ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5d23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009259.1| Triticum aestivum clone wlk4.pk0015.a10:fis, full insert mRNA sequence Length = 788 Score = 482 bits (243), Expect = e-133 Identities = 281/295 (95%) Strand = Plus / Minus Query: 40 gacgccgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagat 99 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 701 gacggcgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagat 642 Query: 100 ctcgtcccaccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctctt 159 ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 641 ctcctcccaccaggccttgacgtgcgggcgggaggccaccaggtccgccttggggctctt 582 Query: 160 ggtgagcatgaagaggtangacatgtggttggcgtcggcgagcgtgaaggcgtcgccttn 219 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 581 ggtgagcatgaagaggtaggacatgtggttggcgtcggcgagcgtgaaggcgtcgccggc 522 Query: 220 tangtacttgttcccggcggcgaggtgggcctcgtatacgtcgagcagcttgtcgaggtc 279 | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct: 521 caggtacttgttcccggcggcgaggtgggcctcgtagacgtcgagcagcttggcgaggtc 462 Query: 280 ggcggcgttcttgttcacctcggcggcgtcggtgggggcncccagcatgggcttg 334 |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 461 ggcggcgttcttgtccacctcggcggcgtcggtgggggcgcccagcatgggcttg 407
>emb|AJ440794.1|TAE440794 Triticum aestivum mRNA for glutathione transferase F5 (gstf5 gene) Length = 866 Score = 474 bits (239), Expect = e-131 Identities = 280/295 (94%) Strand = Plus / Minus Query: 40 gacgccgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagat 99 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 683 gacggcgggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagat 624 Query: 100 ctcgtcccaccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctctt 159 ||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct: 623 ctcctcccaccaggccttgacgtgcgggcgggaggccaccaggtccgccttggggctctt 564 Query: 160 ggtgagcatgaagaggtangacatgtggttggcgtcggcgagcgtgaaggcgtcgccttn 219 |||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| Sbjct: 563 ggtgagcatgaagaggtaggacatgtggttggcgtcggcgagcgggaaggcgtcgccggc 504 Query: 220 tangtacttgttcccggcggcgaggtgggcctcgtatacgtcgagcagcttgtcgaggtc 279 | ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct: 503 caggtacttgttcccggcggcgaggtgggcctcgtagacgtcgagcagcttggcgaggtc 444 Query: 280 ggcggcgttcttgttcacctcggcggcgtcggtgggggcncccagcatgggcttg 334 |||||||||||||| |||||||||||||||||||||||| ||||||||||||||| Sbjct: 443 ggcggcgttcttgtccacctcggcggcgtcggtgggggcgcccagcatgggcttg 389
>ref|NM_190039.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 666 Score = 83.8 bits (42), Expect = 3e-13 Identities = 128/157 (81%) Strand = Plus / Minus Query: 47 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 106 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 656 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 597 Query: 107 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 166 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 596 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 537 Query: 167 atgaagaggtangacatgtggttggcgtcggcgagcg 203 | | ||||| ||||||||||||||||||||||||| Sbjct: 536 aacagcaggtaggacatgtggttggcgtcggcgagcg 500 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Minus Query: 237 cggcgaggtgggcctcgtatacgtcgagca 266 ||||||||||||| ||||| |||||||||| Sbjct: 469 cggcgaggtgggcgtcgtagacgtcgagca 440
>gb|BT009137.1| Triticum aestivum clone wl1n.pk0040.b1:fis, full insert mRNA sequence Length = 920 Score = 83.8 bits (42), Expect = 3e-13 Identities = 104/125 (83%) Strand = Plus / Minus Query: 83 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 142 ||||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 669 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 610 Query: 143 tccgccttggggctcttggtgagcatgaagaggtangacatgtggttggcgtcggcgagc 202 | ||||||||| ||||| |||| || ||||| ||| ||||||||||||||||||| Sbjct: 609 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 550 Query: 203 gtgaa 207 ||||| Sbjct: 549 gtgaa 545
>emb|AJ010296.1|ZMA010296 Zea mays mRNA for glutathione transferase III(b) Length = 944 Score = 83.8 bits (42), Expect = 3e-13 Identities = 104/125 (83%) Strand = Plus / Minus Query: 83 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 142 ||||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 673 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 614 Query: 143 tccgccttggggctcttggtgagcatgaagaggtangacatgtggttggcgtcggcgagc 202 | ||||||||| ||||| |||| || ||||| ||| ||||||||||||||||||| Sbjct: 613 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 554 Query: 203 gtgaa 207 ||||| Sbjct: 553 gtgaa 549
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 83.8 bits (42), Expect = 3e-13 Identities = 128/157 (81%) Strand = Plus / Plus Query: 47 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 106 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 40955232 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 40955291 Query: 107 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 166 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 40955292 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 40955351 Query: 167 atgaagaggtangacatgtggttggcgtcggcgagcg 203 | | ||||| ||||||||||||||||||||||||| Sbjct: 40955352 aacagcaggtaggacatgtggttggcgtcggcgagcg 40955388 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 cggcgaggtgggcctcgtatacgtcgagca 266 ||||||||||||| ||||| |||||||||| Sbjct: 40955419 cggcgaggtgggcgtcgtagacgtcgagca 40955448
>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0423A12 Length = 178649 Score = 83.8 bits (42), Expect = 3e-13 Identities = 128/157 (81%) Strand = Plus / Plus Query: 47 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 106 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 83657 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 83716 Query: 107 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 166 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 83717 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 83776 Query: 167 atgaagaggtangacatgtggttggcgtcggcgagcg 203 | | ||||| ||||||||||||||||||||||||| Sbjct: 83777 aacagcaggtaggacatgtggttggcgtcggcgagcg 83813 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Plus Query: 237 cggcgaggtgggcctcgtatacgtcgagca 266 ||||||||||||| ||||| |||||||||| Sbjct: 83844 cggcgaggtgggcgtcgtagacgtcgagca 83873
>dbj|AK103927.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-D04, full insert sequence Length = 871 Score = 83.8 bits (42), Expect = 3e-13 Identities = 128/157 (81%) Strand = Plus / Minus Query: 47 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 106 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 737 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 678 Query: 107 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 166 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 677 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 618 Query: 167 atgaagaggtangacatgtggttggcgtcggcgagcg 203 | | ||||| ||||||||||||||||||||||||| Sbjct: 617 aacagcaggtaggacatgtggttggcgtcggcgagcg 581 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Minus Query: 237 cggcgaggtgggcctcgtatacgtcgagca 266 ||||||||||||| ||||| |||||||||| Sbjct: 550 cggcgaggtgggcgtcgtagacgtcgagca 521
>dbj|AK059985.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-G06, full insert sequence Length = 963 Score = 83.8 bits (42), Expect = 3e-13 Identities = 128/157 (81%) Strand = Plus / Minus Query: 47 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 106 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 812 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 753 Query: 107 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 166 ||||| ||||||||||| || | ||| || || || |||||| |||| |||||| ||| Sbjct: 752 caccacgccttgacgtgcggcctggacgcgacgagctccgccatgggcgtcttggagagg 693 Query: 167 atgaagaggtangacatgtggttggcgtcggcgagcg 203 | | ||||| ||||||||||||||||||||||||| Sbjct: 692 aacagcaggtaggacatgtggttggcgtcggcgagcg 656 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Minus Query: 237 cggcgaggtgggcctcgtatacgtcgagca 266 ||||||||||||| ||||| |||||||||| Sbjct: 625 cggcgaggtgggcgtcgtagacgtcgagca 596
>gb|AY105647.1| Zea mays PCO132886 mRNA sequence Length = 1003 Score = 83.8 bits (42), Expect = 3e-13 Identities = 104/125 (83%) Strand = Plus / Minus Query: 83 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 142 ||||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 752 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 693 Query: 143 tccgccttggggctcttggtgagcatgaagaggtangacatgtggttggcgtcggcgagc 202 | ||||||||| ||||| |||| || ||||| ||| ||||||||||||||||||| Sbjct: 692 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 633 Query: 203 gtgaa 207 ||||| Sbjct: 632 gtgaa 628
>emb|AJ010295.1|ZMA010295 Zea mays mRNA for glutathione transferase III(a) Length = 906 Score = 77.8 bits (39), Expect = 2e-11 Identities = 155/194 (79%), Gaps = 3/194 (1%) Strand = Plus / Minus Query: 83 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcgggaggccaccagg 142 |||||||||||| ||| | |||||||| ||||||||||||||||||| ||| || || Sbjct: 684 gcggggcgggcgacgatggcctcccaccaggccttgacgtgggggcgggcggcgacgagc 625 Query: 143 tccgccttggggctcttggtgagcatgaagaggtangacatgtggttggcgtcggcgagc 202 | ||||||||| ||||| |||| || ||||| ||| ||||||||||||||||||| Sbjct: 624 ccggccttgggggtcttgctgaggtagagcaggtaggacgcgtggttggcgtcggcgagc 565 Query: 203 gtgaaggcgtcgccttntangtacttgttcccggcggcgaggtgggcctcgtatacgtcg 262 ||||| |||| || | ||||||||| | ||||||||| |||||||| |||||| Sbjct: 564 gtgaactcgtccccggcgaggtacttgtt---gcgggcgaggtgcgcctcgtacacgtcg 508 Query: 263 agcagcttgtcgag 276 |||| |||| |||| Sbjct: 507 agcaccttggcgag 494
>gb|AF309383.1| Oryza sativa (japonica cultivar-group) clone S10202_1A putative glutathione S-transferase OsGSTF4 mRNA, complete cds Length = 1032 Score = 75.8 bits (38), Expect = 8e-11 Identities = 127/157 (80%) Strand = Plus / Minus Query: 47 ggcgggagggggatggaggcgacggtcttggcccaggcggggcgggcggagatctcgtcc 106 ||||||| |||||||| |||| ||||||| ||| || ||||| | |||||| |||||| Sbjct: 736 ggcgggaaggggatggcggcggcggtcttcttccacgccgggcgcgaggagatgtcgtcc 677 Query: 107 caccaagccttgacgtgggggcgggaggccaccaggtccgccttggggctcttggtgagc 166 ||||| ||||||||||| || | | | || || || |||||| |||| |||||| ||| Sbjct: 676 caccacgccttgacgtgcggcctgaacgcgacgagctccgccatgggcgtcttggagagg 617 Query: 167 atgaagaggtangacatgtggttggcgtcggcgagcg 203 | | ||||| ||||||||||||||||||||||||| Sbjct: 616 aacagcaggtaggacatgtggttggcgtcggcgagcg 580 Score = 44.1 bits (22), Expect = 0.28 Identities = 28/30 (93%) Strand = Plus / Minus Query: 237 cggcgaggtgggcctcgtatacgtcgagca 266 ||||||||||||| ||||| |||||||||| Sbjct: 549 cggcgaggtgggcgtcgtagacgtcgagca 520
>emb|X06755.1|ZMGST3 Maize mRNA for GSH gluthathione S-transferase III (GST;EC 2.5.1.18) Length = 913 Score = 58.0 bits (29), Expect = 2e-05 Identities = 44/49 (89%) Strand = Plus / Minus Query: 83 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggggcggg 131 ||||||||||||| ||| | |||||||| ||||||||||||||||||| Sbjct: 685 gcggggcgggcggcgatggcctcccaccaggccttgacgtgggggcggg 637 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 184 gtggttggcgtcggcgagcgtgaa 207 |||||||||||||||||||||||| Sbjct: 581 gtggttggcgtcggcgagcgtgaa 558
>emb|X04455.1|ZMGGST3B Maize mRNA for glutathione-S-transferase GSTIII (clone GSTIIIB) Length = 859 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 184 gtggttggcgtcggcgagcgtgaa 207 |||||||||||||||||||||||| Sbjct: 533 gtggttggcgtcggcgagcgtgaa 510 Score = 40.1 bits (20), Expect = 4.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 83 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggg 126 |||||||||||| ||| | |||||||| |||||||||||||| Sbjct: 632 gcggggcgggcgacgatggcctcccaccaggccttgacgtgggg 589
>emb|X04375.1|ZMGST3A Maize mRNA for glutathione-S-transferase GSTIII (clone GSTIIIA) Length = 840 Score = 48.1 bits (24), Expect = 0.018 Identities = 24/24 (100%) Strand = Plus / Minus Query: 184 gtggttggcgtcggcgagcgtgaa 207 |||||||||||||||||||||||| Sbjct: 514 gtggttggcgtcggcgagcgtgaa 491 Score = 40.1 bits (20), Expect = 4.4 Identities = 38/44 (86%) Strand = Plus / Minus Query: 83 gcggggcgggcggagatctcgtcccaccaagccttgacgtgggg 126 |||||||||||| ||| | |||||||| |||||||||||||| Sbjct: 613 gcggggcgggcgacgatggcctcccaccaggccttgacgtgggg 570
>emb|BX640425.1| Bordetella parapertussis strain 12822, complete genome; segment 3/14 Length = 348257 Score = 46.1 bits (23), Expect = 0.072 Identities = 29/31 (93%) Strand = Plus / Minus Query: 258 cgtcgagcagcttgtcgaggtcggcggcgtt 288 |||||||||||||||| |||||||| ||||| Sbjct: 122088 cgtcgagcagcttgtccaggtcggccgcgtt 122058
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 cggcgagcgtgaaggcgtcgcc 216 |||||||||||||||||||||| Sbjct: 28948955 cggcgagcgtgaaggcgtcgcc 28948976
>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome Length = 3052398 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 262 gagcagcttgtcgaggtcggcg 283 |||||||||||||||||||||| Sbjct: 826685 gagcagcttgtcgaggtcggcg 826706
>dbj|AP004052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1218_D07 Length = 114511 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Plus Query: 195 cggcgagcgtgaaggcgtcgcc 216 |||||||||||||||||||||| Sbjct: 32013 cggcgagcgtgaaggcgtcgcc 32034
>dbj|AK100068.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013163B17, full insert sequence Length = 3301 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 195 cggcgagcgtgaaggcgtcgcc 216 |||||||||||||||||||||| Sbjct: 1545 cggcgagcgtgaaggcgtcgcc 1524
>gb|L76359.1|STMDRRC Streptomyces peucetius daunorubicin resistance protein (drrC) gene, complete cds Length = 3374 Score = 44.1 bits (22), Expect = 0.28 Identities = 22/22 (100%) Strand = Plus / Minus Query: 259 gtcgagcagcttgtcgaggtcg 280 |||||||||||||||||||||| Sbjct: 1458 gtcgagcagcttgtcgaggtcg 1437
>gb|AE010304.1| Methanopyrus kandleri AV19 section 3 of 157 of the complete genome Length = 12000 Score = 42.1 bits (21), Expect = 1.1 Identities = 33/37 (89%) Strand = Plus / Plus Query: 261 cgagcagcttgtcgaggtcggcggcgttcttgttcac 297 |||||||| | |||||||||||||||| |||| |||| Sbjct: 5216 cgagcagcgtctcgaggtcggcggcgtacttgatcac 5252
>gb|AC104284.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1735_C10, complete sequence Length = 187034 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 cggcggcgttcttgttcacctcggcggcg 307 ||||| ||||||||||||||||| ||||| Sbjct: 36631 cggcgccgttcttgttcacctcgacggcg 36659
>gb|AY805459.1| Uncultured bacterium clone CR6 carbon monoxide dehydrogenase form II large subunit gene, partial cds Length = 939 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 259 gtcgagcagcttgtcgaggtcggcg 283 ||||||| ||||||||||||||||| Sbjct: 46 gtcgagcggcttgtcgaggtcggcg 70
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 cgtcgagcagcttgtcgaggtcggc 282 |||||| |||||||||||||||||| Sbjct: 3945186 cgtcgaacagcttgtcgaggtcggc 3945162
>emb|CR555308.1| Azoarcus sp. EbN1 plasmid 2 Length = 223670 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 ggcgtcggcgagcgtgaaggcgtcg 214 |||||||||||||||| |||||||| Sbjct: 79705 ggcgtcggcgagcgtgtaggcgtcg 79729 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Plus Query: 190 ggcgtcggcgagcgtgaaggcgtcg 214 |||||||||||||||| |||||||| Sbjct: 69578 ggcgtcggcgagcgtgtaggcgtcg 69602
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 42.1 bits (21), Expect = 1.1 Identities = 24/25 (96%) Strand = Plus / Minus Query: 258 cgtcgagcagcttgtcgaggtcggc 282 |||||| |||||||||||||||||| Sbjct: 246602 cgtcgaacagcttgtcgaggtcggc 246578
>tpg|BK005022.1| TPA: TPA_inf: Oryza sativa (japonica cultivar-group) WRKY transcription factor 19 (WRKY19) gene, complete cds Length = 1047 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 cggcggcgttcttgttcacctcggcggcg 307 ||||| ||||||||||||||||| ||||| Sbjct: 842 cggcgccgttcttgttcacctcgacggcg 870
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 cggcggcgttcttgttcacctcggcggcg 307 ||||| ||||||||||||||||| ||||| Sbjct: 28252389 cggcgccgttcttgttcacctcgacggcg 28252417
>dbj|AK108389.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-F03, full insert sequence Length = 1040 Score = 42.1 bits (21), Expect = 1.1 Identities = 27/29 (93%) Strand = Plus / Plus Query: 279 cggcggcgttcttgttcacctcggcggcg 307 ||||| ||||||||||||||||| ||||| Sbjct: 701 cggcgccgttcttgttcacctcgacggcg 729
>gb|U59552.1|HGU59552 Hepatitis GB virus C, isolate 36, 5'-untranslated region Length = 590 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 gccgggcgggagggggatgga 63 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59551.1|HGU59551 Hepatitis GB virus C, isolate 35, 5'-untranslated region Length = 591 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 gccgggcgggagggggatgga 63 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59550.1|HGU59550 Hepatitis GB virus C, isolate 34, 5'-untranslated region Length = 590 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 gccgggcgggagggggatgga 63 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59549.1|HGU59549 Hepatitis GB virus C, isolate 33, 5'-untranslated region Length = 591 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 gccgggcgggagggggatgga 63 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|U59548.1|HGU59548 Hepatitis GB virus C, isolate 32, 5'-untranslated region Length = 591 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 gccgggcgggagggggatgga 63 ||||||||||||||||||||| Sbjct: 351 gccgggcgggagggggatgga 371
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 gcaaccggcaccggcgacct 36 |||||||||||||||||||| Sbjct: 1903709 gcaaccggcaccggcgacct 1903728
>ref|XM_481808.1| Oryza sativa (japonica cultivar-group), mRNA Length = 843 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cacctcggcggcgtcggtgg 314 |||||||||||||||||||| Sbjct: 233 cacctcggcggcgtcggtgg 252
>ref|XM_479856.1| Oryza sativa (japonica cultivar-group), mRNA Length = 819 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 198 cgagcgtgaaggcgtcgcct 217 |||||||||||||||||||| Sbjct: 250 cgagcgtgaaggcgtcgcct 231
>gb|CP000144.1| Rhodobacter sphaeroides 2.4.1 chromosome 2, complete genome Length = 943016 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 40 gacgccgggcgggaggggga 59 |||||||||||||||||||| Sbjct: 674243 gacgccgggcgggaggggga 674262
>gb|CP000143.1| Rhodobacter sphaeroides 2.4.1 chromosome 1, complete genome Length = 3188609 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 cacctcggcggcgtcggtgggggc 318 ||||||||||||| |||||||||| Sbjct: 1800409 cacctcggcggcggcggtgggggc 1800386
>gb|AC101738.16| Mus musculus chromosome 1, clone RP23-472N5, complete sequence Length = 183026 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 ctcttggtgagcatgaagag 174 |||||||||||||||||||| Sbjct: 32888 ctcttggtgagcatgaagag 32907
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 atacgtcgagcagcttgtcg 274 |||||||||||||||||||| Sbjct: 1242010 atacgtcgagcagcttgtcg 1242029
>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome Length = 2584158 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 cggggcgggcggagatctcg 103 |||||||||||||||||||| Sbjct: 1453948 cggggcgggcggagatctcg 1453967
>ref|XM_957202.1| Neurospora crassa OR74A hypothetical protein (NCU07709.1) partial mRNA Length = 687 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ggatggaggcgacggtcttg 76 |||||||||||||||||||| Sbjct: 477 ggatggaggcgacggtcttg 496
>ref|XM_328414.1| Neurospora crassa OR74A hypothetical protein (NCU07709.1) partial mRNA Length = 687 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 57 ggatggaggcgacggtcttg 76 |||||||||||||||||||| Sbjct: 477 ggatggaggcgacggtcttg 496
>gb|CP000115.1| Nitrobacter winogradskyi Nb-255, complete genome Length = 3402093 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 tcgaggtcggcggcgttctt 291 |||||||||||||||||||| Sbjct: 3118403 tcgaggtcggcggcgttctt 3118422
>gb|CP000270.1| Burkholderia xenovorans LB400 chromosome 1, complete sequence Length = 4895836 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 260 tcgagcagcttgtcgaggtcggcg 283 ||||||||||||||||| |||||| Sbjct: 3191390 tcgagcagcttgtcgagctcggcg 3191413
>ref|XM_780527.1| PREDICTED: Strongylocentrotus purpuratus similar to Rab40b, member RAS oncogene family (LOC580472), mRNA Length = 678 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 catgtggttggcgtcggcga 200 |||||||||||||||||||| Sbjct: 570 catgtggttggcgtcggcga 551
>gb|BT009600.1| Triticum aestivum clone wre1n.pk0078.d7:fis, full insert mRNA sequence Length = 583 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 104 tcccaccaagccttgacgtg 123 |||||||||||||||||||| Sbjct: 358 tcccaccaagccttgacgtg 339
>ref|XM_779903.1| PREDICTED: Strongylocentrotus purpuratus similar to Rab40b, member RAS oncogene family (LOC579808), mRNA Length = 474 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 181 catgtggttggcgtcggcga 200 |||||||||||||||||||| Sbjct: 366 catgtggttggcgtcggcga 347
>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13 Length = 349306 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 atacgtcgagcagcttgtcg 274 |||||||||||||||||||| Sbjct: 208675 atacgtcgagcagcttgtcg 208694
>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14 Length = 327650 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 atacgtcgagcagcttgtcg 274 |||||||||||||||||||| Sbjct: 256833 atacgtcgagcagcttgtcg 256852
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cacctcggcggcgtcggtgg 314 |||||||||||||||||||| Sbjct: 9798229 cacctcggcggcgtcggtgg 9798210
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ctcggcggcgtcggtggggg 317 |||||||||||||||||||| Sbjct: 20860828 ctcggcggcgtcggtggggg 20860847
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cacctcggcggcgtcggtgg 314 |||||||||||||||||||| Sbjct: 15675631 cacctcggcggcgtcggtgg 15675612 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cgagcgtgaaggcgtcgcct 217 |||||||||||||||||||| Sbjct: 1285140 cgagcgtgaaggcgtcgcct 1285159
>dbj|AP005730.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0073J19 Length = 165174 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 cgagcgtgaaggcgtcgcct 217 |||||||||||||||||||| Sbjct: 114447 cgagcgtgaaggcgtcgcct 114466
>dbj|AP006174.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0229B10 Length = 114509 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ctcggcggcgtcggtggggg 317 |||||||||||||||||||| Sbjct: 53054 ctcggcggcgtcggtggggg 53073
>dbj|AP006067.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0569E11 Length = 157319 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 298 ctcggcggcgtcggtggggg 317 |||||||||||||||||||| Sbjct: 135857 ctcggcggcgtcggtggggg 135876
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E11 Length = 150200 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cacctcggcggcgtcggtgg 314 |||||||||||||||||||| Sbjct: 109786 cacctcggcggcgtcggtgg 109767
>dbj|AK067973.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013128G24, full insert sequence Length = 1367 Score = 40.1 bits (20), Expect = 4.4 Identities = 26/28 (92%) Strand = Plus / Minus Query: 261 cgagcagcttgtcgaggtcggcggcgtt 288 |||||| || |||||||||||||||||| Sbjct: 264 cgagcatctggtcgaggtcggcggcgtt 237
>gb|AY105753.1| Zea mays PCO104274 mRNA sequence Length = 714 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 234 cggcggcgaggtgggcctcg 253 |||||||||||||||||||| Sbjct: 367 cggcggcgaggtgggcctcg 348
>gb|AF018073.1|AF018073 Rhodobacter sphaeroides operon regulator (smoC), periplasmic sorbitol-binding protein (smoE), sorbitol/mannitol transport inner membrane protein (smoF), sorbitol/mannitol transport inner membrane protein (smoG), sorbitol/mannitol transport ATP-binding transport protein (smoK), sorbitol dehydrogenase (smoS), mannitol dehydrogenase (mtlK), and periplasmic mannitol-binding protein (smoM) genes, complete cds Length = 9810 Score = 40.1 bits (20), Expect = 4.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 295 cacctcggcggcgtcggtgggggc 318 ||||||||||||| |||||||||| Sbjct: 1001 cacctcggcggcggcggtgggggc 978
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cacctcggcggcgtcggtgg 314 |||||||||||||||||||| Sbjct: 9798114 cacctcggcggcgtcggtgg 9798095
>emb|AL928779.3|CNS08CC9 Oryza sativa chromosome 12, . BAC OSJNBa0054I14 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148089 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 cacctcggcggcgtcggtgg 314 |||||||||||||||||||| Sbjct: 124186 cacctcggcggcgtcggtgg 124167
>emb|AL954870.3|CNS08CD9 Oryza sativa chromosome 12, . BAC OSJNBb0112E17 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140806 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 295 cacctcggcggcgtcggtgg 314 |||||||||||||||||||| Sbjct: 134241 cacctcggcggcgtcggtgg 134260
>dbj|AB015870.1| Vitis vinifera gene for phenylalanine ammonia-lyase, partial cds Length = 1938 Score = 40.1 bits (20), Expect = 4.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 42 cgccgggcgggagggggatg 61 |||||||||||||||||||| Sbjct: 471 cgccgggcgggagggggatg 490 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,945,021 Number of Sequences: 3902068 Number of extensions: 1945021 Number of successful extensions: 43712 Number of sequences better than 10.0: 66 Number of HSP's better than 10.0 without gapping: 67 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 42662 Number of HSP's gapped (non-prelim): 1039 length of query: 335 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 313 effective length of database: 17,147,199,772 effective search space: 5367073528636 effective search space used: 5367073528636 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
