ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5e14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467495.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1577 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>ref|XM_507526.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1578 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>ref|XM_506941.2| PREDICTED Oryza sativa (japonica cultivar-group), OJ2056_H01.33 mRNA Length = 1619 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 1533 aactcaaactcaaccctatgatggtaaa 1506
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 29843527 aactcaaactcaaccctatgatggtaaa 29843500
>dbj|AP004098.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ2056_H01 Length = 123428 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 99872 aactcaaactcaaccctatgatggtaaa 99845
>dbj|AP004040.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1008_D06 Length = 112768 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 492 aactcaaactcaaccctatgatggtaaa 465
>dbj|AK119207.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E01, full insert sequence Length = 1578 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 1492 aactcaaactcaaccctatgatggtaaa 1465
>dbj|AK100143.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011P12, full insert sequence Length = 1577 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 1491 aactcaaactcaaccctatgatggtaaa 1464
>dbj|AK073448.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033045A20, full insert sequence Length = 1618 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 1532 aactcaaactcaaccctatgatggtaaa 1505
>dbj|D12637.1|RICATADPT Oryza sativa (japonica cultivar-group) mRNA for ATP/ADP translocator, complete cds Length = 1564 Score = 48.1 bits (24), Expect = 0.011 Identities = 27/28 (96%) Strand = Plus / Minus Query: 81 aactcaaactcaaccctatgatagtaaa 108 |||||||||||||||||||||| ||||| Sbjct: 1477 aactcaaactcaaccctatgatggtaaa 1450
>emb|AJ620477.1| Angiococcus disciformis partial ORF16, ORF15, ORF14, ORF13, ORF12, ORF11, ORF10, ORF9, ORF8, ORF7, ORF6, ORF5, ORF4, ORF3, tubA gene, ORF2, tubZ gene, ORF1, tubB gene, tubC gene, tubD gene, tubE gene, tubF gene, ORF17, ORF18, ORF19, ORF20, tubG gene, ORF21, ORF22, ORF23 and ORF24, strain An d48 Length = 82868 Score = 42.1 bits (21), Expect = 0.68 Identities = 21/21 (100%) Strand = Plus / Plus Query: 145 ctggagttcgatgcctccacc 165 ||||||||||||||||||||| Sbjct: 45484 ctggagttcgatgcctccacc 45504
>gb|AC134827.4| Mus musculus BAC clone RP24-470E5 from 5, complete sequence Length = 193811 Score = 40.1 bits (20), Expect = 2.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 atgatagtaaatgttttgag 117 |||||||||||||||||||| Sbjct: 152272 atgatagtaaatgttttgag 152253
>dbj|AP004902.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT04G24, TM0060, complete sequence Length = 123078 Score = 40.1 bits (20), Expect = 2.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 73 catactcgaactcaaactcaaccc 96 ||||||| |||||||||||||||| Sbjct: 48909 catactcaaactcaaactcaaccc 48932 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,688,005 Number of Sequences: 3902068 Number of extensions: 1688005 Number of successful extensions: 110715 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 13 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 110674 Number of HSP's gapped (non-prelim): 41 length of query: 212 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 190 effective length of database: 17,147,199,772 effective search space: 3257967956680 effective search space used: 3257967956680 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
