ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4p04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY517480.1| Sulfolobus tengchongensis plasmid pTC, complete s... 42 2.4
2gb|AC132097.3| Mus musculus BAC clone RP24-395K4 from chromosome... 42 2.4
3gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome... 42 2.4
4gb|AC142333.1| Pan troglodytes BAC clone RP43-32G1 from 7, compl... 42 2.4
5emb|BX324130.5| Zebrafish DNA sequence from clone DKEY-30J16 in ... 42 2.4
6gb|AC097515.5| Homo sapiens BAC clone RP11-446J8 from 4, complet... 42 2.4
7dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
8dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic D... 42 2.4
9gb|AC104540.9| Mus musculus chromosome 5, clone RP23-301P15, com... 40 9.6
10gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chr... 40 9.6
11gb|AC005214.1| Homo sapiens chromosome 5, BAC clone 319C17 (LBNL... 40 9.6
12gb|AC091452.2| Mus musculus chromosome X clone RP23-124C16, comp... 40 9.6
13emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8... 40 9.6
14emb|Z48367.1|CEC33B4 Caenorhabditis elegans Cosmid C33B4, comple... 40 9.6
15gb|AC007033.3| Homo sapiens BAC clone RP11-28D14 from 7, complet... 40 9.6
16gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete se... 40 9.6
17emb|CR954966.2| Mouse DNA sequence from clone WI1-2342H11 on chr... 40 9.6
18emb|AL591076.5| Human DNA sequence from clone RP11-96I12 on chro... 40 9.6
19emb|AL022145.1|HS423N22 Human DNA sequence from clone RP3-423N22... 40 9.6
20gb|AC090579.6| Homo sapiens chromosome 8, clone RP11-649G15, com... 40 9.6
21gb|AC116353.2| Homo sapiens chromosome 5 clone RP11-515C16, comp... 40 9.6
22gb|AC103993.8| Homo sapiens chromosome 8, clone RP11-67H2, compl... 40 9.6
23gb|AE005945.1| Caulobacter crescentus CB15 section 271 of 359 of... 40 9.6
24gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, comple... 40 9.6
25dbj|AK024213.1| Homo sapiens cDNA FLJ14151 fis, clone MAMMA1003031 40 9.6
26gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence 40 9.6
27ref|XM_680301.1| PREDICTED: Danio rerio similar to NHL repeat co... 40 9.6
28gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete s... 40 9.6
29ref|NM_001026730.1| Caenorhabditis elegans CLC-type chloride cH... 40 9.6
30ref|NM_001026729.1| Caenorhabditis elegans CLC-type chloride cH... 40 9.6
31ref|NM_001026728.1| Caenorhabditis elegans CLC-type chloride cH... 40 9.6
32gb|AF319613.1|AF319613 Caenorhabditis elegans CLC-type chloride ... 40 9.6
33gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section ... 40 9.6
34emb|AL662923.21| Mouse DNA sequence from clone RP23-25A3 on chro... 40 9.6
35gb|AF173171.1|AF173171 Caenorhabditis elegans CLC chloride chann... 40 9.6
36emb|BX119962.3| Zebrafish DNA sequence from clone CH211-203L9 in... 40 9.6
37dbj|AP000856.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.6
38dbj|AP005355.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.6
39gb|AC163408.4| Mus musculus chromosome 5, clone RP24-300F2, comp... 40 9.6
40emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chr... 40 9.6
41gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome... 40 9.6
42dbj|AP004285.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 9.6 
>gb|AY517480.1| Sulfolobus tengchongensis plasmid pTC, complete sequence
          Length = 20417

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 291  agaaacaagggaccaagaaac 311
            |||||||||||||||||||||
Sbjct: 5343 agaaacaagggaccaagaaac 5363
to top
>gb|AC132097.3| Mus musculus BAC clone RP24-395K4 from chromosome 12, complete sequence
          Length = 149176

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 4     tggtacatgctatatataaca 24
             |||||||||||||||||||||
Sbjct: 14356 tggtacatgctatatataaca 14336
to top
>gb|AC125057.5| Mus musculus BAC clone RP23-399K1 from chromosome 12, complete sequence
          Length = 182276

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 4      tggtacatgctatatataaca 24
              |||||||||||||||||||||
Sbjct: 155829 tggtacatgctatatataaca 155809
to top
>gb|AC142333.1| Pan troglodytes BAC clone RP43-32G1 from 7, complete sequence
          Length = 173510

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 293   aaacaagggaccaagaaactg 313
             |||||||||||||||||||||
Sbjct: 81687 aaacaagggaccaagaaactg 81667
to top
>emb|BX324130.5| Zebrafish DNA sequence from clone DKEY-30J16 in linkage group 11,
              complete sequence
          Length = 209188

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 487    accacaccatctgacttggta 507
              |||||||||||||||||||||
Sbjct: 115109 accacaccatctgacttggta 115129
to top
>gb|AC097515.5| Homo sapiens BAC clone RP11-446J8 from 4, complete sequence
          Length = 165973

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 314   aaactttcattttgcagaaaa 334
             |||||||||||||||||||||
Sbjct: 84724 aaactttcattttgcagaaaa 84704
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 583      cccgacaatgatcaggccatg 603
                |||||||||||||||||||||
Sbjct: 24402874 cccgacaatgatcaggccatg 24402854
to top
>dbj|AP004097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1792_D02
          Length = 141649

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 583   cccgacaatgatcaggccatg 603
             |||||||||||||||||||||
Sbjct: 31080 cccgacaatgatcaggccatg 31060
to top
>gb|AC104540.9| Mus musculus chromosome 5, clone RP23-301P15, complete sequence
          Length = 221681

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 307    gaaactgaaactttcatttt 326
              ||||||||||||||||||||
Sbjct: 152771 gaaactgaaactttcatttt 152752
to top
>gb|AE017346.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 6, complete
              sequence
          Length = 1438950

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 442    tctccctctgggtaatcaat 461
              ||||||||||||||||||||
Sbjct: 579093 tctccctctgggtaatcaat 579112
to top
>gb|AC005214.1| Homo sapiens chromosome 5, BAC clone 319C17 (LBNL H159), complete
             sequence
          Length = 50511

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tagtagcaccaactaatatg 110
             ||||||||||||||||||||
Sbjct: 49121 tagtagcaccaactaatatg 49140
to top
>gb|AC091452.2| Mus musculus chromosome X clone RP23-124C16, complete sequence
          Length = 137750

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                        
Query: 40    tacaaataaaccacagnataatatata 66
             |||||||||||||||| |||| |||||
Sbjct: 79957 tacaaataaaccacagaataaaatata 79983
to top
>emb|CR962133.1| Medicago truncatula chromosome 5 clone mth2-17h8, COMPLETE SEQUENCE
          Length = 114811

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 5    ggtacatgctatatataaca 24
            ||||||||||||||||||||
Sbjct: 3931 ggtacatgctatatataaca 3950
to top
>emb|Z48367.1|CEC33B4 Caenorhabditis elegans Cosmid C33B4, complete sequence
          Length = 30112

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 507  agtagttctccattttgaaa 526
            ||||||||||||||||||||
Sbjct: 1178 agtagttctccattttgaaa 1159
to top
>gb|AC007033.3| Homo sapiens BAC clone RP11-28D14 from 7, complete sequence
          Length = 76385

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 593   atcaggccatgagccatcaa 612
             ||||||||||||||||||||
Sbjct: 45720 atcaggccatgagccatcaa 45739
to top
>gb|AC141923.27| Medicago truncatula clone mth2-7f19, complete sequence
          Length = 116685

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 5     ggtacatgctatatataaca 24
             ||||||||||||||||||||
Sbjct: 17160 ggtacatgctatatataaca 17141
to top
>emb|CR954966.2| Mouse DNA sequence from clone WI1-2342H11 on chromosome X, complete
            sequence
          Length = 23417

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 84   gaaagtttagtagcaccaactaat 107
            |||| |||||||||||||||||||
Sbjct: 4199 gaaattttagtagcaccaactaat 4176
to top
>emb|AL591076.5| Human DNA sequence from clone RP11-96I12 on chromosome 6 Contains the
            GPR6 gene for G protein-coupled receptor 6. Contains a
            CpG island, complete sequence
          Length = 93427

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 509  tagttctccattttgaaaat 528
            ||||||||||||||||||||
Sbjct: 6269 tagttctccattttgaaaat 6288
to top
>emb|AL022145.1|HS423N22 Human DNA sequence from clone RP3-423N22 on chromosome 1q24-25 Contains
             part of the ASTN gene for astrotactin, complete sequence
          Length = 135007

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   aagggaccaagaaactgaaa 316
             ||||||||||||||||||||
Sbjct: 40113 aagggaccaagaaactgaaa 40094
to top
>gb|AC090579.6| Homo sapiens chromosome 8, clone RP11-649G15, complete sequence
          Length = 186066

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   taataccacatcgaagcaaacatg 156
             ||||||||||| ||||||||||||
Sbjct: 82266 taataccacatggaagcaaacatg 82289
to top
>gb|AC116353.2| Homo sapiens chromosome 5 clone RP11-515C16, complete sequence
          Length = 220535

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tagtagcaccaactaatatg 110
           ||||||||||||||||||||
Sbjct: 402 tagtagcaccaactaatatg 383
to top
>gb|AC103993.8| Homo sapiens chromosome 8, clone RP11-67H2, complete sequence
          Length = 147742

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     atatataacaatgtagcagc 34
              ||||||||||||||||||||
Sbjct: 102906 atatataacaatgtagcagc 102887
to top
>gb|AE005945.1| Caulobacter crescentus CB15 section 271 of 359 of the complete genome
          Length = 13348

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 678  cagcgcttgctggggatgcg 697
            ||||||||||||||||||||
Sbjct: 7205 cagcgcttgctggggatgcg 7224
to top
>gb|AC011399.6| Homo sapiens chromosome 5 clone CTB-25P15, complete sequence
          Length = 174158

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 91    tagtagcaccaactaatatg 110
             ||||||||||||||||||||
Sbjct: 21202 tagtagcaccaactaatatg 21221
to top
>dbj|AK024213.1| Homo sapiens cDNA FLJ14151 fis, clone MAMMA1003031
          Length = 2406

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 91  tagtagcaccaactaatatg 110
           ||||||||||||||||||||
Sbjct: 420 tagtagcaccaactaatatg 401
to top
>gb|AC018991.10| Homo sapiens, clone RP11-448E20, complete sequence
          Length = 174049

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     atatataacaatgtagcagc 34
              ||||||||||||||||||||
Sbjct: 151855 atatataacaatgtagcagc 151874
to top
>ref|XM_680301.1| PREDICTED: Danio rerio similar to NHL repeat containing 2
           (LOC557264), mRNA
          Length = 2166

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 528 tcaagcagcaccactttccc 547
           ||||||||||||||||||||
Sbjct: 236 tcaagcagcaccactttccc 217
to top
>gb|AC015866.7|AC015866 Homo sapiens, clone RP11-59A1, complete sequence
          Length = 150564

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 15     atatataacaatgtagcagc 34
              ||||||||||||||||||||
Sbjct: 112861 atatataacaatgtagcagc 112880
to top
>ref|NM_001026730.1| Caenorhabditis elegans CLC-type  chloride cHannel family member
           (clh-2) (clh-2) mRNA, complete cds
          Length = 2879

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 507 agtagttctccattttgaaa 526
           ||||||||||||||||||||
Sbjct: 431 agtagttctccattttgaaa 412
to top
>ref|NM_001026729.1| Caenorhabditis elegans CLC-type  chloride cHannel family member
           (clh-2) (clh-2) mRNA, complete cds
          Length = 2628

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 507 agtagttctccattttgaaa 526
           ||||||||||||||||||||
Sbjct: 520 agtagttctccattttgaaa 501
to top
>ref|NM_001026728.1| Caenorhabditis elegans CLC-type  chloride cHannel family member
           (clh-2) (clh-2) mRNA, complete cds
          Length = 2936

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 507 agtagttctccattttgaaa 526
           ||||||||||||||||||||
Sbjct: 520 agtagttctccattttgaaa 501
to top
>gb|AF319613.1|AF319613 Caenorhabditis elegans CLC-type chloride channel CLH-2b mRNA,
           complete cds
          Length = 2861

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 507 agtagttctccattttgaaa 526
           ||||||||||||||||||||
Sbjct: 520 agtagttctccattttgaaa 501
to top
>gb|AE014845.1| Plasmodium falciparum 3D7 chromosome 12, section 2 of 9 of the complete
              sequence
          Length = 250531

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    tagaaacaacactccttgca 480
              ||||||||||||||||||||
Sbjct: 234871 tagaaacaacactccttgca 234852
to top
>emb|AL662923.21| Mouse DNA sequence from clone RP23-25A3 on chromosome X, complete
              sequence
          Length = 211977

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 312    tgaaactttcattttgcaga 331
              ||||||||||||||||||||
Sbjct: 115792 tgaaactttcattttgcaga 115811
to top
>gb|AF173171.1|AF173171 Caenorhabditis elegans CLC chloride channel protein (ceclc-2) mRNA,
           complete cds
          Length = 2901

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 507 agtagttctccattttgaaa 526
           ||||||||||||||||||||
Sbjct: 453 agtagttctccattttgaaa 434
to top
>emb|BX119962.3| Zebrafish DNA sequence from clone CH211-203L9 in linkage group 19,
             complete sequence
          Length = 190702

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 315   aactttcattttgcagaaaa 334
             ||||||||||||||||||||
Sbjct: 73416 aactttcattttgcagaaaa 73397
to top
>dbj|AP000856.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1539E1
          Length = 152130

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 133  taataccacatcgaagcaaacatg 156
            ||||||||||| ||||||||||||
Sbjct: 3626 taataccacatggaagcaaacatg 3649
to top
>dbj|AP005355.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1189A8, complete
              sequence
          Length = 151101

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 15     atatataacaatgtagcagc 34
              ||||||||||||||||||||
Sbjct: 114605 atatataacaatgtagcagc 114586
to top
>gb|AC163408.4| Mus musculus chromosome 5, clone RP24-300F2, complete sequence
          Length = 171463

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 307    gaaactgaaactttcatttt 326
              ||||||||||||||||||||
Sbjct: 122303 gaaactgaaactttcatttt 122322
to top
>emb|BX119994.7| Mouse DNA sequence from clone RP23-272G10 on chromosome X, complete
              sequence
          Length = 174006

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 25/27 (92%)
 Strand = Plus / Plus

                                         
Query: 40     tacaaataaaccacagnataatatata 66
              |||||||||||||||| |||| |||||
Sbjct: 132159 tacaaataaaccacagaataaaatata 132185
to top
>gb|AC170917.2| Mus musculus BAC clone RP23-160F6 from chromosome 1, complete
            sequence
          Length = 195784

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 440  gttctccctctgggtaatca 459
            ||||||||||||||||||||
Sbjct: 7009 gttctccctctgggtaatca 7028
to top
>dbj|AP004285.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1356H11
          Length = 145327

 Score = 40.1 bits (20), Expect = 9.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 133   taataccacatcgaagcaaacatg 156
             ||||||||||| ||||||||||||
Sbjct: 62405 taataccacatggaagcaaacatg 62428


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,424,007
Number of Sequences: 3902068
Number of extensions: 6424007
Number of successful extensions: 120372
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 120242
Number of HSP's gapped (non-prelim): 130
length of query: 703
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 680
effective length of database: 17,143,297,704
effective search space: 11657442438720
effective search space used: 11657442438720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top