ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4o21 |
|---|---|
| Clone Library Name | barley_pub |
>SRPRB_MOUSE (P47758) Signal recognition particle receptor beta subunit| (SR-beta) Length = 269 Score = 46.2 bits (108), Expect = 9e-05 Identities = 26/70 (37%), Positives = 36/70 (51%) Frame = -2 Query: 655 DEFLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHS 476 D F A VVFVVD+ F ++ AE+LY +L + +K +LI CNK D A S Sbjct: 128 DRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKS 187 Query: 475 KGVHQEAAGK 446 + Q+ K Sbjct: 188 AKLIQQQLEK 197 Score = 40.0 bits (92), Expect = 0.006 Identities = 30/82 (36%), Positives = 42/82 (51%), Gaps = 8/82 (9%) Frame = -3 Query: 516 LYSAIKQTKLLLTRKEFIKKQLEKEVNKLRESRNAISS---ADITDEIELGVPGEAFNFS 346 L + KQ + + I++QLEKE+N LR +R+A S + T +LG G+ F FS Sbjct: 174 LIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFS 233 Query: 345 QCQNKVTVAE-----GAGLTGN 295 Q KV E G G TG+ Sbjct: 234 QLPLKVEFLECSAKGGRGDTGS 255
>SRPRB_HUMAN (Q9Y5M8) Signal recognition particle receptor beta subunit| (SR-beta) (Protein APMCF1) Length = 271 Score = 42.4 bits (98), Expect = 0.001 Identities = 24/70 (34%), Positives = 35/70 (50%) Frame = -2 Query: 655 DEFLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHS 476 + F A +VFVVD+ F ++ AE+LY +L + +K LI CNK D A S Sbjct: 130 ERFKSSARAIVFVVDSAAFQREVKDVAEFLYQVLIDSMGLKNTPSFLIACNKQDIAMAKS 189 Query: 475 KGVHQEAAGK 446 + Q+ K Sbjct: 190 AKLIQQQLEK 199 Score = 41.6 bits (96), Expect = 0.002 Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 5/85 (5%) Frame = -3 Query: 519 FLYSAIKQTKLLLTRKEFIKKQLEKEVNKLRESRNAISS---ADITDEIELGVPGEAFNF 349 FL + KQ + + I++QLEKE+N LR +R+A S + T +LG G+ F F Sbjct: 175 FLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEF 234 Query: 348 SQCQNKVTVAE--GAGLTGNVSAVE 280 SQ KV E G G+V + + Sbjct: 235 SQLPLKVEFLECSAKGGRGDVGSAD 259
>SAR1A_MOUSE (P36536) GTP-binding protein SAR1a| Length = 198 Score = 37.0 bits (84), Expect = 0.052 Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 7/75 (9%) Frame = -2 Query: 649 FLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHS-- 476 +LP G+VF+VD D M++ E L ++ T+ VP+LI NK D+ A S Sbjct: 89 YLPAINGIVFLVDCADHSRLMESKVE-LNALMTDETI--SNVPILILGNKIDRTDAISEE 145 Query: 475 -----KGVHQEAAGK 446 KG++ + GK Sbjct: 146 KLREIKGLYGQTTGK 160
>SAR1_ASPNG (P52886) GTP-binding protein sarA| Length = 189 Score = 36.2 bits (82), Expect = 0.088 Identities = 29/89 (32%), Positives = 43/89 (48%), Gaps = 7/89 (7%) Frame = -2 Query: 652 EFLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTA--- 482 ++ P +G+VF+VDA+D ++ AE L +LA + K VP LI NK D A Sbjct: 83 DYFPEVSGIVFLVDAKDHECFPESKAE-LDALLAMEELAK--VPFLILGNKIDHPDAVSE 139 Query: 481 ----HSKGVHQEAAGKRSEQASGIEECDI 407 H G++Q GK GI ++ Sbjct: 140 DDVRHQLGLYQ-TTGKGKVPLEGIRPIEV 167
>SAR1_TRIRE (P78976) GTP-binding protein SAR1| Length = 189 Score = 35.0 bits (79), Expect = 0.20 Identities = 30/89 (33%), Positives = 41/89 (46%), Gaps = 7/89 (7%) Frame = -2 Query: 652 EFLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTA--- 482 ++ P GVVF+VDA+D +A AE D L + K VP +I NK D A Sbjct: 83 DYFPDVNGVVFLVDAKDHERFPEAKAE--LDALLSMEELSK-VPFVILGNKIDHPDAVSE 139 Query: 481 ----HSKGVHQEAAGKRSEQASGIEECDI 407 H G++Q GK Q GI ++ Sbjct: 140 DELRHQLGLYQ-TTGKGRVQLEGIRPIEL 167
>ARL6_PONPY (Q5R4G5) ADP-ribosylation factor-like protein 6| Length = 186 Score = 34.7 bits (78), Expect = 0.26 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -2 Query: 655 DEFLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTD 494 + + ++FV+D+ D L M A E L +L + +R+P+L F NK D Sbjct: 81 EHYYKEGQAIIFVIDSSDRLR-MVVAKEELDTLLNHPDIKHRRIPILFFANKMD 133
>ARL6_HUMAN (Q9H0F7) ADP-ribosylation factor-like protein 6 (Bardet-Biedl| syndrome 3 protein) Length = 186 Score = 34.7 bits (78), Expect = 0.26 Identities = 17/54 (31%), Positives = 28/54 (51%) Frame = -2 Query: 655 DEFLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTD 494 + + ++FV+D+ D L M A E L +L + +R+P+L F NK D Sbjct: 81 EHYYKEGQAIIFVIDSSDRLR-MVVAKEELDTLLNHPDIKHRRIPILFFANKMD 133
>SAR1B_MOUSE (Q9CQC9) GTP-binding protein SAR1b| Length = 198 Score = 33.9 bits (76), Expect = 0.44 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Frame = -2 Query: 649 FLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSK- 473 +LP G+VF+VD D +++ E L ++ T+ VP+LI NK D+ A S+ Sbjct: 89 YLPAINGIVFLVDCADHERLLESKEE-LDSLMTDETIA--NVPILILGNKIDRPEAISEE 145 Query: 472 ------GVHQEAAGKRS 440 G++ + GK S Sbjct: 146 RLREMFGLYGQTTGKGS 162
>SAR1B_HUMAN (Q9Y6B6) GTP-binding protein SAR1b (GTBPB)| Length = 198 Score = 33.9 bits (76), Expect = 0.44 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Frame = -2 Query: 649 FLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSK- 473 +LP G+VF+VD D +++ E L ++ T+ VP+LI NK D+ A S+ Sbjct: 89 YLPAINGIVFLVDCADHERLLESKEE-LDSLMTDETIA--NVPILILGNKIDRPEAISEE 145 Query: 472 ------GVHQEAAGKRS 440 G++ + GK S Sbjct: 146 RLREMFGLYGQTTGKGS 162
>SAR1B_CRIGR (Q9QVY3) GTP-binding protein SAR1b (Sar1) (GTBPB)| Length = 198 Score = 33.9 bits (76), Expect = 0.44 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 7/77 (9%) Frame = -2 Query: 649 FLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSK- 473 +LP G+VF+VD D +++ E L ++ T+ VP+LI NK D+ A S+ Sbjct: 89 YLPAINGIVFLVDCADHERLLESKEE-LDSLMTDETIA--NVPILILGNKIDRPEAISEE 145 Query: 472 ------GVHQEAAGKRS 440 G++ + GK S Sbjct: 146 RLREMFGLYGQTTGKGS 162
>SAR1A_HUMAN (Q9NR31) GTP-binding protein SAR1a (COPII-associated small GTPase)| Length = 198 Score = 33.9 bits (76), Expect = 0.44 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = -2 Query: 649 FLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSKG 470 +LP G+VF+VD D +++ E L ++ T+ VP+LI NK D+ A S+ Sbjct: 89 YLPAINGIVFLVDCADHSRLVESKVE-LNALMTDETI--SNVPILILGNKIDRTDAISEE 145 Query: 469 VHQEAAG 449 +E G Sbjct: 146 KLREIFG 152
>ARL6_MOUSE (O88848) ADP-ribosylation factor-like protein 6| Length = 186 Score = 33.9 bits (76), Expect = 0.44 Identities = 17/45 (37%), Positives = 26/45 (57%) Frame = -2 Query: 628 VVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTD 494 ++FV+D+ D L M A E L +L + +R+P+L F NK D Sbjct: 90 IIFVIDSSDKLR-MVVAKEELDTLLNHPDIKHRRIPILFFANKMD 133
>SRPB_YEAST (P36057) Signal recognition particle receptor beta subunit| (SR-beta) Length = 244 Score = 32.3 bits (72), Expect = 1.3 Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%) Frame = -2 Query: 631 GVVFVVDAQDFLSSMQAAAEYLYDILA-KATVVKKRVPVLIFCNKTDKVTA 482 G++F+VD+ + AE+L DIL+ + + + +LI CNK++ TA Sbjct: 111 GLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 161
>Y1126_METJA (Q58526) Hypothetical GTP-binding protein MJ1126| Length = 402 Score = 32.0 bits (71), Expect = 1.7 Identities = 15/52 (28%), Positives = 29/52 (55%) Frame = -2 Query: 628 VVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSK 473 ++ VVDA D + ++ + ++IL+K + + P++ NK DK+T K Sbjct: 262 ILIVVDASDDIEEIKRKLKVNHEILSK---INCKAPIITVFNKVDKITKEKK 310
>LY75_MESAU (Q920P9) Lymphocyte antigen 75 precursor (DEC-205) (CD205 antigen)| Length = 1722 Score = 31.6 bits (70), Expect = 2.2 Identities = 12/39 (30%), Positives = 24/39 (61%) Frame = +2 Query: 539 HSSLCQNVIQVLCSSLHARQEILSINNKNNSSCPRQELI 655 H ++ Q + LC LH++ +ILSI N+ ++ ++L+ Sbjct: 1265 HRTITQKEVHSLCQKLHSKAQILSIRNEEENNFVVEQLL 1303
>DAPK3_HUMAN (O43293) Death-associated protein kinase 3 (EC 2.7.11.1) (DAP| kinase 3) (DAP-like kinase) (Dlk) (ZIP-kinase) Length = 454 Score = 31.6 bits (70), Expect = 2.2 Identities = 24/72 (33%), Positives = 39/72 (54%), Gaps = 9/72 (12%) Frame = -3 Query: 504 IKQTKLLLTRKEFIKKQLEKEVNKLRESR--NAISSADITDE-------IELGVPGEAFN 352 IK+ +L +R+ ++++E+EVN LRE R N I+ DI + +EL GE F+ Sbjct: 44 IKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFD 103 Query: 351 FSQCQNKVTVAE 316 F + +T E Sbjct: 104 FLAEKESLTEDE 115
>HXB5B_BRARE (P09013) Homeobox protein Hox-B5b (Hox-B5-like) (Zf-54)| Length = 276 Score = 30.8 bits (68), Expect = 3.7 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +1 Query: 37 VSSETCENIHVKTTNHVNQRQSGASSANRYTSTESAHPYPW 159 VSSET E TT+H +++S A+S ++ +PW Sbjct: 146 VSSETEEGAQTTTTSHTQKQESVATSTTTPNDGQTPQIFPW 186
>ARL3_CAEEL (O45379) ADP-ribosylation factor-like protein 3| Length = 184 Score = 30.0 bits (66), Expect = 6.3 Identities = 20/51 (39%), Positives = 31/51 (60%) Frame = -2 Query: 628 VVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHS 476 ++FV+D+ D + E L ++L + + ++VPVLIF NK D VTA S Sbjct: 89 LIFVIDSNDKKRFDEMNIE-LGELLDEEKL--RKVPVLIFANKQDLVTAAS 136
>SYI_SYNEL (Q8DGI7) Isoleucyl-tRNA synthetase (EC 6.1.1.5) (Isoleucine--tRNA| ligase) (IleRS) Length = 953 Score = 29.6 bits (65), Expect = 8.3 Identities = 9/22 (40%), Positives = 14/22 (63%) Frame = -2 Query: 334 QGDSC*RCWSHRQCFSSRAIHP 269 QG+ C RCW++ + A+HP Sbjct: 918 QGEKCVRCWNYSESVGQSALHP 939
>DAPK3_RAT (O88764) Death-associated protein kinase 3 (EC 2.7.11.1) (DAP| kinase 3) (DAP-like kinase) (Dlk) (ZIP-kinase) Length = 448 Score = 29.6 bits (65), Expect = 8.3 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 11/84 (13%) Frame = -3 Query: 534 RKGFLFLYSA--IKQTKLLLTRKEFIKKQLEKEVNKLRESR--NAISSADITDE------ 385 +KG Y+A IK+ +L +R+ ++++E+EV+ LRE R N I+ D+ + Sbjct: 32 QKGTGMEYAAKFIKKRRLPSSRRGVSREEIEREVSILREIRHPNIITLHDVFENKTDVVL 91 Query: 384 -IELGVPGEAFNFSQCQNKVTVAE 316 +EL GE F+F + +T E Sbjct: 92 ILELVSGGELFDFLAEKESLTEDE 115
>DAPK3_MOUSE (O54784) Death-associated protein kinase 3 (EC 2.7.11.1) (DAP| kinase 3) (DAP-like kinase) (Dlk) (ZIP-kinase) Length = 448 Score = 29.6 bits (65), Expect = 8.3 Identities = 26/84 (30%), Positives = 45/84 (53%), Gaps = 11/84 (13%) Frame = -3 Query: 534 RKGFLFLYSA--IKQTKLLLTRKEFIKKQLEKEVNKLRESR--NAISSADITDE------ 385 +KG Y+A IK+ +L +R+ ++++E+EV+ LRE R N I+ D+ + Sbjct: 32 QKGTGMEYAAKFIKKRRLPSSRRGVSREEIEREVSILREIRHPNIITLHDVFENKTDVVL 91 Query: 384 -IELGVPGEAFNFSQCQNKVTVAE 316 +EL GE F+F + +T E Sbjct: 92 ILELVSGGELFDFLAEKESLTEDE 115
>SAR1_YEAST (P20606) GTP-binding protein SAR1| Length = 190 Score = 29.6 bits (65), Expect = 8.3 Identities = 23/68 (33%), Positives = 32/68 (47%) Frame = -2 Query: 652 EFLPRAAGVVFVVDAQDFLSSMQAAAEYLYDILAKATVVKKRVPVLIFCNKTDKVTAHSK 473 ++ P G+VF+VDA D +A E D L +K VP +I NK D A S+ Sbjct: 86 DYFPEVNGIVFLVDAADPERFDEARVE--LDALFNIAELKD-VPFVILGNKIDAPNAVSE 142 Query: 472 GVHQEAAG 449 + A G Sbjct: 143 AELRSALG 150 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 82,720,962 Number of Sequences: 219361 Number of extensions: 1545385 Number of successful extensions: 4899 Number of sequences better than 10.0: 22 Number of HSP's better than 10.0 without gapping: 4769 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4897 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6257125380 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
