Clone Name	rbags4p08
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	ref|NM_184994.1| Oryza sativa (japonica cultivar-group), mRNA	52	1e-04
2	gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3	52	1e-04
3	gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 geno...	52	1e-04
4	dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...	52	1e-04
5	dbj|AK065289.1| Oryza sativa (japonica cultivar-group) cDNA clon...	52	1e-04
6	dbj|AK061643.1| Oryza sativa (japonica cultivar-group) cDNA clon...	52	1e-04
7	gb|AY110974.1| Zea mays CL34483_1 mRNA sequence	46	0.008
8	gb|AY962822.1| Prunus armeniaca inosine-5'-monophosphate dehydro...	44	0.032
9	emb|AL844156.2| Mouse DNA sequence from clone RP23-274I9 on chro...	40	0.50
10	gb|AF068844.1|AF068844 Prunus persica inosine-5'-monophosphate d...	38	2.0
11	ref|NM_031371.2| Homo sapiens AT rich interactive domain 4B (RBP...	36	7.7
12	ref|NM_016374.4| Homo sapiens AT rich interactive domain 4B (RBP...	36	7.7
13	ref|XM_514285.1| PREDICTED: Pan troglodytes similar to AT rich i...	36	7.7
14	gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, co...	36	7.7
15	gb|AF208045.2| Homo sapiens breast cancer-associated antigen BRC...	36	7.7
16	ref|XM_873195.1| PREDICTED: Bos taurus similar to AT rich intera...	36	7.7
17	ref|XM_873095.1| PREDICTED: Bos taurus similar to AT rich intera...	36	7.7
18	ref|XM_872990.1| PREDICTED: Bos taurus similar to AT rich intera...	36	7.7
19	ref|XM_614437.2| PREDICTED: Bos taurus similar to AT rich intera...	36	7.7
20	ref|XM_864319.1| PREDICTED: Bos taurus similar to AT rich intera...	36	7.7
21	gb|BT014357.1| Lycopersicon esculentum clone 133634F, mRNA sequence	36	7.7
22	gb|BC062536.1| Homo sapiens AT rich interactive domain 4B (RBP1-...	36	7.7
23	ref|XM_543493.2| PREDICTED: Canis familiaris similar to spindle ...	36	7.7
24	ref|XM_847753.1| PREDICTED: Canis familiaris similar to spindle ...	36	7.7
25	ref|XM_861313.1| PREDICTED: Canis familiaris similar to spindle ...	36	7.7
26	gb|AY433959.1| Nicotiana tabacum inosine-5'-phosphate dehydrogen...	36	7.7
27	ref|XM_843623.1| PREDICTED: Canis familiaris similar to AT rich ...	36	7.7
28	ref|XM_851728.1| PREDICTED: Canis familiaris similar to AT rich ...	36	7.7
29	ref|XM_851687.1| PREDICTED: Canis familiaris similar to AT rich ...	36	7.7
30	ref|XM_546077.2| PREDICTED: Canis familiaris similar to AT rich ...	36	7.7
31	ref|XM_851602.1| PREDICTED: Canis familiaris similar to AT rich ...	36	7.7
32	ref|XM_851566.1| PREDICTED: Canis familiaris similar to AT rich ...	36	7.7
33	gb|BC017800.1| Homo sapiens AT rich interactive domain 4B (RBP1-...	36	7.7
34	emb|AL391994.28| Human DNA sequence from clone RP11-382D8 on chr...	36	7.7
35	emb|BX648820.1|HSM808971 Homo sapiens mRNA; cDNA DKFZp313M2420 (...	36	7.7
36	gb|BC048959.1| Homo sapiens AT rich interactive domain 4B (RBP1-...	36	7.7
37	gb|AF214114.2| Homo sapiens retinoblastoma-binding protein 1-lik...	36	7.7
38	gb|AY220790.1| Homo sapiens SIN3A-associated protein 180 mRNA, c...	36	7.7
39	dbj|AB210032.1| Homo sapiens mRNA for ARID4B variant protein, pa...	36	7.7
40	emb|AL591976.1| Listeria monocytogenes strain EGD, complete geno...	36	7.7
41	gb|BC104632.1| Homo sapiens AT rich interactive domain 4B (RBP1-...	36	7.7
42	dbj|AB030181.1| Homo sapiens mRNA for RBP1-like protein, complet...	36	7.7

---

>ref|NM_184994.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1859

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 4    gcaccaagatcttggaatccttggntaacagctngcattg 43
            ||||||||||||||||| |||||  |||||||| ||||||
Sbjct: 1379 gcaccaagatcttggaacccttgcttaacagcttgcattg 1340

---

>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 4        gcaccaagatcttggaatccttggntaacagctngcattg 43
                ||||||||||||||||| |||||  |||||||| ||||||
Sbjct: 32065914 gcaccaagatcttggaacccttgcttaacagcttgcattg 32065875

---

>gb|AC084320.10| Oryza sativa chromosome 3 BAC OSJNBa0091J19 genomic sequence, complete
             sequence
          Length = 178158

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                     
Query: 4     gcaccaagatcttggaatccttggntaacagctngcattg 43
             ||||||||||||||||| |||||  |||||||| ||||||
Sbjct: 67039 gcaccaagatcttggaacccttgcttaacagcttgcattg 67000

---

>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                        
Query: 4        gcaccaagatcttggaatccttggntaacagctngcattg 43
                ||||||||||||||||| |||||  |||||||| ||||||
Sbjct: 32156426 gcaccaagatcttggaacccttgcttaacagcttgcattg 32156387

---

>dbj|AK065289.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002M23, full
            insert sequence
          Length = 2774

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                    
Query: 4    gcaccaagatcttggaatccttggntaacagctngcattg 43
            ||||||||||||||||| |||||  |||||||| ||||||
Sbjct: 1466 gcaccaagatcttggaacccttgcttaacagcttgcattg 1427

---

>dbj|AK061643.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-036-B05, full
           insert sequence
          Length = 1018

 Score = 52.0 bits (26), Expect = 1e-04
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 4   gcaccaagatcttggaatccttggntaacagctngcattg 43
           ||||||||||||||||| |||||  |||||||| ||||||
Sbjct: 537 gcaccaagatcttggaacccttgcttaacagcttgcattg 498

---

>gb|AY110974.1| Zea mays CL34483_1 mRNA sequence
          Length = 759

 Score = 46.1 bits (23), Expect = 0.008
 Identities = 36/41 (87%)
 Strand = Plus / Minus

                                                    
Query: 3   tgcaccaagatcttggaatccttggntaacagctngcattg 43
           ||||||||||||||| ||||||||  |||| ||| ||||||
Sbjct: 405 tgcaccaagatcttgtaatccttgcttaactgcttgcattg 365

---

>gb|AY962822.1| Prunus armeniaca inosine-5'-monophosphate dehydrogenase mRNA,
           partial cds
          Length = 215

 Score = 44.1 bits (22), Expect = 0.032
 Identities = 35/40 (87%)
 Strand = Plus / Minus

                                                   
Query: 4   gcaccaagatcttggaatccttggntaacagctngcattg 43
           ||||||||||||||||| |||||  | |||||| ||||||
Sbjct: 169 gcaccaagatcttggaaaccttgtttcacagcttgcattg 130

---

>emb|AL844156.2| Mouse DNA sequence from clone RP23-274I9 on chromosome X, complete
             sequence
          Length = 148890

 Score = 40.1 bits (20), Expect = 0.50
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 3     tgcaccaagatcttggaatc 22
             ||||||||||||||||||||
Sbjct: 35470 tgcaccaagatcttggaatc 35489

---

>gb|AF068844.1|AF068844 Prunus persica inosine-5'-monophosphate dehydrogenase mRNA, partial
           cds
          Length = 683

 Score = 38.2 bits (19), Expect = 2.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                  
Query: 4   gcaccaagatcttggaatccttg 26
           ||||||||||||||||| |||||
Sbjct: 224 gcaccaagatcttggaaaccttg 202

---

>ref|NM_031371.2| Homo sapiens AT rich interactive domain 4B (RBP1- like) (ARID4B),
            transcript variant 2, mRNA
          Length = 5807

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1563 accaagatcttggaatcc 1580

---

>ref|NM_016374.4| Homo sapiens AT rich interactive domain 4B (RBP1- like) (ARID4B),
            transcript variant 1, mRNA
          Length = 6065

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1563 accaagatcttggaatcc 1580

---

>ref|XM_514285.1| PREDICTED: Pan troglodytes similar to AT rich interactive domain 4B
           (RBP1- like) isoform 1; Rb-binding protein homolog;
           retinoblastoma-binding protein 1-like 1; RBP1-like
           protein; retinoblastoma binding protein 1-like 1; breast
           carcinoma-associated antigen BCAA; breast cance...
           (LOC457835), mRNA
          Length = 3117

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 6   accaagatcttggaatcc 23
           ||||||||||||||||||
Sbjct: 791 accaagatcttggaatcc 808

---

>gb|AC102440.12| Mus musculus chromosome 1, clone RP24-146C18, complete sequence
          Length = 144770

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 21/22 (95%)
 Strand = Plus / Minus

                                   
Query: 6     accaagatcttggaatccttgg 27
             |||||| |||||||||||||||
Sbjct: 66341 accaagctcttggaatccttgg 66320

---

>gb|AF208045.2| Homo sapiens breast cancer-associated antigen BRCAA1 (BRCAA1) mRNA,
            complete cds
          Length = 5393

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1141 accaagatcttggaatcc 1158

---

>ref|XM_873195.1| PREDICTED: Bos taurus similar to AT rich interactive domain 4B
            isoform 1, transcript variant 6 (LOC534612), mRNA
          Length = 5774

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1558 accaagatcttggaatcc 1575

---

>ref|XM_873095.1| PREDICTED: Bos taurus similar to AT rich interactive domain 4B
            isoform 1, transcript variant 5 (LOC534612), mRNA
          Length = 5758

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1290 accaagatcttggaatcc 1307

---

>ref|XM_872990.1| PREDICTED: Bos taurus similar to AT rich interactive domain 4B
            isoform 1, transcript variant 4 (LOC534612), mRNA
          Length = 5711

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1243 accaagatcttggaatcc 1260

---

>ref|XM_614437.2| PREDICTED: Bos taurus similar to AT rich interactive domain 4B
           isoform 1, transcript variant 1 (LOC534612), mRNA
          Length = 5369

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 6   accaagatcttggaatcc 23
           ||||||||||||||||||
Sbjct: 901 accaagatcttggaatcc 918

---

>ref|XM_864319.1| PREDICTED: Bos taurus similar to AT rich interactive domain 4B
            isoform 1, transcript variant 2 (LOC534612), mRNA
          Length = 6026

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1558 accaagatcttggaatcc 1575

---

>gb|BT014357.1| Lycopersicon esculentum clone 133634F, mRNA sequence
          Length = 1793

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 34/40 (85%)
 Strand = Plus / Minus

                                                    
Query: 4    gcaccaagatcttggaatccttggntaacagctngcattg 43
            ||||| ||||| |||||||||||  | |||||| ||||||
Sbjct: 1515 gcacctagatcctggaatccttgttttacagcttgcattg 1476

---

>gb|BC062536.1| Homo sapiens AT rich interactive domain 4B (RBP1- like), mRNA (cDNA
            clone IMAGE:5014918), partial cds
          Length = 1734

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1545 accaagatcttggaatcc 1562

---

>ref|XM_543493.2| PREDICTED: Canis familiaris similar to spindle assembly associated
            Sfi1 homolog isoform a, transcript variant 1 (LOC486367),
            mRNA
          Length = 3672

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 3    tgcaccaagatcttggaa 20
            ||||||||||||||||||
Sbjct: 2081 tgcaccaagatcttggaa 2064

---

>ref|XM_847753.1| PREDICTED: Canis familiaris similar to spindle assembly associated
            Sfi1 homolog isoform a, transcript variant 3 (LOC486367),
            mRNA
          Length = 3765

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 3    tgcaccaagatcttggaa 20
            ||||||||||||||||||
Sbjct: 2174 tgcaccaagatcttggaa 2157

---

>ref|XM_861313.1| PREDICTED: Canis familiaris similar to spindle assembly associated
            Sfi1 homolog isoform a, transcript variant 4 (LOC486367),
            mRNA
          Length = 3622

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 3    tgcaccaagatcttggaa 20
            ||||||||||||||||||
Sbjct: 2016 tgcaccaagatcttggaa 1999

---

>gb|AY433959.1| Nicotiana tabacum inosine-5'-phosphate dehydrogenase (guaB) mRNA,
            partial cds
          Length = 1676

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 34/40 (85%)
 Strand = Plus / Minus

                                                    
Query: 4    gcaccaagatcttggaatccttggntaacagctngcattg 43
            ||||| ||||| |||||||||||  | |||||| ||||||
Sbjct: 1298 gcacctagatcctggaatccttgctttacagcttgcattg 1259

---

>ref|XM_843623.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 4B
            isoform 1, transcript variant 3 (LOC488959), mRNA
          Length = 6043

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1550 accaagatcttggaatcc 1567

---

>ref|XM_851728.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 4B
            isoform 1, transcript variant 7 (LOC488959), mRNA
          Length = 5799

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1558 accaagatcttggaatcc 1575

---

>ref|XM_851687.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 4B
            isoform 1, transcript variant 6 (LOC488959), mRNA
          Length = 6031

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1538 accaagatcttggaatcc 1555

---

>ref|XM_546077.2| PREDICTED: Canis familiaris similar to AT rich interactive domain 4B
            isoform 1, transcript variant 1 (LOC488959), mRNA
          Length = 5967

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1474 accaagatcttggaatcc 1491

---

>ref|XM_851602.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 4B
            isoform 1, transcript variant 5 (LOC488959), mRNA
          Length = 3776

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1551 accaagatcttggaatcc 1568

---

>ref|XM_851566.1| PREDICTED: Canis familiaris similar to AT rich interactive domain 4B
            isoform 1, transcript variant 4 (LOC488959), mRNA
          Length = 6051

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1558 accaagatcttggaatcc 1575

---

>gb|BC017800.1| Homo sapiens AT rich interactive domain 4B (RBP1- like), mRNA (cDNA
           clone IMAGE:4663973), containing frame-shift errors
          Length = 1193

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 6   accaagatcttggaatcc 23
           ||||||||||||||||||
Sbjct: 323 accaagatcttggaatcc 340

---

>emb|AL391994.28| Human DNA sequence from clone RP11-382D8 on chromosome 1 Contains the
            5' end of the ARID4B gene for AT rich interactive domain
            4B (RBP1- like), a ribosomal protein L23a (RPL23A)
            pseudogene, ubiquitin-conjugating enzyme E2G 1 (UBC7
            homolog, C. elegans) (UBE2G10 pseudogene, the GGPS1 gene
            for geranylgeranyl diphosphate synthase 1 and two CpG
            islands, complete sequence
          Length = 142273

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 3705 accaagatcttggaatcc 3688

---

>emb|BX648820.1|HSM808971 Homo sapiens mRNA; cDNA DKFZp313M2420 (from clone DKFZp313M2420)
          Length = 3824

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1547 accaagatcttggaatcc 1564

---

>gb|BC048959.1| Homo sapiens AT rich interactive domain 4B (RBP1- like), mRNA (cDNA
            clone IMAGE:5261610), partial cds
          Length = 2167

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1556 accaagatcttggaatcc 1573

---

>gb|AF214114.2| Homo sapiens retinoblastoma-binding protein 1-like 1 (RBBP1L1) mRNA,
            complete cds
          Length = 5804

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1561 accaagatcttggaatcc 1578

---

>gb|AY220790.1| Homo sapiens SIN3A-associated protein 180 mRNA, complete cds
          Length = 3939

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1097 accaagatcttggaatcc 1114

---

>dbj|AB210032.1| Homo sapiens mRNA for ARID4B variant protein, partial cds, clone:
            hh11923
          Length = 5544

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1474 accaagatcttggaatcc 1491

---

>emb|AL591976.1| Listeria monocytogenes strain EGD, complete genome, segment 4/12
          Length = 250050

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 38   gcattgcgtactgaataa 55
            ||||||||||||||||||
Sbjct: 6706 gcattgcgtactgaataa 6689

---

>gb|BC104632.1| Homo sapiens AT rich interactive domain 4B (RBP1- like), mRNA (cDNA
            clone IMAGE:4592624), partial cds
          Length = 1305

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                              
Query: 6    accaagatcttggaatcc 23
            ||||||||||||||||||
Sbjct: 1104 accaagatcttggaatcc 1121

---

>dbj|AB030181.1| Homo sapiens mRNA for RBP1-like protein, complete cds
          Length = 4405

 Score = 36.2 bits (18), Expect = 7.7
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 6   accaagatcttggaatcc 23
           ||||||||||||||||||
Sbjct: 722 accaagatcttggaatcc 739


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 151,254
Number of Sequences: 3902068
Number of extensions: 151254
Number of successful extensions: 37279
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 37181
Number of HSP's gapped (non-prelim): 98
length of query: 55
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 35
effective length of database: 17,155,003,908
effective search space: 600425136780
effective search space used: 600425136780
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)

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