ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5d21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
2dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic D... 168 1e-38
3dbj|AK101412.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 1e-38
4dbj|AP005765.3| Oryza sativa (japonica cultivar-group) genomic D... 139 1e-29
5dbj|AK101117.1| Oryza sativa (japonica cultivar-group) cDNA clon... 139 1e-29
6gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complet... 44 0.56
7gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome 42 2.2
8ref|NM_191915.1| Oryza sativa (japonica cultivar-group), predic... 42 2.2
9gb|AC114045.5| Rattus norvegicus 20 BAC CH230-187J1 (Children's ... 42 2.2
10gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genom... 42 2.2
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 42 2.2
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
13dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
14dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
15dbj|AK064663.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.2
16ref|NM_127281.1| Arabidopsis thaliana HSK (HOMOSERINE KINASE); h... 40 8.8
17gb|AC137104.11| Mus musculus chromosome 1, clone RP23-241K20, co... 40 8.8
18gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome ... 40 8.8
19gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 8.8
20gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 8.8
21gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 8.8
22gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete s... 40 8.8
23gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete s... 40 8.8
24gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete s... 40 8.8
25gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete s... 40 8.8
26ref|XM_948081.1| Theileria annulata strain Ankara hypothetical p... 40 8.8
27ref|XM_503121.1| Yarrowia lipolytica CLIB122, YALI0D21648g predi... 40 8.8
28gb|AC162946.4| Mus musculus BAC clone RP23-38M11 from chromosome... 40 8.8
29emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cos... 40 8.8
30emb|AL607091.12| Mouse DNA sequence from clone RP23-287F5 on chr... 40 8.8
31gb|AY128313.1| Arabidopsis thaliana 3-hydroxy-3-methylglutaryl-c... 40 8.8
32gb|AC008514.8| Homo sapiens chromosome 5 clone CTC-455F18, compl... 40 8.8
33gb|AC158996.2| Mus musculus BAC clone RP24-137I10 from chromosom... 40 8.8
34emb|BX818902.1|CNS0A8Z1 Arabidopsis thaliana Full-length cDNA Co... 40 8.8
35emb|BX820071.1|CNS0A8G4 Arabidopsis thaliana Full-length cDNA Co... 40 8.8
36emb|BX819939.1|CNS0A8F7 Arabidopsis thaliana Full-length cDNA Co... 40 8.8
37gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome... 40 8.8
38gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II sectio... 40 8.8
39dbj|AK117871.2| Arabidopsis thaliana At2g17265 mRNA for putative... 40 8.8
40gb|AF082525.1|AF082525 Arabidopsis thaliana homoserine kinase (H... 40 8.8
41emb|BX950865.11| Zebrafish DNA sequence from clone DKEYP-100E12 ... 40 8.8
42dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 8.8
43gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 8.8
44gb|AC147971.2| Gallus gallus BAC clone CH261-79K6 from chromosom... 40 8.8
45gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complet... 40 8.8
46emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB1... 40 8.8
47emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB1... 40 8.8
48gb|BT001174.1| Arabidopsis thaliana 3-hydroxy-3-methylglutaryl-c... 40 8.8
49emb|AL732619.13| Mouse DNA sequence from clone RP23-122I3 on chr... 40 8.8 
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  168 bits (85), Expect = 1e-38
 Identities = 196/233 (84%)
 Strand = Plus / Plus

                                                                           
Query: 332     ttctcatactctgccttttgaaagtcgctgaatctggaggtgtcagccatcaacagctct 391
               ||||||||||||||||| ||||| ||   ||| || || ||||| |||| ||||||||| 
Sbjct: 8915653 ttctcatactctgccttctgaaactcatcgaaccttgaagtgtctgccagcaacagctcc 8915712

                                                                           
Query: 392     gaatacttctcgtaaagcgttgtttccttcttgtcctttgcttcctgttgctttagcttg 451
               |  ||||||| |||||| || ||||||||||| ||| ||||||| |  |||||||   ||
Sbjct: 8915713 gtgtacttcttgtaaagtgtagtttccttcttctcccttgcttcttcctgctttattctg 8915772

                                                                           
Query: 452     gcgaactcaagcttctctttcgagagacggagctgtacctctgacatcttctcacgatcc 511
               || || ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| 
Sbjct: 8915773 gccaattcaagctgctctttcgagaggcggagctgtacctctgacatcttcacacgatca 8915832

                                                                    
Query: 512     ttcataagcatggtctgaagatccactgcacgtttgatgtcttcctgcacctc 564
               ||  |||||||||||||||||| ||  ||| ||||||||||||| ||||||||
Sbjct: 8915833 ttgttaagcatggtctgaagatgcatcgcatgtttgatgtcttcttgcacctc 8915885



 Score =  139 bits (70), Expect = 1e-29
 Identities = 193/234 (82%)
 Strand = Plus / Plus

                                                                           
Query: 332     ttctcatactctgccttttgaaagtcgctgaatctggaggtgtcagccatcaacagctct 391
               ||||||||||||||||| ||||| ||    || || || ||||| |||| ||||||||||
Sbjct: 8825624 ttctcatactctgccttctgaaactcatcaaaccttgaagtgtctgccagcaacagctct 8825683

                                                                           
Query: 392     gaatacttctcgtaaagcgttgtttccttcttgtcctttgcttcctgttgctttagcttg 451
               |  || |||  |||||| | |||||| |||||  | || ||||| |  |||||||   ||
Sbjct: 8825684 gtgtatttcatgtaaagtgctgtttctttctttacattcgcttcatcctgctttattctg 8825743

                                                                           
Query: 452     gcgaactcaagcttctctttcgagagacggagctgtacctctgacatcttctcacgatcc 511
               || || ||||||| |||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 8825744 gccaattcaagctgctctttcgagaggcggagctgtacctctgacattttctcacgatca 8825803

                                                                     
Query: 512     ttcataagcatggtctgaagatccactgcacgtttgatgtcttcctgcacctca 565
               ||  ||||||||||||||||||  | |||| |||||||||||||||||||||||
Sbjct: 8825804 ttgttaagcatggtctgaagatataatgcatgtttgatgtcttcctgcacctca 8825857
to top
>dbj|AP005801.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0045M11
          Length = 159148

 Score =  168 bits (85), Expect = 1e-38
 Identities = 196/233 (84%)
 Strand = Plus / Plus

                                                                         
Query: 332   ttctcatactctgccttttgaaagtcgctgaatctggaggtgtcagccatcaacagctct 391
             ||||||||||||||||| ||||| ||   ||| || || ||||| |||| ||||||||| 
Sbjct: 75960 ttctcatactctgccttctgaaactcatcgaaccttgaagtgtctgccagcaacagctcc 76019

                                                                         
Query: 392   gaatacttctcgtaaagcgttgtttccttcttgtcctttgcttcctgttgctttagcttg 451
             |  ||||||| |||||| || ||||||||||| ||| ||||||| |  |||||||   ||
Sbjct: 76020 gtgtacttcttgtaaagtgtagtttccttcttctcccttgcttcttcctgctttattctg 76079

                                                                         
Query: 452   gcgaactcaagcttctctttcgagagacggagctgtacctctgacatcttctcacgatcc 511
             || || ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| 
Sbjct: 76080 gccaattcaagctgctctttcgagaggcggagctgtacctctgacatcttcacacgatca 76139

                                                                  
Query: 512   ttcataagcatggtctgaagatccactgcacgtttgatgtcttcctgcacctc 564
             ||  |||||||||||||||||| ||  ||| ||||||||||||| ||||||||
Sbjct: 76140 ttgttaagcatggtctgaagatgcatcgcatgtttgatgtcttcttgcacctc 76192
to top
>dbj|AK101412.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033037J10, full
            insert sequence
          Length = 2721

 Score =  168 bits (85), Expect = 1e-38
 Identities = 196/233 (84%)
 Strand = Plus / Minus

                                                                        
Query: 332  ttctcatactctgccttttgaaagtcgctgaatctggaggtgtcagccatcaacagctct 391
            ||||||||||||||||| ||||| ||   ||| || || ||||| |||| ||||||||| 
Sbjct: 2195 ttctcatactctgccttctgaaactcatcgaaccttgaagtgtctgccagcaacagctcc 2136

                                                                        
Query: 392  gaatacttctcgtaaagcgttgtttccttcttgtcctttgcttcctgttgctttagcttg 451
            |  ||||||| |||||| || ||||||||||| ||| ||||||| |  |||||||   ||
Sbjct: 2135 gtgtacttcttgtaaagtgtagtttccttcttctcccttgcttcttcctgctttattctg 2076

                                                                        
Query: 452  gcgaactcaagcttctctttcgagagacggagctgtacctctgacatcttctcacgatcc 511
            || || ||||||| |||||||||||| |||||||||||||||||||||||| ||||||| 
Sbjct: 2075 gccaattcaagctgctctttcgagaggcggagctgtacctctgacatcttcacacgatca 2016

                                                                 
Query: 512  ttcataagcatggtctgaagatccactgcacgtttgatgtcttcctgcacctc 564
            ||  |||||||||||||||||| ||  ||| ||||||||||||| ||||||||
Sbjct: 2015 ttgttaagcatggtctgaagatgcatcgcatgtttgatgtcttcttgcacctc 1963
to top
>dbj|AP005765.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0023G13
          Length = 144694

 Score =  139 bits (70), Expect = 1e-29
 Identities = 193/234 (82%)
 Strand = Plus / Plus

                                                                         
Query: 332   ttctcatactctgccttttgaaagtcgctgaatctggaggtgtcagccatcaacagctct 391
             ||||||||||||||||| ||||| ||    || || || ||||| |||| ||||||||||
Sbjct: 93995 ttctcatactctgccttctgaaactcatcaaaccttgaagtgtctgccagcaacagctct 94054

                                                                         
Query: 392   gaatacttctcgtaaagcgttgtttccttcttgtcctttgcttcctgttgctttagcttg 451
             |  || |||  |||||| | |||||| |||||  | || ||||| |  |||||||   ||
Sbjct: 94055 gtgtatttcatgtaaagtgctgtttctttctttacattcgcttcatcctgctttattctg 94114

                                                                         
Query: 452   gcgaactcaagcttctctttcgagagacggagctgtacctctgacatcttctcacgatcc 511
             || || ||||||| |||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 94115 gccaattcaagctgctctttcgagaggcggagctgtacctctgacattttctcacgatca 94174

                                                                   
Query: 512   ttcataagcatggtctgaagatccactgcacgtttgatgtcttcctgcacctca 565
             ||  ||||||||||||||||||  | |||| |||||||||||||||||||||||
Sbjct: 94175 ttgttaagcatggtctgaagatataatgcatgtttgatgtcttcctgcacctca 94228
to top
>dbj|AK101117.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033025H14, full
            insert sequence
          Length = 2272

 Score =  139 bits (70), Expect = 1e-29
 Identities = 193/234 (82%)
 Strand = Plus / Minus

                                                                        
Query: 332  ttctcatactctgccttttgaaagtcgctgaatctggaggtgtcagccatcaacagctct 391
            ||||||||||||||||| ||||| ||    || || || ||||| |||| ||||||||||
Sbjct: 1913 ttctcatactctgccttctgaaactcatcaaaccttgaagtgtctgccagcaacagctct 1854

                                                                        
Query: 392  gaatacttctcgtaaagcgttgtttccttcttgtcctttgcttcctgttgctttagcttg 451
            |  || |||  |||||| | |||||| |||||  | || ||||| |  |||||||   ||
Sbjct: 1853 gtgtatttcatgtaaagtgctgtttctttctttacattcgcttcatcctgctttattctg 1794

                                                                        
Query: 452  gcgaactcaagcttctctttcgagagacggagctgtacctctgacatcttctcacgatcc 511
            || || ||||||| |||||||||||| |||||||||||||||||||| ||||||||||| 
Sbjct: 1793 gccaattcaagctgctctttcgagaggcggagctgtacctctgacattttctcacgatca 1734

                                                                  
Query: 512  ttcataagcatggtctgaagatccactgcacgtttgatgtcttcctgcacctca 565
            ||  ||||||||||||||||||  | |||| |||||||||||||||||||||||
Sbjct: 1733 ttgttaagcatggtctgaagatataatgcatgtttgatgtcttcctgcacctca 1680
to top
>gb|AC154374.1| Mus musculus BAC clone RP23-81F24 from 9, complete sequence
          Length = 169272

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 197   caggccaaatcagcaggtataa 218
             ||||||||||||||||||||||
Sbjct: 43114 caggccaaatcagcaggtataa 43093
to top
>gb|AY958085.1| Staurastrum punctulatum chloroplast, complete genome
          Length = 157089

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 517    aagcatggtctgaagatccactgca 541
              ||||||||||| |||||||||||||
Sbjct: 125132 aagcatggtctcaagatccactgca 125108
to top
>ref|NM_191915.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 501

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 325 caccgccttctcatactctgc 345
           |||||||||||||||||||||
Sbjct: 441 caccgccttctcatactctgc 421
to top
>gb|AC114045.5| Rattus norvegicus 20 BAC CH230-187J1 (Children's Hospital Oakland
              Research Institute) complete sequence
          Length = 211095

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 111    tggtcatttgaaatctaggcaagag 135
              |||| ||||||||||||||||||||
Sbjct: 104031 tggttatttgaaatctaggcaagag 104007
to top
>gb|AC092076.7| Oryza sativa chromosome 3 BAC OSJNBb0021G19 genomic sequence, complete
             sequence
          Length = 141582

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 382   caacagctctgaatacttctc 402
             |||||||||||||||||||||
Sbjct: 42432 caacagctctgaatacttctc 42412
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 382      caacagctctgaatacttctc 402
                |||||||||||||||||||||
Sbjct: 32837109 caacagctctgaatacttctc 32837129
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 382      caacagctctgaatacttctc 402
                |||||||||||||||||||||
Sbjct: 32927619 caacagctctgaatacttctc 32927639
to top
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 325      caccgccttctcatactctgc 345
                |||||||||||||||||||||
Sbjct: 27232770 caccgccttctcatactctgc 27232750
to top
>dbj|AP003760.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:OSJNBb0063G05
          Length = 182681

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 325   caccgccttctcatactctgc 345
             |||||||||||||||||||||
Sbjct: 13287 caccgccttctcatactctgc 13267
to top
>dbj|AK064663.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-115-A10, full
           insert sequence
          Length = 722

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 325 caccgccttctcatactctgc 345
           |||||||||||||||||||||
Sbjct: 452 caccgccttctcatactctgc 432
to top
>ref|NM_127281.1| Arabidopsis thaliana HSK (HOMOSERINE KINASE); homoserine kinase
            AT2G17265 (HSK) mRNA, complete cds
          Length = 1168

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1045 tggaaagttggtcatttgaaatct 1068
to top
>gb|AC137104.11| Mus musculus chromosome 1, clone RP23-241K20, complete sequence
          Length = 171622

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 80    gttctccctccagttttagg 99
             ||||||||||||||||||||
Sbjct: 49847 gttctccctccagttttagg 49866
to top
>gb|AC122893.6| Mus musculus BAC clone RP23-67C3 from chromosome 17, complete sequence
          Length = 206456

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 414   tttccttcttgtcctttgct 433
             ||||||||||||||||||||
Sbjct: 52104 tttccttcttgtcctttgct 52085
to top
>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     tcagcaggtataacaacatc 225
               ||||||||||||||||||||
Sbjct: 2206476 tcagcaggtataacaacatc 2206457
to top
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     tcagcaggtataacaacatc 225
               ||||||||||||||||||||
Sbjct: 2186945 tcagcaggtataacaacatc 2186926
to top
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     tcagcaggtataacaacatc 225
               ||||||||||||||||||||
Sbjct: 2186927 tcagcaggtataacaacatc 2186908
to top
>gb|AC149426.1| Populus trichocarpa clone Pop1-053A03, complete sequence
          Length = 148552

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   atctctaccaaataacatct 311
             ||||||||||||||||||||
Sbjct: 34113 atctctaccaaataacatct 34132
to top
>gb|AC149425.1| Populus trichocarpa clone Pop1-041F22, complete sequence
          Length = 106128

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 292   atctctaccaaataacatct 311
             ||||||||||||||||||||
Sbjct: 32061 atctctaccaaataacatct 32080
to top
>gb|AC149424.1| Populus trichocarpa clone Pop1-011N15, complete sequence
          Length = 152544

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   atctctaccaaataacatct 311
             ||||||||||||||||||||
Sbjct: 66849 atctctaccaaataacatct 66830
to top
>gb|AC149295.1| Populus trichocarpa clone Pop1-008L01, complete sequence
          Length = 101981

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 292   atctctaccaaataacatct 311
             ||||||||||||||||||||
Sbjct: 16252 atctctaccaaataacatct 16233
to top
>ref|XM_948081.1| Theileria annulata strain Ankara hypothetical protein (TA08840)
            partial mRNA
          Length = 3576

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 239  ttcagcagaagcgtttgata 258
            ||||||||||||||||||||
Sbjct: 1410 ttcagcagaagcgtttgata 1429
to top
>ref|XM_503121.1| Yarrowia lipolytica CLIB122, YALI0D21648g predicted mRNA
          Length = 1350

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 329 gccttctcatactctgccttttga 352
           ||||||||||||||| ||||||||
Sbjct: 950 gccttctcatactctcccttttga 927
to top
>gb|AC162946.4| Mus musculus BAC clone RP23-38M11 from chromosome 9, complete sequence
          Length = 183012

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 518   agcatggtctgaagatccac 537
             ||||||||||||||||||||
Sbjct: 58449 agcatggtctgaagatccac 58430
to top
>emb|BX294012.1|NC80A10 Neurospora crassa DNA linkage group V Cosmid contig 80A10
          Length = 161126

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 212   ggtataacaacatcgacaaa 231
             ||||||||||||||||||||
Sbjct: 40492 ggtataacaacatcgacaaa 40511
to top
>emb|AL607091.12| Mouse DNA sequence from clone RP23-287F5 on chromosome 11 Contains the
             3' end of the gene for a novel protein similar to human
             PDZ domain containing guanine nucleotide exchange factor
             (GEF) 2 PDZGEF2 and the 3' end of the gene for a novel
             protein similar to human non-kinase Cdc42 effector protein
             SPEC2, complete sequence
          Length = 192912

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   atataacctactaaattaac 275
             ||||||||||||||||||||
Sbjct: 91968 atataacctactaaattaac 91987
to top
>gb|AY128313.1| Arabidopsis thaliana 3-hydroxy-3-methylglutaryl-coenzyme A reductase
            2 (At2g17265) mRNA, complete cds
          Length = 1333

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1127 tggaaagttggtcatttgaaatct 1150
to top
>gb|AC008514.8| Homo sapiens chromosome 5 clone CTC-455F18, complete sequence
          Length = 172525

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 43    ccaaagttcaacttcaatccatca 66
             ||||||||||| ||||||||||||
Sbjct: 80219 ccaaagttcaaattcaatccatca 80242
to top
>gb|AC158996.2| Mus musculus BAC clone RP24-137I10 from chromosome 9, complete sequence
          Length = 154654

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 482   agctgtacctctgacatctt 501
             ||||||||||||||||||||
Sbjct: 83604 agctgtacctctgacatctt 83623
to top
>emb|BX818902.1|CNS0A8Z1 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTFB24ZG09 of Flowers and buds of strain col-0 of
            Arabidopsis thaliana (thale cress)
          Length = 1275

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1116 tggaaagttggtcatttgaaatct 1139
to top
>emb|BX820071.1|CNS0A8G4 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS70ZG05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1293

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1108 tggaaagttggtcatttgaaatct 1131
to top
>emb|BX819939.1|CNS0A8F7 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS51ZD10 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1311

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1111 tggaaagttggtcatttgaaatct 1134
to top
>gb|AC154185.1| Mus musculus BAC clone RP24-67L15 from chromosome 17, complete sequence
          Length = 167726

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 342   ctgccttttgaaagtcgctg 361
             ||||||||||||||||||||
Sbjct: 47968 ctgccttttgaaagtcgctg 47987
to top
>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete
             sequence. Sequence from clones T23A1, F5J6, MJB20
          Length = 76170

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 103   tggagagttggtcatttgaaatct 126
             |||| |||||||||||||||||||
Sbjct: 10449 tggaaagttggtcatttgaaatct 10472
to top
>dbj|AK117871.2| Arabidopsis thaliana At2g17265 mRNA for putative homoserine kinase
            (HSK), complete cds, clone: RAFL19-05-A14
          Length = 1266

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1061 tggaaagttggtcatttgaaatct 1084
to top
>gb|AF082525.1|AF082525 Arabidopsis thaliana homoserine kinase (HSK) mRNA, complete cds
          Length = 1225

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1045 tggaaagttggtcatttgaaatct 1068
to top
>emb|BX950865.11| Zebrafish DNA sequence from clone DKEYP-100E12 in linkage group 6,
             complete sequence
          Length = 162517

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 117   tttgaaatctaggcaagagctgga 140
             |||||||||| |||||||||||||
Sbjct: 58952 tttgaaatctcggcaagagctgga 58929
to top
>dbj|AP001830.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-315O6, complete
             sequence
          Length = 214483

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   gttgtttccttcttgtcctt 429
             ||||||||||||||||||||
Sbjct: 62113 gttgtttccttcttgtcctt 62094
to top
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 206     tcagcaggtataacaacatc 225
               ||||||||||||||||||||
Sbjct: 2186821 tcagcaggtataacaacatc 2186802
to top
>gb|AC147971.2| Gallus gallus BAC clone CH261-79K6 from chromosome unknown, complete
              sequence
          Length = 229445

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 335    tcatactctgccttttgaaa 354
              ||||||||||||||||||||
Sbjct: 142749 tcatactctgccttttgaaa 142768
to top
>gb|AC151735.3| Mus musculus BAC clone RP23-24D16 from 9, complete sequence
          Length = 201762

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 518    agcatggtctgaagatccac 537
              ||||||||||||||||||||
Sbjct: 200011 agcatggtctgaagatccac 199992
to top
>emb|CR382130.1| Yarrowia lipolytica chromosome D of strain CLIB122 of Yarrowia lipolytica
          Length = 3633272

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 329     gccttctcatactctgccttttga 352
               ||||||||||||||| ||||||||
Sbjct: 2738442 gccttctcatactctcccttttga 2738465
to top
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica
          Length = 2303261

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 288     tatcatctctaccaaataacatct 311
               ||||||||||||||||| ||||||
Sbjct: 1931894 tatcatctctaccaaatgacatct 1931917
to top
>gb|BT001174.1| Arabidopsis thaliana 3-hydroxy-3-methylglutaryl-coenzyme A reductase
            2' /protein_id='AAM91516.1 (At2g17265) mRNA, complete cds
          Length = 1188

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 103  tggagagttggtcatttgaaatct 126
            |||| |||||||||||||||||||
Sbjct: 1027 tggaaagttggtcatttgaaatct 1050
to top
>emb|AL732619.13| Mouse DNA sequence from clone RP23-122I3 on chromosome 4, complete
             sequence
          Length = 225086

 Score = 40.1 bits (20), Expect = 8.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 578   aacgccttgccttggcgttt 597
             ||||||||||||||||||||
Sbjct: 11096 aacgccttgccttggcgttt 11115


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,264,617
Number of Sequences: 3902068
Number of extensions: 5264617
Number of successful extensions: 93235
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 92904
Number of HSP's gapped (non-prelim): 328
length of query: 646
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 623
effective length of database: 17,143,297,704
effective search space: 10680274469592
effective search space used: 10680274469592
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top