| Clone Name | rbags5e16 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT017479.1| Zea mays clone EL01N0408G09.c mRNA sequence Length = 1166 Score = 391 bits (197), Expect = e-105 Identities = 324/367 (88%) Strand = Plus / Minus Query: 255 ttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactattccg 314 |||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| | || Sbjct: 780 ttgtgtgggaggatgttgtcgggaaggatgagctggggcgggatctcgcggaccacccca 721 Query: 315 agcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcgagc 374 ||||| ||||||||||||||||||||||| || |||||||||||| | ||||||||||| Sbjct: 720 agcatcgagtcgtactcctcgtctttgtgcgcgtacttcttcctcagcatcttctcgagc 661 Query: 375 tcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatgtag 434 |||||||||||||||||||||| ||||| | ||||| || || |||| |||||| ||| Sbjct: 660 tcaatctcgtcgaagctcttggcgttctcggctgcatggacctgggctaggttgatatag 601 Query: 435 ttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaacttg 494 |||| ||| ||||| |||||||| | |||||||| ||||| |||||||||||||||||| Sbjct: 600 ttggttgctgattgagcgatgaacgcaatctcctcttctgtaagcttccttaggaacttg 541 Query: 495 gcaggattaccaacccagacctccccagaaggaatcctcgtattctgcttgacaagagat 554 ||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct: 540 gcaggattaccgacccagacctctccagaaggaatccttgtattctgcttaacaagagat 481 Query: 555 ccancgccaaccatgctgtgcttttcaacaaccacaccatcaancaaagtggcacccata 614 || | ||||||||||||||||||||||| ||||| ||||||| || ||||||||||||| Sbjct: 480 cctgcaccaaccatgctgtgcttttcaaccaccactccatcaagcagagtggcacccata 421 Query: 615 ccaacaa 621 ||||||| Sbjct: 420 ccaacaa 414 Score = 44.1 bits (22), Expect = 0.54 Identities = 51/59 (86%), Gaps = 5/59 (8%) Strand = Plus / Minus Query: 93 cgatcctacaacagcgctcgacccaaaatcttattggg---catgaaaaaacagagaac 148 |||||||| ||||| ||||||||| |||||||||||| ||| |||||||||||||| Sbjct: 925 cgatcctaaaacagtgctcgaccc--aatcttattgggcttcataaaaaaacagagaac 869
>gb|AY107290.1| Zea mays PCO063868 mRNA sequence Length = 1381 Score = 391 bits (197), Expect = e-105 Identities = 324/367 (88%) Strand = Plus / Minus Query: 255 ttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactattccg 314 |||| |||||||||||||||||| ||||||||||| ||||||||||| ||||| | || Sbjct: 968 ttgtgtgggaggatgttgtcgggaaggatgagctggggcgggatctcgcggaccacccca 909 Query: 315 agcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcgagc 374 ||||| ||||||||||||||||||||||| || |||||||||||| | ||||||||||| Sbjct: 908 agcatcgagtcgtactcctcgtctttgtgcgcgtacttcttcctcagcatcttctcgagc 849 Query: 375 tcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatgtag 434 |||||||||||||||||||||| ||||| | ||||| || || |||| |||||| ||| Sbjct: 848 tcaatctcgtcgaagctcttggcgttctcggctgcatggacctgggctaggttgatatag 789 Query: 435 ttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaacttg 494 |||| ||| ||||| |||||||| | |||||||| ||||| |||||||||||||||||| Sbjct: 788 ttggttgctgattgagcgatgaacgcaatctcctcttctgtaagcttccttaggaacttg 729 Query: 495 gcaggattaccaacccagacctccccagaaggaatcctcgtattctgcttgacaagagat 554 ||||||||||| ||||||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct: 728 gcaggattaccgacccagacctctccagaaggaatccttgtattctgcttaacaagagat 669 Query: 555 ccancgccaaccatgctgtgcttttcaacaaccacaccatcaancaaagtggcacccata 614 || | ||||||||||||||||||||||| ||||| ||||||| || ||||||||||||| Sbjct: 668 cctgcaccaaccatgctgtgcttttcaactaccactccatcaagcagagtggcacccata 609 Query: 615 ccaacaa 621 ||||||| Sbjct: 608 ccaacaa 602 Score = 48.1 bits (24), Expect = 0.035 Identities = 39/43 (90%), Gaps = 2/43 (4%) Strand = Plus / Minus Query: 89 cggtcgatcctacaacagcgctcgacccaaaatcttattgggc 131 |||||||||||| ||||| ||||||||| ||||||||||||| Sbjct: 1118 cggtcgatcctaaaacagtgctcgaccc--aatcttattgggc 1078
>dbj|AK103904.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033150M03, full insert sequence Length = 1238 Score = 341 bits (172), Expect = 2e-90 Identities = 320/370 (86%) Strand = Plus / Minus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| | Sbjct: 972 gccttgtttgggaggatgttgtccgggaggatgagctccggcgggatctcacggaccacg 913 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || || ||||||||||||||||| ||| |||| ||||||| | |||||||| Sbjct: 912 ccgagcatcgaatcatactcctcgtctttgtgggcatactttttcctcagcatcttctcg 853 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||| |||||||||||| ||||||||||||| | ||||| ||||| || | |||||| Sbjct: 852 agctcgatctcgtcgaaggtcttggaattctcggcagcatggacttgggccagattgatg 793 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 792 tagttcgttgctgactgagcaatgaacgctatctcctcttcagtaagctttcttaggaac 733 Query: 492 ttggcaggattaccaacccagacctccccagaaggaatcctcgtattctgcttgacaaga 551 |||||||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 732 ttggcaggattaccgacccagacctctccagaaggaatccttgtgttctgcttaacaagc 673 Query: 552 gatccancgccaaccatgctgtgcttttcaacaaccacaccatcaancaaagtggcaccc 611 ||||| | ||||||||||||||||||||||| ||||| ||||||| || |||||||||| Sbjct: 672 gatcctgcaccaaccatgctgtgcttttcaacgaccactccatcaagcagagtggcaccc 613 Query: 612 ataccaacaa 621 |||||||||| Sbjct: 612 ataccaacaa 603 Score = 83.8 bits (42), Expect = 6e-13 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 54 ctcttcattgcaatgtgaaagagagatactgtatacggtcgatcctacaacagcgctcga 113 |||||||||| |||| |||||||| ||||||||| ||||||||||| |||| |||||| Sbjct: 1178 ctcttcattgtaatgc-aaagagaggtactgtatatggtcgatcctaaaacaatgctcga 1120 Query: 114 cccaaaatcttattgggcatgaaaaa 139 |||||| ||||||||||| ||||||| Sbjct: 1119 cccaaattcttattgggcttgaaaaa 1094
>dbj|AK058974.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-020-D04, full insert sequence Length = 1195 Score = 333 bits (168), Expect = 4e-88 Identities = 319/370 (86%) Strand = Plus / Minus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| | Sbjct: 974 gccttgtttgggaggatgttgtccgggaggatgagctccggcgggatctcacggaccacg 915 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || || ||||||||||||||||| ||| |||| ||||||| | |||||||| Sbjct: 914 ccgagcatcgaatcatactcctcgtctttgtgggcatactttttcctcagcatcttctcg 855 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||| |||||||||||| ||||||||||||| | ||||| ||||| || | |||||| Sbjct: 854 agctcgatctcgtcgaaggtcttggaattctcggcagcatggacttgggccagattgatg 795 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 794 tagttcgttgctgactgagcaatgaacgctatctcctcttcagtaagctttcttaggaac 735 Query: 492 ttggcaggattaccaacccagacctccccagaaggaatcctcgtattctgcttgacaaga 551 ||||||||| |||| ||||||||||| |||||||||||||| || |||||||| ||||| Sbjct: 734 ttggcaggactaccgacccagacctctccagaaggaatccttgtgttctgcttaacaagc 675 Query: 552 gatccancgccaaccatgctgtgcttttcaacaaccacaccatcaancaaagtggcaccc 611 ||||| | ||||||||||||||||||||||| ||||| ||||||| || |||||||||| Sbjct: 674 gatcctgcaccaaccatgctgtgcttttcaacgaccactccatcaagcagagtggcaccc 615 Query: 612 ataccaacaa 621 |||||||||| Sbjct: 614 ataccaacaa 605 Score = 83.8 bits (42), Expect = 6e-13 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 54 ctcttcattgcaatgtgaaagagagatactgtatacggtcgatcctacaacagcgctcga 113 |||||||||| |||| |||||||| ||||||||| ||||||||||| |||| |||||| Sbjct: 1180 ctcttcattgtaatgc-aaagagaggtactgtatatggtcgatcctaaaacaatgctcga 1122 Query: 114 cccaaaatcttattgggcatgaaaaa 139 |||||| ||||||||||| ||||||| Sbjct: 1121 cccaaattcttattgggcttgaaaaa 1096
>ref|XM_479312.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1155 Score = 317 bits (160), Expect = 2e-83 Identities = 317/370 (85%) Strand = Plus / Minus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||| |||| |||||||| |||| || |||||||||||||| | Sbjct: 882 gccttgtttgggaggatactgtccgggaggataagctctggtgggatctcacggaccacg 823 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || |||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct: 822 ccgagcatcgaatcgtactcctcgtctttgtgcgcaaacttcttcctcagcatcttctcg 763 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||||||||| |||||| |||||| |||||| | || || |||||||| || ||||| Sbjct: 762 agctcaatctcatcgaaggtcttggcattctcggctgcgtggacttgagccaaattgata 703 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 702 tagtttgttgctgactgtgcaatgaacgccatctcctcttcagtaagctttcttaggaac 643 Query: 492 ttggcaggattaccaacccagacctccccagaaggaatcctcgtattctgcttgacaaga 551 |||||||||||||||||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 642 ttggcaggattaccaacccagacctctccagaaggaatcctggtgttttgctttacaagg 583 Query: 552 gatccancgccaaccatgctgtgcttttcaacaaccacaccatcaancaaagtggcaccc 611 ||||| | ||||||||||||||||||||||| ||||| ||||||| || |||||||||| Sbjct: 582 gatcctgcaccaaccatgctgtgcttttcaaccaccactccatcaagcagagtggcaccc 523 Query: 612 ataccaacaa 621 |||||||||| Sbjct: 522 ataccaacaa 513
>dbj|AK060158.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-310-G03, full insert sequence Length = 1155 Score = 317 bits (160), Expect = 2e-83 Identities = 317/370 (85%) Strand = Plus / Minus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||| |||| |||||||| |||| || |||||||||||||| | Sbjct: 882 gccttgtttgggaggatactgtccgggaggataagctctggtgggatctcacggaccacg 823 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || |||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct: 822 ccgagcatcgaatcgtactcctcgtctttgtgcgcaaacttcttcctcagcatcttctcg 763 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||||||||| |||||| |||||| |||||| | || || |||||||| || ||||| Sbjct: 762 agctcaatctcatcgaaggtcttggcattctcggctgcgtggacttgagccaaattgata 703 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 702 tagtttgttgctgactgtgcaatgaacgccatctcctcttcagtaagctttcttaggaac 643 Query: 492 ttggcaggattaccaacccagacctccccagaaggaatcctcgtattctgcttgacaaga 551 |||||||||||||||||||||||||| |||||||||||||| || || ||||| ||||| Sbjct: 642 ttggcaggattaccaacccagacctctccagaaggaatcctggtgttttgctttacaagg 583 Query: 552 gatccancgccaaccatgctgtgcttttcaacaaccacaccatcaancaaagtggcaccc 611 ||||| | ||||||||||||||||||||||| ||||| ||||||| || |||||||||| Sbjct: 582 gatcctgcaccaaccatgctgtgcttttcaaccaccactccatcaagcagagtggcaccc 523 Query: 612 ataccaacaa 621 |||||||||| Sbjct: 522 ataccaacaa 513
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 224 bits (113), Expect = 3e-55 Identities = 227/265 (85%) Strand = Plus / Minus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| | Sbjct: 3551380 gccttgtttgggaggatgttgtccgggaggatgagctccggcgggatctcacggaccacg 3551321 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || || ||||||||||||||||| ||| |||| ||||||| | |||||||| Sbjct: 3551320 ccgagcatcgaatcatactcctcgtctttgtgggcatactttttcctcagcatcttctcg 3551261 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||| |||||||||||| ||||||||||||| | ||||| ||||| || | |||||| Sbjct: 3551260 agctcgatctcgtcgaaggtcttggaattctcggcagcatggacttgggccagattgatg 3551201 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 3551200 tagttcgttgctgactgagcaatgaacgctatctcctcttcagtaagctttcttaggaac 3551141 Query: 492 ttggcaggattaccaacccagacct 516 |||||||||||||| |||||||||| Sbjct: 3551140 ttggcaggattaccgacccagacct 3551116 Score = 125 bits (63), Expect = 2e-25 Identities = 97/109 (88%) Strand = Plus / Minus Query: 513 acctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaaccatgctg 572 ||||| |||||||||||||| || |||||||| ||||| ||||| | |||||||||||| Sbjct: 3550621 acctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaaccatgctg 3550562 Query: 573 tgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 ||||||||||| ||||| ||||||| || |||||||||||||||||||| Sbjct: 3550561 tgcttttcaacgaccactccatcaagcagagtggcacccataccaacaa 3550513 Score = 83.8 bits (42), Expect = 6e-13 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 54 ctcttcattgcaatgtgaaagagagatactgtatacggtcgatcctacaacagcgctcga 113 |||||||||| |||| |||||||| ||||||||| ||||||||||| |||| |||||| Sbjct: 3551586 ctcttcattgtaatgc-aaagagaggtactgtatatggtcgatcctaaaacaatgctcga 3551528 Query: 114 cccaaaatcttattgggcatgaaaaa 139 |||||| ||||||||||| ||||||| Sbjct: 3551527 cccaaattcttattgggcttgaaaaa 3551502
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 224 bits (113), Expect = 3e-55 Identities = 227/265 (85%) Strand = Plus / Minus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| | Sbjct: 3551325 gccttgtttgggaggatgttgtccgggaggatgagctccggcgggatctcacggaccacg 3551266 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || || ||||||||||||||||| ||| |||| ||||||| | |||||||| Sbjct: 3551265 ccgagcatcgaatcatactcctcgtctttgtgggcatactttttcctcagcatcttctcg 3551206 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||| |||||||||||| ||||||||||||| | ||||| ||||| || | |||||| Sbjct: 3551205 agctcgatctcgtcgaaggtcttggaattctcggcagcatggacttgggccagattgatg 3551146 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 3551145 tagttcgttgctgactgagcaatgaacgctatctcctcttcagtaagctttcttaggaac 3551086 Query: 492 ttggcaggattaccaacccagacct 516 |||||||||||||| |||||||||| Sbjct: 3551085 ttggcaggattaccgacccagacct 3551061 Score = 125 bits (63), Expect = 2e-25 Identities = 97/109 (88%) Strand = Plus / Minus Query: 513 acctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaaccatgctg 572 ||||| |||||||||||||| || |||||||| ||||| ||||| | |||||||||||| Sbjct: 3550566 acctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaaccatgctg 3550507 Query: 573 tgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 ||||||||||| ||||| ||||||| || |||||||||||||||||||| Sbjct: 3550506 tgcttttcaacgaccactccatcaagcagagtggcacccataccaacaa 3550458 Score = 83.8 bits (42), Expect = 6e-13 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 54 ctcttcattgcaatgtgaaagagagatactgtatacggtcgatcctacaacagcgctcga 113 |||||||||| |||| |||||||| ||||||||| ||||||||||| |||| |||||| Sbjct: 3551531 ctcttcattgtaatgc-aaagagaggtactgtatatggtcgatcctaaaacaatgctcga 3551473 Query: 114 cccaaaatcttattgggcatgaaaaa 139 |||||| ||||||||||| ||||||| Sbjct: 3551472 cccaaattcttattgggcttgaaaaa 3551447
>emb|AL954825.3|CNS08CD1 Oryza sativa chromosome 12, . BAC OJ2007_H06 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 103647 Score = 224 bits (113), Expect = 3e-55 Identities = 227/265 (85%) Strand = Plus / Minus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||| | Sbjct: 66308 gccttgtttgggaggatgttgtccgggaggatgagctccggcgggatctcacggaccacg 66249 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || || ||||||||||||||||| ||| |||| ||||||| | |||||||| Sbjct: 66248 ccgagcatcgaatcatactcctcgtctttgtgggcatactttttcctcagcatcttctcg 66189 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||| |||||||||||| ||||||||||||| | ||||| ||||| || | |||||| Sbjct: 66188 agctcgatctcgtcgaaggtcttggaattctcggcagcatggacttgggccagattgatg 66129 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 66128 tagttcgttgctgactgagcaatgaacgctatctcctcttcagtaagctttcttaggaac 66069 Query: 492 ttggcaggattaccaacccagacct 516 |||||||||||||| |||||||||| Sbjct: 66068 ttggcaggattaccgacccagacct 66044 Score = 125 bits (63), Expect = 2e-25 Identities = 97/109 (88%) Strand = Plus / Minus Query: 513 acctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaaccatgctg 572 ||||| |||||||||||||| || |||||||| ||||| ||||| | |||||||||||| Sbjct: 65549 acctctccagaaggaatccttgtgttctgcttaacaagcgatcctgcaccaaccatgctg 65490 Query: 573 tgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 ||||||||||| ||||| ||||||| || |||||||||||||||||||| Sbjct: 65489 tgcttttcaacgaccactccatcaagcagagtggcacccataccaacaa 65441 Score = 83.8 bits (42), Expect = 6e-13 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand = Plus / Minus Query: 54 ctcttcattgcaatgtgaaagagagatactgtatacggtcgatcctacaacagcgctcga 113 |||||||||| |||| |||||||| ||||||||| ||||||||||| |||| |||||| Sbjct: 66514 ctcttcattgtaatgc-aaagagaggtactgtatatggtcgatcctaaaacaatgctcga 66456 Query: 114 cccaaaatcttattgggcatgaaaaa 139 |||||| ||||||||||| ||||||| Sbjct: 66455 cccaaattcttattgggcttgaaaaa 66430
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 208 bits (105), Expect = 2e-50 Identities = 225/265 (84%) Strand = Plus / Plus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||| |||| |||||||| |||| || |||||||||||||| | Sbjct: 26722103 gccttgtttgggaggatactgtccgggaggataagctctggtgggatctcacggaccacg 26722162 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || |||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct: 26722163 ccgagcatcgaatcgtactcctcgtctttgtgcgcaaacttcttcctcagcatcttctcg 26722222 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||||||||| |||||| |||||| |||||| | || || |||||||| || ||||| Sbjct: 26722223 agctcaatctcatcgaaggtcttggcattctcggctgcgtggacttgagccaaattgata 26722282 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 26722283 tagtttgttgctgactgtgcaatgaacgccatctcctcttcagtaagctttcttaggaac 26722342 Query: 492 ttggcaggattaccaacccagacct 516 ||||||||||||||||||||||||| Sbjct: 26722343 ttggcaggattaccaacccagacct 26722367 Score = 117 bits (59), Expect = 5e-23 Identities = 96/109 (88%) Strand = Plus / Plus Query: 513 acctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaaccatgctg 572 ||||| |||||||||||||| || || ||||| ||||| ||||| | |||||||||||| Sbjct: 26722829 acctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaaccatgctg 26722888 Query: 573 tgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 ||||||||||| ||||| ||||||| || |||||||||||||||||||| Sbjct: 26722889 tgcttttcaaccaccactccatcaagcagagtggcacccataccaacaa 26722937
>dbj|AP003765.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1003_C06 Length = 143168 Score = 208 bits (105), Expect = 2e-50 Identities = 225/265 (84%) Strand = Plus / Plus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||| |||| |||||||| |||| || |||||||||||||| | Sbjct: 68960 gccttgtttgggaggatactgtccgggaggataagctctggtgggatctcacggaccacg 69019 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || |||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct: 69020 ccgagcatcgaatcgtactcctcgtctttgtgcgcaaacttcttcctcagcatcttctcg 69079 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||||||||| |||||| |||||| |||||| | || || |||||||| || ||||| Sbjct: 69080 agctcaatctcatcgaaggtcttggcattctcggctgcgtggacttgagccaaattgata 69139 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 69140 tagtttgttgctgactgtgcaatgaacgccatctcctcttcagtaagctttcttaggaac 69199 Query: 492 ttggcaggattaccaacccagacct 516 ||||||||||||||||||||||||| Sbjct: 69200 ttggcaggattaccaacccagacct 69224 Score = 117 bits (59), Expect = 5e-23 Identities = 96/109 (88%) Strand = Plus / Plus Query: 513 acctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaaccatgctg 572 ||||| |||||||||||||| || || ||||| ||||| ||||| | |||||||||||| Sbjct: 69686 acctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaaccatgctg 69745 Query: 573 tgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 ||||||||||| ||||| ||||||| || |||||||||||||||||||| Sbjct: 69746 tgcttttcaaccaccactccatcaagcagagtggcacccataccaacaa 69794
>dbj|AP004671.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0524G08 Length = 146690 Score = 208 bits (105), Expect = 2e-50 Identities = 225/265 (84%) Strand = Plus / Plus Query: 252 gccttgtctgggaggatgttgtcggggaggatgagctgcggcgggatctcacggactatt 311 ||||||| ||||||||| |||| |||||||| |||| || |||||||||||||| | Sbjct: 139707 gccttgtttgggaggatactgtccgggaggataagctctggtgggatctcacggaccacg 139766 Query: 312 ccgagcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaacttcttctcg 371 |||||||| || |||||||||||||||||||| |||||||||||||||| | |||||||| Sbjct: 139767 ccgagcatcgaatcgtactcctcgtctttgtgcgcaaacttcttcctcagcatcttctcg 139826 Query: 372 agctcaatctcgtcgaagctcttggaattctcagtggcatgaacttgagctaagttgatg 431 ||||||||||| |||||| |||||| |||||| | || || |||||||| || ||||| Sbjct: 139827 agctcaatctcatcgaaggtcttggcattctcggctgcgtggacttgagccaaattgata 139886 Query: 432 tagttggctgccgattgggcgatgaatgtgatctcctcctctgtcagcttccttaggaac 491 ||||| | ||| || || || ||||| | |||||||| || || ||||| ||||||||| Sbjct: 139887 tagtttgttgctgactgtgcaatgaacgccatctcctcttcagtaagctttcttaggaac 139946 Query: 492 ttggcaggattaccaacccagacct 516 ||||||||||||||||||||||||| Sbjct: 139947 ttggcaggattaccaacccagacct 139971 Score = 117 bits (59), Expect = 5e-23 Identities = 96/109 (88%) Strand = Plus / Plus Query: 513 acctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaaccatgctg 572 ||||| |||||||||||||| || || ||||| ||||| ||||| | |||||||||||| Sbjct: 140433 acctctccagaaggaatcctggtgttttgctttacaagggatcctgcaccaaccatgctg 140492 Query: 573 tgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 ||||||||||| ||||| ||||||| || |||||||||||||||||||| Sbjct: 140493 tgcttttcaaccaccactccatcaagcagagtggcacccataccaacaa 140541
>gb|DQ284493.1| Solanum tuberosum clone 050G10 transcription factor APFI-like mRNA, complete cds Length = 1260 Score = 61.9 bits (31), Expect = 2e-06 Identities = 40/43 (93%) Strand = Plus / Minus Query: 508 cccagacctccccagaaggaatcctcgtattctgcttgacaag 550 |||||||||| ||| |||||||||||||||||||| ||||||| Sbjct: 545 cccagacctctccacaaggaatcctcgtattctgcctgacaag 503 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Minus Query: 315 agcatagagtcgtactcctcgtctttgtgagcaaacttcttcctcaac 362 |||||||| || ||||||||||||||| ||||||| ||||||| |||| Sbjct: 738 agcatagaatcatactcctcgtctttgcgagcaaatttcttccgcaac 691
>gb|AY105930.1| Zea mays PCO135569 mRNA sequence Length = 1279 Score = 50.1 bits (25), Expect = 0.009 Identities = 108/136 (79%) Strand = Plus / Minus Query: 460 tgatctcctcctctgtcagcttccttaggaacttggcaggattaccaacccagacctccc 519 ||||||| || ||||| |||||||| || || |||||||| || || |||| ||||| | Sbjct: 714 tgatctcgtcatctgtgagcttcctcagaaatttggcagggttccctccccatacctctc 655 Query: 520 cagaaggaatcctcgtattctgcttgacaagagatccancgccaaccatgctgtgctttt 579 || |||| ||||| ||||||||| || || | |||| | | ||||| | |||||||| Sbjct: 654 cacaagggatcctagtattctgccgtacgagggctccagcagccaccattccgtgctttt 595 Query: 580 caacaaccacaccatc 595 ||||||| |||||||| Sbjct: 594 caacaacaacaccatc 579
>ref|NM_101815.2| Arabidopsis thaliana unknown protein AT1G19580 mRNA, complete cds Length = 1357 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 actattccgagcatagagtcgtactcctcgtc 337 |||||||||||||| ||||| ||||||||||| Sbjct: 920 actattccgagcattgagtcatactcctcgtc 889
>gb|AC024609.2| Arabidopsis thaliana chromosome I BAC F14P1 genomic sequence, complete sequence Length = 90341 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Plus Query: 306 actattccgagcatagagtcgtactcctcgtc 337 |||||||||||||| ||||| ||||||||||| Sbjct: 85440 actattccgagcattgagtcatactcctcgtc 85471
>gb|AC025808.8|AC025808 Genomic sequence for Arabidopsis thaliana BAC F18O14 from chromosome I, complete sequence Length = 120977 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 actattccgagcatagagtcgtactcctcgtc 337 |||||||||||||| ||||| ||||||||||| Sbjct: 110206 actattccgagcattgagtcatactcctcgtc 110175
>gb|AY085025.1| Arabidopsis thaliana clone 12477 mRNA, complete sequence Length = 1337 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 actattccgagcatagagtcgtactcctcgtc 337 |||||||||||||| ||||| ||||||||||| Sbjct: 922 actattccgagcattgagtcatactcctcgtc 891
>dbj|AK176887.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-45-B01 Length = 1131 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 actattccgagcatagagtcgtactcctcgtc 337 |||||||||||||| ||||| ||||||||||| Sbjct: 806 actattccgagcattgagtcatactcctcgtc 775
>dbj|AK176844.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL25-40-H22 Length = 1293 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 actattccgagcatagagtcgtactcctcgtc 337 |||||||||||||| ||||| ||||||||||| Sbjct: 864 actattccgagcattgagtcatactcctcgtc 833
>dbj|AK175388.1| Arabidopsis thaliana mRNA, complete cds, clone: RAFL21-82-L07 Length = 1158 Score = 48.1 bits (24), Expect = 0.035 Identities = 30/32 (93%) Strand = Plus / Minus Query: 306 actattccgagcatagagtcgtactcctcgtc 337 |||||||||||||| ||||| ||||||||||| Sbjct: 833 actattccgagcattgagtcatactcctcgtc 802
>ref|XM_527863.1| PREDICTED: Pan troglodytes similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38) (LOC472488), mRNA Length = 1350 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcatac 26 |||||||||||||||||| ||||||| Sbjct: 187 ctgcttcaacaatgtgcaattcatac 162
>gb|AC146244.3| Pan troglodytes BAC clone RP43-27M14 from 7, complete sequence Length = 161963 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcatac 26 |||||||||||||||||| ||||||| Sbjct: 116972 ctgcttcaacaatgtgcaattcatac 116997
>ref|XM_641097.1| Dictyostelium discoideum hypothetical protein (DDB0190470), partial mRNA Length = 2271 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 348 aacttcttcctcaacttcttc 368 ||||||||||||||||||||| Sbjct: 1767 aacttcttcctcaacttcttc 1747
>gb|U80439.1| Caenorhabditis elegans cosmid C01G8, complete sequence Length = 38487 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 350 cttcttcctcaacttcttctc 370 ||||||||||||||||||||| Sbjct: 4774 cttcttcctcaacttcttctc 4794
>gb|AC148655.4| Medicago truncatula clone mth2-61c11, complete sequence Length = 89884 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 138 aaacagagaacaagaccaaaa 158 ||||||||||||||||||||| Sbjct: 83119 aaacagagaacaagaccaaaa 83139
>gb|CP000076.1| Pseudomonas fluorescens Pf-5, complete genome Length = 7074893 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 345 gcaaacttcttcctcaacttc 365 ||||||||||||||||||||| Sbjct: 4137427 gcaaacttcttcctcaacttc 4137407
>gb|AY118759.1| Drosophila melanogaster GH09073 full insert cDNA Length = 2271 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 catagagtcgtactcctcgtc 337 ||||||||||||||||||||| Sbjct: 1356 catagagtcgtactcctcgtc 1336
>ref|NM_135145.1| Drosophila melanogaster CG9144-RA (CG9144), mRNA Length = 2281 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 catagagtcgtactcctcgtc 337 ||||||||||||||||||||| Sbjct: 1384 catagagtcgtactcctcgtc 1364
>gb|AC067903.13| Homo sapiens, clone RP11-740O11, complete sequence Length = 198410 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 gaaaaaacagagaacaagaccaaaa 158 ||||||| ||||||||||||||||| Sbjct: 75414 gaaaaaaaagagaacaagaccaaaa 75438
>gb|AC022605.7| Homo sapiens, clone RP11-154E16, complete sequence Length = 168875 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 gaaaaaacagagaacaagaccaaaa 158 ||||||| ||||||||||||||||| Sbjct: 143728 gaaaaaaaagagaacaagaccaaaa 143752
>gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosome 9, complete sequence Length = 209633 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 562 caaccatgctgtgcttttcaa 582 ||||||||||||||||||||| Sbjct: 122407 caaccatgctgtgcttttcaa 122427
>gb|AC092216.1|AC092216 Drosophila melanogaster, chromosome 2L, region 25F-26A, BAC clone BACR10M11, complete sequence Length = 174832 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 catagagtcgtactcctcgtc 337 ||||||||||||||||||||| Sbjct: 85904 catagagtcgtactcctcgtc 85884
>ref|NM_059155.3| Caenorhabditis elegans human CLN (neuronal ceroid lipofuscinosis) related family member (cln-3.2) (cln-3.2) mRNA, complete cds Length = 1392 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 cttcttcctcaacttcttctc 370 ||||||||||||||||||||| Sbjct: 728 cttcttcctcaacttcttctc 708
>gb|AF326786.1| Caenorhabditis elegans CLN-3.2 (cln-3.2) mRNA, complete cds Length = 1419 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 350 cttcttcctcaacttcttctc 370 ||||||||||||||||||||| Sbjct: 750 cttcttcctcaacttcttctc 730
>gb|AE003612.2| Drosophila melanogaster chromosome 2L, section 21 of 83 of the complete sequence Length = 260673 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 317 catagagtcgtactcctcgtc 337 ||||||||||||||||||||| Sbjct: 108175 catagagtcgtactcctcgtc 108195
>gb|AC004758.1|AC004758 Drosophila melanogaster DNA sequence (P1s DS06106 (D123), DS05973 (D122), and DS08584 (D118)), complete sequence Length = 174311 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 317 catagagtcgtactcctcgtc 337 ||||||||||||||||||||| Sbjct: 25616 catagagtcgtactcctcgtc 25596
>dbj|AP004713.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1915B5, complete sequence Length = 145032 Score = 42.1 bits (21), Expect = 2.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 134 gaaaaaacagagaacaagaccaaaa 158 ||||||| ||||||||||||||||| Sbjct: 93042 gaaaaaaaagagaacaagaccaaaa 93066
>ref|NM_103620.2| Arabidopsis thaliana APFI AT1G47260 (APFI) mRNA, complete cds Length = 1750 Score = 40.1 bits (20), Expect = 8.5 Identities = 90/114 (78%) Strand = Plus / Minus Query: 508 cccagacctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaacca 567 |||| ||||| |||||||| || | ||| ||||| || |||||||| ||| | |||||| Sbjct: 681 cccacacctctccagaagggattcgcgtgttctgtttcacaagagaaccagcagcaacca 622 Query: 568 tgctgtgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 || || || ||||| ||||||||||||| | || || ||||||||||||| Sbjct: 621 tggcatgtttctcaaccaccacaccatcaagtagtgttgctcccataccaacaa 568
>ref|XM_511003.1| PREDICTED: Pan troglodytes LOC454132 (LOC454132), mRNA Length = 1180 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 284 ctgcttcaacaatgtgcaattcat 261
>ref|XM_523211.1| PREDICTED: Pan troglodytes similar to Nucleophosmin (NPM) (Nucleolar phosphoprotein B23) (Numatrin) (Nucleolar protein NO38) (LOC467816), mRNA Length = 1191 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 802 ctgcttcaacaatgtgcaattcat 779
>ref|XM_519045.1| PREDICTED: Pan troglodytes similar to nucleophosmin 1; nucleolar phosphoprotein B23; numatrin; nucleophosmin/nucleoplasmin family, member 1 (LOC463353), mRNA Length = 541 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 181 ctgcttcaacaatgtgcaattcat 158
>ref|XM_518096.1| PREDICTED: Pan troglodytes similar to nucleophosmin 1; nucleolar phosphoprotein B23; numatrin; nucleophosmin/nucleoplasmin family, member 1 (LOC462261), mRNA Length = 1131 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 448 ctgcttcaacaatgtgcaattcat 425
>ref|XM_516791.1| PREDICTED: Pan troglodytes similar to hypothetical protein (LOC460744), mRNA Length = 5298 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 3712 atgaacttgagctatgttgatgta 3689
>ref|XM_513241.1| PREDICTED: Pan troglodytes LOC456671 (LOC456671), mRNA Length = 790 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 301 ctgcttcaacaatgtgcaattcat 278
>ref|NM_019001.2| Homo sapiens 5'-3' exoribonuclease 1 (XRN1), mRNA Length = 10123 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 3674 atgaacttgagctatgttgatgta 3651
>gb|AC163737.3| Pan troglodytes BAC clone CH251-547O12 from chromosome 6, complete sequence Length = 207116 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 37632 ctgcttcaacaatgtgcaattcat 37609
>gb|AY596527.1| Saccharum officinarum clone SCCCLB1004G11, complete sequence Length = 1189 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 572 gtgcttttcaacaaccacaccatc 595 ||||||||||||||| |||||||| Sbjct: 567 gtgcttttcaacaacgacaccatc 590
>gb|AC147033.2| Pan troglodytes BAC clone RP43-99I5 from 7, complete sequence Length = 188305 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 28816 ctgcttcaacaatgtgcaattcat 28793
>gb|DQ491001.1| Chlorella virus MT325 ctg_71 genomic sequence Length = 314335 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 362 cttcttctcgagctcaatct 381 |||||||||||||||||||| Sbjct: 6417 cttcttctcgagctcaatct 6436
>gb|AF165146.6| Homo sapiens chromosome 8 clone CTA-397H3 map q12.1, complete sequence Length = 110554 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 72218 ctgcttcaacaatgtgcaattcat 72241
>gb|BC045572.1| Homo sapiens hypothetical protein LOC152024, mRNA (cDNA clone IMAGE:4827576) Length = 2963 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 2054 ctgcttcaacaatgtgcaattcat 2031
>ref|XM_850942.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 6 (LOC606906), mRNA Length = 1326 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 279 ctgcttcaacaatgtgcaattcat 256
>ref|XM_850904.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 5 (LOC606906), mRNA Length = 1249 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 279 ctgcttcaacaatgtgcaattcat 256
>ref|XM_850862.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 4 (LOC606906), mRNA Length = 1314 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 279 ctgcttcaacaatgtgcaattcat 256
>ref|XM_850817.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 3 (LOC606906), mRNA Length = 1328 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 279 ctgcttcaacaatgtgcaattcat 256
>ref|XM_843238.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 2 (LOC606906), mRNA Length = 1330 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 279 ctgcttcaacaatgtgcaattcat 256
>gb|AC005192.1| Homo sapiens BAC clone CTB-163K11 from 7, complete sequence Length = 128600 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 59284 ctgcttcaacaatgtgcagttcat 59261
>gb|AF254983.3| Homo sapiens chromosome 21 clone RP11-589M2 map p11-q21.1, complete sequence Length = 190711 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cttcttcctcaacttcttct 369 |||||||||||||||||||| Sbjct: 167786 cttcttcctcaacttcttct 167805
>ref|XM_857998.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 7 (LOC475722), mRNA Length = 1323 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 291 ctgcttcaacaatgtgcaattcat 268
>ref|XM_857972.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 6 (LOC475722), mRNA Length = 1030 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 291 ctgcttcaacaatgtgcaattcat 268
>ref|XM_857946.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 5 (LOC475722), mRNA Length = 1245 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 291 ctgcttcaacaatgtgcaattcat 268
>ref|XM_858045.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 9 (LOC475722), mRNA Length = 1323 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 291 ctgcttcaacaatgtgcaattcat 268
>ref|XM_858024.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 8 (LOC475722), mRNA Length = 1320 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 291 ctgcttcaacaatgtgcaattcat 268
>ref|XM_857920.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 4 (LOC475722), mRNA Length = 1279 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 286 ctgcttcaacaatgtgcaattcat 263
>ref|XM_857895.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 3 (LOC475722), mRNA Length = 1221 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 186 ctgcttcaacaatgtgcaattcat 163
>ref|XM_857874.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 2 (LOC475722), mRNA Length = 1213 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 286 ctgcttcaacaatgtgcaattcat 263
>ref|XM_532930.2| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 1 (LOC475722), mRNA Length = 1326 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 291 ctgcttcaacaatgtgcaattcat 268
>gb|AC122450.4| Mus musculus BAC clone RP24-249K4 from chromosome 1, complete sequence Length = 154695 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gaaaaaacagagaacaagac 153 |||||||||||||||||||| Sbjct: 72655 gaaaaaacagagaacaagac 72636
>gb|AC114008.5| Mus musculus BAC clone RP23-198A16 from chromosome 15, complete sequence Length = 202835 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 132 atgaaaaaacagagaacaagaccaaaacatac 163 ||||| || ||||||||||||||| ||||||| Sbjct: 1420 atgaacaaccagagaacaagaccataacatac 1389
>gb|AC106818.2| Homo sapiens chromosome 5 clone RP11-65F13, complete sequence Length = 180056 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 150907 ctgcttcaacaatgtgcagttcat 150930
>gb|AY137776.1| Homo sapiens DNA strand-exchange protein SEP1 mRNA, complete cds Length = 5121 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 3607 atgaacttgagctatgttgatgta 3584
>ref|XM_861701.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 13 (LOC479292), mRNA Length = 1451 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_861688.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 12 (LOC479292), mRNA Length = 1453 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_861675.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 11 (LOC479292), mRNA Length = 1295 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_861662.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 10 (LOC479292), mRNA Length = 1365 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_861646.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 9 (LOC479292), mRNA Length = 1340 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_861632.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 8 (LOC479292), mRNA Length = 1407 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_861619.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 7 (LOC479292), mRNA Length = 1285 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 261 ctgcttcaacaatgtgcaattcat 238
>ref|XM_861592.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 5 (LOC479292), mRNA Length = 1319 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_861579.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 4 (LOC479292), mRNA Length = 786 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 305 ctgcttcaacaatgtgcaattcat 282
>ref|XM_861554.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 2 (LOC479292), mRNA Length = 1249 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 225 ctgcttcaacaatgtgcaattcat 202
>ref|XM_536432.2| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 1 (LOC479292), mRNA Length = 1449 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 425 ctgcttcaacaatgtgcaattcat 402
>ref|XM_862211.1| PREDICTED: Canis familiaris similar to hect domain and RLD 2, transcript variant 2 (LOC479005), mRNA Length = 7234 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cttcctcaacttcttctcga 372 |||||||||||||||||||| Sbjct: 2440 cttcctcaacttcttctcga 2459
>ref|XM_536160.2| PREDICTED: Canis familiaris similar to hect domain and RLD 2, transcript variant 1 (LOC479005), mRNA Length = 15266 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 353 cttcctcaacttcttctcga 372 |||||||||||||||||||| Sbjct: 10472 cttcctcaacttcttctcga 10491
>ref|XM_855285.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 5 (LOC608196), mRNA Length = 1245 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 283 ctgcttcaacaatgtgcaattcat 260
>ref|XM_855251.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 4 (LOC608196), mRNA Length = 1283 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 282 ctgcttcaacaatgtgcaattcat 259
>ref|XM_855222.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 3 (LOC608196), mRNA Length = 1217 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 282 ctgcttcaacaatgtgcaattcat 259
>ref|XM_855182.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 2 (LOC608196), mRNA Length = 1198 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 282 ctgcttcaacaatgtgcaattcat 259
>ref|XM_844853.1| PREDICTED: Canis familiaris similar to nucleophosmin 1, transcript variant 1 (LOC608196), mRNA Length = 1327 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 284 ctgcttcaacaatgtgcaattcat 261
>gb|BC094859.1| Homo sapiens cDNA clone IMAGE:4336253, complete cds Length = 1001 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 175 ctgcttcaacaatgtgcagttcat 152
>emb|AL672311.26| Human DNA sequence from clone RP13-167H21 on chromosome X, complete sequence Length = 115998 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cttcttcctcaacttcttct 369 |||||||||||||||||||| Sbjct: 56948 cttcttcctcaacttcttct 56967
>emb|AL590640.19| Human DNA sequence from clone RP11-40H20 on chromosome 1 Contains the 5' end of the SLC9A1 gene for solute carrier family 9 (sodium/hydrogen exchanger), isoform 1 (antiporter, Na+/H+, amiloride sensitive), a ribosomal protein L18a (RPL18A) pseudogene, a novel pseudogene (FLJ20420), a nucleophosmin (nucleolar phosphoprotein B23, numatrin)(NPM1) pseudogene, a mall nuclear ribonucleoprotein polypeptide E (SNRPE) pseudogene, a novel gene, the 5' end of a novel gene (KIAA1037) and a CpG island, complete sequence Length = 147052 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 91389 ctgcttcaacaatgtgcaattcat 91412
>emb|AL359090.15| Human DNA sequence from clone RP11-69P2 on chromosome 1 Contains the 3' end of the CHIT1 gene for chitinase 1 (chitotriosidase), a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1) pseudogene and the 5' end of a novel gene, complete sequence Length = 54507 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 22126 ctgcttcaacaatgtgcaattcat 22103
>emb|AL158160.8| Human DNA sequence from clone RP11-165O3 on chromosome 10 Contains the gene for a novel protein and a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1)(B23,NPM,NUMATRIN) pseudogene, complete sequence Length = 113036 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 57549 ctgcttcaacaatgtgcaattcat 57526
>emb|AL035588.21|HS696P19 Human DNA sequence from clone RP4-696P19 on chromosome 6p12.3-21.2 Contains the 3' end of the TFEB gene for transcription factor EB (TCFEB), a nucleophosmin (nucleolar phosphoprotein B23, numatrin) (NPM1) pseudogene, the MDFI gene for MyoD family inhibitor, the 5' end of a novel gene and two CpG islands, complete sequence Length = 110665 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 64625 ctgcttcaacaatgtgcaattcat 64648
>emb|AL023803.3|HS616B8 Human DNA sequence from clone RP4-616B8 on chromosome 20q11.22-12 Contains the DDX35 gene for DEAD/H box polypeptide 35, the NPM1P19 gene for nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 19, the C20orf129 gene for chromosome 20 open reading frame 129, the 3' end of the PPP1R16B gene for protein phosphatase 1 regulatory (inhibitory) subunit 16B and four CpG islands, complete sequence Length = 155379 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 56634 ctgcttcaacaatgtgcaattcat 56657
>emb|BX034204.1|CNS08YK0 Single read from an extremity of a full-length cDNA clone made from Anopheles gambiae total adult females. 5-PRIME end of clone FK0AAA50AB01 of strain 6-9 of Anopheles gambiae (African malaria mosquito) Length = 770 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 357 ctcaacttcttctcgagctc 376 |||||||||||||||||||| Sbjct: 322 ctcaacttcttctcgagctc 303
>gb|AY113936.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds Length = 868 Score = 40.1 bits (20), Expect = 8.5 Identities = 90/114 (78%) Strand = Plus / Minus Query: 508 cccagacctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaacca 567 |||| ||||| |||||||| || | ||| ||||| || |||||||| ||| | |||||| Sbjct: 544 cccacacctctccagaagggattcgcgtgttctgtttcacaagagaaccagcagcaacca 485 Query: 568 tgctgtgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 || || || ||||| ||||||||||||| | || || ||||||||||||| Sbjct: 484 tggcatgtttctcaaccaccacaccatcaagtagtgttgctcccataccaacaa 431
>gb|AY045979.1| Arabidopsis thaliana unknown protein (At1g47260) mRNA, complete cds Length = 1182 Score = 40.1 bits (20), Expect = 8.5 Identities = 90/114 (78%) Strand = Plus / Minus Query: 508 cccagacctccccagaaggaatcctcgtattctgcttgacaagagatccancgccaacca 567 |||| ||||| |||||||| || | ||| ||||| || |||||||| ||| | |||||| Sbjct: 650 cccacacctctccagaagggattcgcgtgttctgtttcacaagagaaccagcagcaacca 591 Query: 568 tgctgtgcttttcaacaaccacaccatcaancaaagtggcacccataccaacaa 621 || || || ||||| ||||||||||||| | || || ||||||||||||| Sbjct: 590 tggcatgtttctcaaccaccacaccatcaagtagtgttgctcccataccaacaa 537
>emb|AL163201.2|HS21C001 Homo sapiens chromosome 21 segment HS21C001 Length = 281116 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cttcttcctcaacttcttct 369 |||||||||||||||||||| Sbjct: 215922 cttcttcctcaacttcttct 215941
>gb|AC164573.5| Mus musculus 10 BAC RP24-221D13 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163890 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 ttattgggcatgaaaaaaca 142 |||||||||||||||||||| Sbjct: 32239 ttattgggcatgaaaaaaca 32258
>emb|CR857959.1| Pongo pygmaeus mRNA; cDNA DKFZp469O2211 (from clone DKFZp469O2211) Length = 1366 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 283 ctgcttcaacaatgtgcaattcat 260
>gb|AC103874.2| Homo sapiens chromosome 15, clone RP11-907B8, complete sequence Length = 158897 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 48488 ctgcttcaacaatgtgcagttcat 48465
>emb|CR627396.1| Homo sapiens mRNA; cDNA DKFZp686F19113 (from clone DKFZp686F19113) Length = 5485 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 3677 atgaacttgagctatgttgatgta 3654
>ref|NM_001004420.1| Homo sapiens C-type lectin domain family 2, member D (CLEC2D), transcript variant 3, mRNA Length = 1814 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 1368 ctgcttcaacaatgtgcagttcat 1345
>ref|NM_001004419.1| Homo sapiens C-type lectin domain family 2, member D (CLEC2D), transcript variant 2, mRNA Length = 1821 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 1375 ctgcttcaacaatgtgcagttcat 1352
>ref|NM_013269.2| Homo sapiens C-type lectin domain family 2, member D (CLEC2D), transcript variant 1, mRNA Length = 1739 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 1293 ctgcttcaacaatgtgcagttcat 1270
>gb|AC098971.2| Homo sapiens chromosome 3 clone RP11-118N13, complete sequence Length = 175409 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 121849 ctgcttcaacaatgtgcaattcat 121872
>emb|CR749518.1| Homo sapiens mRNA; cDNA DKFZp686B22225 (from clone DKFZp686B22225) Length = 5399 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 3655 atgaacttgagctatgttgatgta 3632
>emb|CR620725.1| full-length cDNA clone CS0DI058YG23 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1260 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 266 ctgcttcaacaatgtgcagttcat 243
>gb|AC107376.7| Homo sapiens chromosome 8, clone CTA-397H3, complete sequence Length = 110554 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 72217 ctgcttcaacaatgtgcaattcat 72240
>emb|CR598820.1| full-length cDNA clone CS0DA011YL12 of Neuroblastoma of Homo sapiens (human) Length = 1230 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 270 ctgcttcaacaatgtgcagttcat 247
>emb|CR595483.1| full-length cDNA clone CS0CAP008YG08 of Thymus of Homo sapiens (human) Length = 1239 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 275 ctgcttcaacaatgtgcagttcat 252
>emb|CR592967.1| full-length cDNA clone CL0BB005ZA09 of Neuroblastoma of Homo sapiens (human) Length = 1266 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 270 ctgcttcaacaatgtgcagttcat 247
>gb|AC023508.16| Homo sapiens 3 BAC RP11-18O13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 136105 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 82088 atgaacttgagctatgttgatgta 82111
>emb|CR591076.1| full-length cDNA clone CS0DH005YF05 of T cells (Jurkat cell line) of Homo sapiens (human) Length = 1241 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 273 ctgcttcaacaatgtgcagttcat 250
>emb|CR590106.1| full-length cDNA clone CS0DI007YP06 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1231 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 266 ctgcttcaacaatgtgcagttcat 243
>gb|AC007068.17| Homo sapiens 12p BAC RPCI11-75L1 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 178607 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 167947 ctgcttcaacaatgtgcagttcat 167970
>gb|AC021037.6| Homo sapiens chromosome 10 clone RP11-44D15, complete sequence Length = 179918 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 89580 ctgcttcaacaatgtgcagttcat 89557
>gb|AC105015.3| Homo sapiens chromosome 8, clone RP11-589O3, complete sequence Length = 178520 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 176000 ctgcttcaacaatgtgcaattcat 175977
>gb|AC108102.2| Homo sapiens chromosome 5 clone RP11-185E12, complete sequence Length = 161056 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 99447 ctgcttcaacaatgtgcagttcat 99424
>ref|XM_944430.1| PREDICTED: Homo sapiens hypothetical protein LOC152024 (LOC152024), mRNA Length = 2955 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 2063 ctgcttcaacaatgtgcaattcat 2040
>ref|XM_379183.2| PREDICTED: Homo sapiens hypothetical protein LOC152024 (LOC152024), mRNA Length = 2955 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 2063 ctgcttcaacaatgtgcaattcat 2040
>gb|AC010746.8| Homo sapiens BAC clone RP11-550E21 from 2, complete sequence Length = 229379 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 116323 ctgcttcaacaatgtgcagttcat 116346
>ref|NG_001232.1| Homo sapiens nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 18 (NPM1P18) on chromosome 7 Length = 1185 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 292 ctgcttcaacaatgtgcaattcat 269
>gb|AC023866.8| Homo sapiens chromosome 8, clone RP11-787D18, complete sequence Length = 180486 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 52922 ctgcttcaacaatgtgcaattcat 52899
>gb|AC018347.17| Homo sapiens chromosome 15 clone RP11-410F2, complete sequence Length = 149399 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 70483 ctgcttcaacaatgtgcagttcat 70460
>ref|XM_940106.1| PREDICTED: Homo sapiens similar to nucleophosmin 1 isoform 2 (LOC440577), mRNA Length = 1190 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 280 ctgcttcaacaatgtgcaattcat 257
>ref|XM_496355.2| PREDICTED: Homo sapiens similar to nucleophosmin 1 isoform 2 (LOC440577), mRNA Length = 1190 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 280 ctgcttcaacaatgtgcaattcat 257
>gb|BC063128.1| Homo sapiens C-type lectin superfamily 2, member D, mRNA (cDNA clone IMAGE:6701284) Length = 2323 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 1476 ctgcttcaacaatgtgcagttcat 1453
>ref|NG_001167.1| Homo sapiens nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 7 (NPM1P7) on chromosome 12 Length = 1493 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 373 ctgcttcaacaatgtgcagttcat 350
>ref|NG_001231.1| Homo sapiens nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 19 (NPM1P19) on chromosome 20 Length = 1107 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 290 ctgcttcaacaatgtgcaattcat 267
>ref|NG_001233.1| Homo sapiens nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 17 (NPM1P17) on chromosome 3 Length = 914 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 474 ctgcttcaacaatgtgcaattcat 451
>ref|NG_000885.1| Homo sapiens nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 14 (NPM1P14) on chromosome 7 Length = 1794 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 379 ctgcttcaacaatgtgcagttcat 356
>ref|NG_001166.1| Homo sapiens nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 6 (NPM1P6) on chromosome 8 Length = 865 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 177 ctgcttcaacaatgtgcaattcat 154
>gb|AC153507.11| Mus musculus 10 BAC RP23-411J14 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 190405 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 ttattgggcatgaaaaaaca 142 |||||||||||||||||||| Sbjct: 13349 ttattgggcatgaaaaaaca 13330
>gb|AC125238.5| Homo sapiens BAC clone RP11-711C24 from 2, complete sequence Length = 196622 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 165693 ctgcttcaacaatgtgcaattcat 165716
>gb|AC116957.2| Dictyostelium discoideum chromosome 2 map 1685067-2090751 strain AX4, complete sequence Length = 405682 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 578 ttcaacaaccacaccatcaa 597 |||||||||||||||||||| Sbjct: 213132 ttcaacaaccacaccatcaa 213151
>gb|AC010138.6| Homo sapiens BAC clone RP11-175H4 from 2, complete sequence Length = 160970 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 3791 ctgcttcaacaatgtgcaattcat 3814
>gb|AC007349.1|AC007349 Homo sapiens clone RP11-85E16 from 7p14-15, complete sequence Length = 175212 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 88948 ctgcttcaacaatgtgcaattcat 88925
>emb|BX640905.1|HSM807042 Homo sapiens mRNA; cDNA DKFZp686L17106 (from clone DKFZp686L17106); complete cds Length = 10123 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 3674 atgaacttgagctatgttgatgta 3651
>gb|AF164690.1|AF164690 Homo sapiens nucleophosmin 1 (NPM1P19) pseudogene, complete sequence Length = 1107 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 290 ctgcttcaacaatgtgcaattcat 267
>gb|AF164689.1|AF164689 Homo sapiens nucleophosmin 1 (NPM1P18) pseudogene, complete sequence Length = 1185 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 292 ctgcttcaacaatgtgcaattcat 269
>gb|AF164688.1|AF164688 Homo sapiens nucleophosmin 1 (NPM1P17) pseudogene, complete sequence Length = 914 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 474 ctgcttcaacaatgtgcaattcat 451
>gb|AC007159.4|AC007159 Homo sapiens, clone 2_A_4, complete sequence Length = 155021 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 32538 ctgcttcaacaatgtgcaattcat 32515
>dbj|AP003900.1| Homo sapiens genomic DNA, chromosome 21q, clone:CMP21-T171+S39, complete sequences Length = 85444 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cttcttcctcaacttcttct 369 |||||||||||||||||||| Sbjct: 20235 cttcttcctcaacttcttct 20254
>gb|AC152181.1| Mus musculus BAC clone RP24-321P19 from 15, complete sequence Length = 187733 Score = 40.1 bits (20), Expect = 8.5 Identities = 29/32 (90%) Strand = Plus / Minus Query: 132 atgaaaaaacagagaacaagaccaaaacatac 163 ||||| || ||||||||||||||| ||||||| Sbjct: 177900 atgaacaaccagagaacaagaccataacatac 177869
>emb|AL512346.41| Mouse DNA sequence from clone RP23-322E15 on chromosome X, complete sequence Length = 227395 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 445 attgggcgatgaatgtgatc 464 |||||||||||||||||||| Sbjct: 77648 attgggcgatgaatgtgatc 77629
>gb|L15319.1|HUMNUCPHOE Homo sapiens (clone NG6-4) processed pseudogene of nucleophosmin/B23, complete insertion site Length = 865 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 177 ctgcttcaacaatgtgcaattcat 154
>emb|AL133623.1|HSM801490 Homo sapiens mRNA; cDNA DKFZp434P0721 (from clone DKFZp434P0721); partial cds Length = 8281 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 410 atgaacttgagctaagttgatgta 433 |||||||||||||| ||||||||| Sbjct: 2003 atgaacttgagctatgttgatgta 1980
>gb|L15320.1|HUMNUCPHOF Homo sapiens (clone NG7-6) processed pseudogene of nucleophosmin/B23, complete repeat unit Length = 1700 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 1 ctgcttcaacaatgtgcacttcat 24 |||||||||||||||||| ||||| Sbjct: 570 ctgcttcaacaatgtgcagttcat 547
>emb|AL078472.3|HSB11L7C8 Homo sapiens chromosome 21 BAC B11L7C8, complete sequence Length = 75657 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 350 cttcttcctcaacttcttct 369 |||||||||||||||||||| Sbjct: 37966 cttcttcctcaacttcttct 37985 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,084,565 Number of Sequences: 3902068 Number of extensions: 5084565 Number of successful extensions: 99621 Number of sequences better than 10.0: 153 Number of HSP's better than 10.0 without gapping: 150 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 99251 Number of HSP's gapped (non-prelim): 372 length of query: 621 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 598 effective length of database: 17,143,297,704 effective search space: 10251692026992 effective search space used: 10251692026992 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)