>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score =  139 bits (70), Expect = 1e-29
 Identities = 203/246 (82%), Gaps = 6/246 (2%)
 Strand = Plus / Minus

                                                                           
Query: 379     gacttgtattgggctgaattctgcctcctgccttcctgagcaaccaacgtgctccttacg 438
               ||||| ||||| ||||||||||| |||||| ||||||||||||| | |||| | | | ||
Sbjct: 7544861 gacttatattgagctgaattctgtctcctggcttcctgagcaacaaccgtgtttcctgcg 7544802

                                                                           
Query: 439     tatgaagtgttcggagactctgctaatgggttggtgacgaacccaccctgaactccaaac 498
                |||||| ||| ||   ||||||||||||||||||||| |   |||||||||||||||||
Sbjct: 7544801 aatgaagcgtttgg---ctctgctaatgggttggtgacaa---caccctgaactccaaac 7544748

                                                                           
Query: 499     ttctgcctctcccacttatgagaagctctgacctcctcagagtggtttgctaggtcggac 558
               ||||||||||||||||| | ||||| ||||  |||||| |||| |||||||| |||||| 
Sbjct: 7544747 ttctgcctctcccacttgtaagaagttctgctctcctcggagtagtttgctatgtcggag 7544688

                                                                           
Query: 559     acggggtaccttgaaatgtatctaccaccatcattttttctccagaattttgggctcggg 618
               | || |||| | ||   ||||||||  ||||||| | ||||||||||||| |||||  ||
Sbjct: 7544687 atggagtacttggatgagtatctactgccatcatgtcttctccagaatttcgggctaagg 7544628

                     
Query: 619     atgcag 624
               ||||||
Sbjct: 7544627 atgcag 7544622

>dbj|AP004725.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0412C04
          Length = 146849

 Score =  139 bits (70), Expect = 1e-29
 Identities = 203/246 (82%), Gaps = 6/246 (2%)
 Strand = Plus / Minus

                                                                          
Query: 379    gacttgtattgggctgaattctgcctcctgccttcctgagcaaccaacgtgctccttacg 438
              ||||| ||||| ||||||||||| |||||| ||||||||||||| | |||| | | | ||
Sbjct: 104792 gacttatattgagctgaattctgtctcctggcttcctgagcaacaaccgtgtttcctgcg 104733

                                                                          
Query: 439    tatgaagtgttcggagactctgctaatgggttggtgacgaacccaccctgaactccaaac 498
               |||||| ||| ||   ||||||||||||||||||||| |   |||||||||||||||||
Sbjct: 104732 aatgaagcgtttgg---ctctgctaatgggttggtgacaa---caccctgaactccaaac 104679

                                                                          
Query: 499    ttctgcctctcccacttatgagaagctctgacctcctcagagtggtttgctaggtcggac 558
              ||||||||||||||||| | ||||| ||||  |||||| |||| |||||||| |||||| 
Sbjct: 104678 ttctgcctctcccacttgtaagaagttctgctctcctcggagtagtttgctatgtcggag 104619

                                                                          
Query: 559    acggggtaccttgaaatgtatctaccaccatcattttttctccagaattttgggctcggg 618
              | || |||| | ||   ||||||||  ||||||| | ||||||||||||| |||||  ||
Sbjct: 104618 atggagtacttggatgagtatctactgccatcatgtcttctccagaatttcgggctaagg 104559

                    
Query: 619    atgcag 624
              ||||||
Sbjct: 104558 atgcag 104553

>ref|XM_467700.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1959

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Minus

                                                                        
Query: 460  gctaatgggttggtgacgaacccaccctgaactccaaacttctgcctctcccacttatga 519
            ||||| ||||||||||| || |||||||||||||||||||| |||||  ||||||| | |
Sbjct: 1868 gctaacgggttggtgacaaaaccaccctgaactccaaacttttgccttccccacttgtaa 1809

                     
Query: 520  gaagctctg 528
            |||| ||||
Sbjct: 1808 gaagttctg 1800

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                            
Query: 460      gctaatgggttggtgacgaacccaccctgaactccaaacttctgcctctcccacttatga 519
                ||||| ||||||||||| || |||||||||||||||||||| |||||  ||||||| | |
Sbjct: 30949694 gctaacgggttggtgacaaaaccaccctgaactccaaacttttgccttccccacttgtaa 30949753

                         
Query: 520      gaagctctg 528
                |||| ||||
Sbjct: 30949754 gaagttctg 30949762

>dbj|AP004815.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0516G10
          Length = 148937

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                        
Query: 460  gctaatgggttggtgacgaacccaccctgaactccaaacttctgcctctcccacttatga 519
            ||||| ||||||||||| || |||||||||||||||||||| |||||  ||||||| | |
Sbjct: 4650 gctaacgggttggtgacaaaaccaccctgaactccaaacttttgccttccccacttgtaa 4709

                     
Query: 520  gaagctctg 528
            |||| ||||
Sbjct: 4710 gaagttctg 4718

>dbj|AP005112.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0684F11
          Length = 147731

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 60/69 (86%)
 Strand = Plus / Plus

                                                                          
Query: 460    gctaatgggttggtgacgaacccaccctgaactccaaacttctgcctctcccacttatga 519
              ||||| ||||||||||| || |||||||||||||||||||| |||||  ||||||| | |
Sbjct: 133271 gctaacgggttggtgacaaaaccaccctgaactccaaacttttgccttccccacttgtaa 133330

                       
Query: 520    gaagctctg 528
              |||| ||||
Sbjct: 133331 gaagttctg 133339

>gb|AY106868.1| Zea mays PCO072630 mRNA sequence
          Length = 1321

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 59/69 (85%), Gaps = 2/69 (2%)
 Strand = Plus / Minus

                                                                       
Query: 460 gctaatgggttggtgacgaacccaccctgaactccaaacttctgcctctcccacttatga 519
           ||||||||||| ||||| |||  ||||||||  |||||| |||||||||||||||| | |
Sbjct: 763 gctaatgggtttgtgacaaac--accctgaagcccaaacctctgcctctcccacttgtaa 706

                    
Query: 520 gaagctctg 528
           |||| ||||
Sbjct: 705 gaagttctg 697



 Score = 50.1 bits (25), Expect = 0.009
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                        
Query: 596 ttctccagaattttgggctcgggatgcag 624
           |||||||||||||||||||||| ||||||
Sbjct: 629 ttctccagaattttgggctcggaatgcag 601

>gb|AC147124.2| Mus musculus BAC clone RP24-163K4 from chromosome 7, complete sequence
          Length = 165569

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 142    ttcttgctttagagtctcacag 163
              ||||||||||||||||||||||
Sbjct: 103786 ttcttgctttagagtctcacag 103807

>gb|AC006063.1|AC006063 Homo sapiens 12p13.3 PAC RP3-377H17 (Roswell Park Cancer Institute Human
              PAC Library) complete sequence
          Length = 150001

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 245    attctggagaaaagaagaaaaa 266
              ||||||||||||||||||||||
Sbjct: 113765 attctggagaaaagaagaaaaa 113744

>gb|AF217490.1|AF217491S3 Homo sapiens fragile 16D oxido reductase (FOR) gene, exons 8, 9, and
             partial cds
          Length = 270752

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 146   tgctttagagtctcacaggct 166
             |||||||||||||||||||||
Sbjct: 20155 tgctttagagtctcacaggct 20175

>gb|AY623109.1| Homo sapiens TAF1 RNA polymerase II, TATA box binding protein
             (TBP)-associated factor, 250kDa (TAF1) gene, complete cds
          Length = 100711

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 205   aaagaaaactccataaattcatttacaaa 233
             ||||| |||||| ||||||||||||||||
Sbjct: 30330 aaagataactccctaaattcatttacaaa 30302

>gb|AC113580.3| Tetraodon nigroviridis clone GSTNA-28E1, complete sequence
          Length = 127223

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 246   ttctggagaaaagaagaaaaa 266
             |||||||||||||||||||||
Sbjct: 10964 ttctggagaaaagaagaaaaa 10984

>gb|AC109134.2| Homo sapiens chromosome 16 clone CTD-2343L8, complete sequence
          Length = 147101

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 146    tgctttagagtctcacaggct 166
              |||||||||||||||||||||
Sbjct: 116106 tgctttagagtctcacaggct 116126

>emb|AL590762.1|HSXDPA Homo sapiens chromosome X  sequence from 6 PACs 1 BAC and 1 cosmid,
              region GJB1-DXS559 map Xq13.1; segment 1/2, complete
              sequence
          Length = 305000

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 205    aaagaaaactccataaattcatttacaaa 233
              ||||| |||||| ||||||||||||||||
Sbjct: 236165 aaagataactccctaaattcatttacaaa 236137

>gb|AC108829.13| Mus musculus chromosome 3, clone RP23-159D18, complete sequence
          Length = 184470

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 204    aaaagaaaactccataaatt 223
              ||||||||||||||||||||
Sbjct: 102212 aaaagaaaactccataaatt 102193

>gb|AC121942.2| Mus musculus chromosome 13 clone RP24-211D12, complete sequence
          Length = 164932

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 78    agcaagaactgcagtcaggg 97
             ||||||||||||||||||||
Sbjct: 52838 agcaagaactgcagtcaggg 52819

>ref|XM_637333.1| Dictyostelium discoideum hypothetical protein (DDB0205517), partial
           mRNA
          Length = 3090

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 217 ataaattcatttacaaactc 236
           ||||||||||||||||||||
Sbjct: 415 ataaattcatttacaaactc 434

>gb|AC169083.1| Mus musculus chromosome 3, clone RP23-28D7, complete sequence
          Length = 215143

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   aaaagaaaactccataaatt 223
             ||||||||||||||||||||
Sbjct: 79407 aaaagaaaactccataaatt 79426

>gb|AC165280.3| Mus musculus chromosome 3, clone RP23-389C4, complete sequence
          Length = 201348

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   aaaagaaaactccataaatt 223
             ||||||||||||||||||||
Sbjct: 24797 aaaagaaaactccataaatt 24816

>gb|AC113501.7| Mus musculus chromosome 6, clone RP23-367E20, complete sequence
          Length = 196932

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 73    gctaaagcaagaactgcagtcagg 96
             |||||||||||||||||| |||||
Sbjct: 98002 gctaaagcaagaactgcactcagg 98025

>emb|Z77249.2|HS358H7 Human DNA sequence from clone RP3-358H7 on chromosome X Contains a
              DEAD-box protein pseudogene and the gene for a novel
              E2F-like protein (LOC51270), complete sequence
          Length = 148864

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 246    ttctggagaaaagaagaaaaaggc 269
              |||||||||||||||||| |||||
Sbjct: 118671 ttctggagaaaagaagaacaaggc 118694

>emb|AL671934.4| Human DNA sequence from clone RP11-508H18 on chromosome 6 Contains
            part of a novel gene, complete sequence
          Length = 61294

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 487  tgaactccaaacttctgcctctcc 510
            ||||||||||||| ||||||||||
Sbjct: 4746 tgaactccaaactactgcctctcc 4723

>emb|AL603704.9| Human DNA sequence from clone RP11-512M18 on chromosome 9, complete
             sequence
          Length = 41237

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   gagaaaagaagaaaaaggcc 270
             ||||||||||||||||||||
Sbjct: 17116 gagaaaagaagaaaaaggcc 17135

>emb|AL596182.28| Mouse DNA sequence from clone RP23-303F24 on chromosome 11 Contains a
             pseudogene similar to part of glyceraldehyde-3-phosphate
             dehydrogenase (Gapd), the Irf1 gene for interferon
             regulatory factor 1, a novel gene, the Slc22a5 gene for
             solute carrier family 22 (organic cation transporter)
             member 5, a ribosomal protein L27a (Rpl27a) pseudogene, a
             cyclin-dependent kinase 4 (Cdk4) pseudogene and two CpG
             islands, complete sequence
          Length = 191494

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   ccttcttgctttagagtctc 159
             ||||||||||||||||||||
Sbjct: 40439 ccttcttgctttagagtctc 40420

>emb|CR847545.11| Zebrafish DNA sequence from clone DKEY-184N3 in linkage group 5,
             complete sequence
          Length = 83135

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 589   tcattttttctccagaattt 608
             ||||||||||||||||||||
Sbjct: 71234 tcattttttctccagaattt 71253

>gb|AC182768.3| Pan troglodytes BAC clone CH251-178I17 from chromosome 7, complete
              sequence
          Length = 186886

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     acatgcatacaccaggacct 60
              ||||||||||||||||||||
Sbjct: 169317 acatgcatacaccaggacct 169336

>dbj|AK092550.1| Homo sapiens cDNA FLJ35231 fis, clone PROST2001465
          Length = 2046

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 41   acatgcatacaccaggacct 60
            ||||||||||||||||||||
Sbjct: 1307 acatgcatacaccaggacct 1326

>gb|AC006388.3| Homo sapiens BAC clone CTA-363M4 from 7, complete sequence
          Length = 59241

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 41    acatgcatacaccaggacct 60
             ||||||||||||||||||||
Sbjct: 44180 acatgcatacaccaggacct 44161

>dbj|AK080949.1| Mus musculus 4 days neonate male adipose cDNA, RIKEN full-length
            enriched library, clone:B430217B02 product:interferon
            regulatory factor 1, full insert sequence
          Length = 3074

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 140  ccttcttgctttagagtctc 159
            ||||||||||||||||||||
Sbjct: 2460 ccttcttgctttagagtctc 2441

>dbj|AK053162.1| Mus musculus 0 day neonate lung cDNA, RIKEN full-length enriched
           library, clone:E030022C11 product:hypothetical protein,
           full insert sequence
          Length = 916

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 140 ccttcttgctttagagtctc 159
           ||||||||||||||||||||
Sbjct: 685 ccttcttgctttagagtctc 704

>gb|AC153151.4| Mus musculus BAC clone RP23-82K6 from chromosome 13, complete sequence
          Length = 164635

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     agcaagaactgcagtcaggg 97
              ||||||||||||||||||||
Sbjct: 140097 agcaagaactgcagtcaggg 140078

>emb|BX640402.2| Chicken DNA sequence from clone WAG-10A12, complete sequence
          Length = 131863

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 498   cttctgcctctcccacttat 517
             ||||||||||||||||||||
Sbjct: 47618 cttctgcctctcccacttat 47637

>emb|AL929167.10| Mouse DNA sequence from clone RP23-5F14 on chromosome 2, complete
              sequence
          Length = 148751

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 214    tccataaattcatttacaaactca 237
              |||||||||||||||| |||||||
Sbjct: 108011 tccataaattcatttagaaactca 107988

>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 211     aactccataaattcatttac 230
               ||||||||||||||||||||
Sbjct: 3934690 aactccataaattcatttac 3934709

>gb|AC002546.1|AC002546 Homo sapiens chromosome 17, clone 193h18, complete sequence
          Length = 106420

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   tctggagaaaagaagaaaaa 266
             ||||||||||||||||||||
Sbjct: 67124 tctggagaaaagaagaaaaa 67105

>gb|AC139326.5| Mus musculus BAC clone RP24-341F20 from chromosome 3, complete sequence
          Length = 141290

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 204    aaaagaaaactccataaatt 223
              ||||||||||||||||||||
Sbjct: 131845 aaaagaaaactccataaatt 131864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,389,238
Number of Sequences: 3902068
Number of extensions: 6389238
Number of successful extensions: 149912
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 149697
Number of HSP's gapped (non-prelim): 211
length of query: 624
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 601
effective length of database: 17,143,297,704
effective search space: 10303121920104
effective search space used: 10303121920104
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)