methyltransferase (EC 2.1.1.61) Length = 375 Score = 28.5 bits (62), Expect = 4.3 Identities = 11/43 (25%), Positives = 24/43 (55%) Frame = +1 Query: 31 RSGFETSPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 159 +SG +P+ + VG+HA +++ ++ L + S++ WF Sbjct: 218 QSGKMVTPDGKVVGEHAGLMYYTIGQRSGLGLGSTKESTDPWF 260
>CEF1_CANGA (Q6FUG1) Pre-mRNA-splicing factor CEF1| Length = 541 Score = 28.1 bits (61), Expect = 5.7 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = -2 Query: 254 EAGKRLAQVVSEPSLTKSGVYWSWNKNSASFENQLSEEA 138 E KR+AQ+ L ++G+ S K+ +EN++ A Sbjct: 184 EESKRIAQIQKRRELKQAGINTSLKKSKKKYENEIDYNA 222
>KPB1_RAT (Q64649) Phosphorylase b kinase alpha regulatory chain, skeletal| muscle isoform (Phosphorylase kinase alpha M subunit) Length = 1242 Score = 27.3 bits (59), Expect = 9.7 Identities = 15/37 (40%), Positives = 22/37 (59%) Frame = +1 Query: 49 SPESRPVGDHASPTSFSLSSQTFLAFSVSLASSESWF 159 SPES+ G H P+S L S TFL+ + +++S F Sbjct: 1022 SPESQTSGGH--PSSIDLMSPTFLSPAACISASSGSF 1056
>YJU7_YEAST (P39526) Hypothetical 229.9 kDa protein in NUC1-NCE1 intergenic| region Length = 2014 Score = 27.3 bits (59), Expect = 9.7 Identities = 11/29 (37%), Positives = 19/29 (65%) Frame = +1 Query: 82 SPTSFSLSSQTFLAFSVSLASSESWFSKD 168 SPT SL +TF+AF ++++ ++ F D Sbjct: 1732 SPTDISLLKKTFIAFESNISNFDNMFKVD 1760
>PAP_CITUN (Q9ZWQ8) Plastid-lipid associated protein, chloroplast precursor| (CitPAP) Length = 323 Score = 27.3 bits (59), Expect = 9.7 Identities = 13/30 (43%), Positives = 21/30 (70%) Frame = +1 Query: 67 VGDHASPTSFSLSSQTFLAFSVSLASSESW 156 V D AS + ++SSQ L FS+S ++++SW Sbjct: 261 VQDTASSVAKTISSQPPLKFSISNSNAQSW 290 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 33,663,262 Number of Sequences: 219361 Number of extensions: 459077 Number of successful extensions: 2062 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 1994 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2055 length of database: 80,573,946 effective HSP length: 88 effective length of database: 61,270,178 effective search space used: 1470484272 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
