ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4o20
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK066580.1| Oryza sativa (japonica cultivar-group) cDNA clon... 365 1e-97
2gb|AY107874.1| Zea mays PCO128166 mRNA sequence 313 3e-82
3dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 192 8e-46
4dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic D... 192 8e-46
5gb|BT019046.1| Zea mays clone Contig567.F mRNA sequence 135 2e-28
6ref|NM_183920.1| Oryza sativa (japonica cultivar-group), predic... 117 4e-23
7ref|NM_180073.2| Arabidopsis thaliana unknown protein AT2G43945 ... 86 1e-13
8gb|BT004247.1| Arabidopsis thaliana clone RAFL14-92-M04 (R20229)... 86 1e-13
9gb|AY085084.1| Arabidopsis thaliana clone 12735 mRNA, complete s... 72 2e-09
10ref|NM_115850.2| Arabidopsis thaliana unknown protein AT3G59870 ... 70 8e-09
11emb|BX821915.1|CNS0A99L Arabidopsis thaliana Full-length cDNA Co... 66 1e-07
12emb|BX822285.1|CNS0A73T Arabidopsis thaliana Full-length cDNA Co... 64 5e-07
13gb|AC004005.3| Arabidopsis thaliana chromosome 2 clone F6E13 map... 60 8e-06
14emb|AL138647.1|ATF24G16 Arabidopsis thaliana DNA chromosome 3, B... 46 0.12
15gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, co... 46 0.12
16emb|BX824770.1|CNS0A6RG Arabidopsis thaliana Full-length cDNA Co... 46 0.12
17gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128... 46 0.12
18gb|AC108321.5| Rattus norvegicus BAC CH230-261E4 (Children's Hos... 44 0.46
19emb|Z78066.1|CEW06A7 Caenorhabditis elegans Cosmid W06A7, comple... 44 0.46
20ref|XM_730818.1| Plasmodium chabaudi chabaudi hypothetical prote... 44 0.46
21emb|AJ969684.1| Xyrodromeus sartorii mitochondrial partial 12S r... 44 0.46
22emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, ... 44 0.46
23emb|AL031804.1|ATF26P21 Arabidopsis thaliana DNA chromosome 4, B... 44 0.46
24gb|AC125327.4| Mus musculus BAC clone RP23-346B17 from chromosom... 42 1.8
25gb|AC127598.3| Mus musculus BAC clone RP23-84E16 from 7, complet... 42 1.8
26emb|AL450333.13| Human DNA sequence from clone RP11-25O6 on chro... 42 1.8
27gb|AC153818.5| Mus musculus 6 BAC RP23-345F4 (Roswell Park Cance... 42 1.8
28gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome... 42 1.8
29gb|AC153962.3| Mus musculus 10 BAC RP24-347C6 (Roswell Park Canc... 42 1.8
30gb|AC153961.2| Mus musculus 10 BAC RP24-330I16 (Roswell Park Can... 42 1.8
31ref|XM_632338.1| Dictyostelium discoideum hypothetical protein (... 40 7.2
32ref|XM_635154.1| Dictyostelium discoideum hypothetical protein (... 40 7.2
33gb|AC136746.15| Mus musculus chromosome 5, clone RP23-151C5, com... 40 7.2
34ref|XM_456717.1| Debaryomyces hansenii CBS767 hypothetical prote... 40 7.2
35gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, comp... 40 7.2
36gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome ... 40 7.2
37gb|AC147784.3| Canis Familiaris, clone XX-25F3, complete sequence 40 7.2
38gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome... 40 7.2
39gb|AC164158.3| Mus musculus BAC clone RP24-263G24 from chromosom... 40 7.2
40emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chr... 40 7.2
41emb|AL356423.15| Human DNA sequence from clone RP11-295B17 on ch... 40 7.2
42emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N... 40 7.2
43gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hosp... 40 7.2
44emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS... 40 7.2
45gb|AC022029.7| Homo sapiens chromosome 10 clone RP11-93L14, comp... 40 7.2
46gb|AC072051.8| Homo sapiens chromosome , clone RP11-79D21, compl... 40 7.2
47gb|AC115014.6| Mus musculus chromosome 3, clone RP24-196G4, comp... 40 7.2
48emb|BX088690.9| Zebrafish DNA sequence from clone CH211-211A20 i... 40 7.2
49gb|AC095349.10| Homo sapiens 3 BAC RP11-714D16 (Roswell Park Can... 40 7.2
50gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosom... 40 7.2
51gb|AC009802.13|AC009802 Homo sapiens chromosome 18, clone RP11-7... 40 7.2
52emb|BX890618.14| Zebrafish DNA sequence from clone DKEYP-18A5 in... 40 7.2
53gb|AY912140.1| Bubalus bubalis microsatellite BBMS260 sequence 40 7.2
54gb|AC171017.3| Gallus gallus BAC clone CH261-1F11 from chromosom... 40 7.2
55gb|AC140932.1| Gallus gallus BAC clone TAM31-60A24 from chromoso... 40 7.2
56emb|AJ249389.1|MSE249389 Manduca sexta mRNA for vacuolar ATPase ... 40 7.2 
>dbj|AK066580.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013069G24, full
            insert sequence
          Length = 1364

 Score =  365 bits (184), Expect = 1e-97
 Identities = 265/292 (90%)
 Strand = Plus / Minus

                                                                        
Query: 242  agctaatccaagtagaagagcgttacgatcttccgcatgttctttgcctcctggcaggtc 301
            ||||||||||||||||| || |||||||||||||| |  ||||| |||||||||||||||
Sbjct: 1082 agctaatccaagtagaatagggttacgatcttccggaaattcttggcctcctggcaggtc 1023

                                                                        
Query: 302  tccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgagatg 361
            |||||||||||| |||||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 1022 tccatcagcagcttgctgtcatggaatgcaaaacaaatcacctgttggaccttcgagatg 963

                                                                        
Query: 362  atgtccatgttgcataacctgctagcctcaattagtggtagatggtcatactgaggtttc 421
            ||||||||||||||||||||||| || ||||||||||| | ||||||||| ||||| |||
Sbjct: 962  atgtccatgttgcataacctgctcgcttcaattagtggcaaatggtcatattgaggcttc 903

                                                                        
Query: 422  tcaatcaagttttgtactttagataatagctcttggctttcaggaggttgcttctttaga 481
            ||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 902  tcaattaagttttgtactttagataaaagctcttgactttcaggaggttgcttctttaga 843

                                                                
Query: 482  ctttgaggcaaaattacggtaagcaattctggcttctcagctctcaaagcac 533
            |||||||| |||||||| || ||||| |||||||| ||||| || |||||||
Sbjct: 842  ctttgaggtaaaattacagtgagcaactctggcttttcagcccttaaagcac 791



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 53   agacatatcgacaagcttatttggttt 79
            |||||||||||||||||||||||||||
Sbjct: 1270 agacatatcgacaagcttatttggttt 1244
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>gb|AY107874.1| Zea mays PCO128166 mRNA sequence
          Length = 1346

 Score =  313 bits (158), Expect = 3e-82
 Identities = 257/290 (88%)
 Strand = Plus / Minus

                                                                        
Query: 242  agctaatccaagtagaagagcgttacgatcttccgcatgttctttgcctcctggcaggtc 301
            |||||||||||||||||||| || ||||||||||| | |||| | ||||||||||| || 
Sbjct: 1030 agctaatccaagtagaagagtgtcacgatcttccgaaggttcatggcctcctggcatgtt 971

                                                                        
Query: 302  tccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgagatg 361
            |||||||||||  ||||||| || ||||| ||||| || |||||||||||||| ||||||
Sbjct: 970  tccatcagcagtttgctgtcgtggaacgcgaagcagattacctgttggaccttagagatg 911

                                                                        
Query: 362  atgtccatgttgcataacctgctagcctcaattagtggtagatggtcatactgaggtttc 421
            |||||||| ||||||||||||||||||||||||||||| | ||| |||||||| ||||||
Sbjct: 910  atgtccatattgcataacctgctagcctcaattagtggcaaatgatcatactgtggtttc 851

                                                                        
Query: 422  tcaatcaagttttgtactttagataatagctcttggctttcaggaggttgcttctttaga 481
            || |  ||||||||||||||||| || || ||||||||||||||||| ||||||||||||
Sbjct: 850  tcgagtaagttttgtactttagacaacagttcttggctttcaggaggctgcttctttaga 791

                                                              
Query: 482  ctttgaggcaaaattacggtaagcaattctggcttctcagctctcaaagc 531
            |||||||| |||||||| |||||||| |||||||| |||||||| |||||
Sbjct: 790  ctttgaggtaaaattacagtaagcaactctggcttttcagctcttaaagc 741
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  192 bits (97), Expect = 8e-46
 Identities = 130/141 (92%)
 Strand = Plus / Plus

                                                                            
Query: 242      agctaatccaagtagaagagcgttacgatcttccgcatgttctttgcctcctggcaggtc 301
                ||||||||||||||||| || |||||||||||||| |  ||||| |||||||||||||||
Sbjct: 13302456 agctaatccaagtagaatagggttacgatcttccggagattcttggcctcctggcaggtc 13302515

                                                                            
Query: 302      tccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgagatg 361
                |||||||||||| |||||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 13302516 tccatcagcagcttgctgtcatggaatgcaaaacaaatcacctgttggaccttcgagatg 13302575

                                     
Query: 362      atgtccatgttgcataacctg 382
                |||||||||||||||||||||
Sbjct: 13302576 atgtccatgttgcataacctg 13302596



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                            
Query: 436      tactttagataatagctcttggctttcaggaggttgcttctttagactttgaggcaaaat 495
                |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 13303981 tactttagataaaagctcttgactttcaggaggttgcttctttagactttgaggtaaaat 13304040

                                                      
Query: 496      tacggtaagcaattctggcttctcagctctcaaagcac 533
                ||| || ||||| |||||||| ||||| || |||||||
Sbjct: 13304041 tacagtgagcaactctggcttttcagcccttaaagcac 13304078



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                            
Query: 378      acctgctagcctcaattagtggtagatggtcatactgaggtttctcaatcaagttttgta 437
                ||||||| || ||||||||||| | ||||||||| ||||| |||||||| ||||||||||
Sbjct: 13303080 acctgctcgcttcaattagtggcaaatggtcatattgaggcttctcaattaagttttgta 13303139

                 
Query: 438      c 438
                |
Sbjct: 13303140 c 13303140



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                           
Query: 53       agacatatcgacaagcttatttggttt 79
                |||||||||||||||||||||||||||
Sbjct: 13302268 agacatatcgacaagcttatttggttt 13302294
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>dbj|AP003331.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1088D01
          Length = 146144

 Score =  192 bits (97), Expect = 8e-46
 Identities = 130/141 (92%)
 Strand = Plus / Plus

                                                                         
Query: 242   agctaatccaagtagaagagcgttacgatcttccgcatgttctttgcctcctggcaggtc 301
             ||||||||||||||||| || |||||||||||||| |  ||||| |||||||||||||||
Sbjct: 42814 agctaatccaagtagaatagggttacgatcttccggagattcttggcctcctggcaggtc 42873

                                                                         
Query: 302   tccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgagatg 361
             |||||||||||| |||||||||| || ||||| || ||||||||||||||||||||||||
Sbjct: 42874 tccatcagcagcttgctgtcatggaatgcaaaacaaatcacctgttggaccttcgagatg 42933

                                  
Query: 362   atgtccatgttgcataacctg 382
             |||||||||||||||||||||
Sbjct: 42934 atgtccatgttgcataacctg 42954



 Score =  123 bits (62), Expect = 6e-25
 Identities = 89/98 (90%)
 Strand = Plus / Plus

                                                                         
Query: 436   tactttagataatagctcttggctttcaggaggttgcttctttagactttgaggcaaaat 495
             |||||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 44339 tactttagataaaagctcttgactttcaggaggttgcttctttagactttgaggtaaaat 44398

                                                   
Query: 496   tacggtaagcaattctggcttctcagctctcaaagcac 533
             ||| || ||||| |||||||| ||||| || |||||||
Sbjct: 44399 tacagtgagcaactctggcttttcagcccttaaagcac 44436



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 54/61 (88%)
 Strand = Plus / Plus

                                                                         
Query: 378   acctgctagcctcaattagtggtagatggtcatactgaggtttctcaatcaagttttgta 437
             ||||||| || ||||||||||| | ||||||||| ||||| |||||||| ||||||||||
Sbjct: 43438 acctgctcgcttcaattagtggcaaatggtcatattgaggcttctcaattaagttttgta 43497

              
Query: 438   c 438
             |
Sbjct: 43498 c 43498



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                        
Query: 53    agacatatcgacaagcttatttggttt 79
             |||||||||||||||||||||||||||
Sbjct: 42626 agacatatcgacaagcttatttggttt 42652
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>gb|BT019046.1| Zea mays clone Contig567.F mRNA sequence
          Length = 822

 Score =  135 bits (68), Expect = 2e-28
 Identities = 95/104 (91%)
 Strand = Plus / Plus

                                                                       
Query: 428 aagttttgtactttagataatagctcttggctttcaggaggttgcttctttagactttga 487
           ||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||||
Sbjct: 2   aagttttgtactttagacaacagttcttggctttcaggaggctgcttctttagactttga 61

                                                       
Query: 488 ggcaaaattacggtaagcaattctggcttctcagctctcaaagc 531
           || |||||||| |||||||| |||||||| |||||||| |||||
Sbjct: 62  ggtaaaattacagtaagcaactctggcttttcagctcttaaagc 105
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>ref|NM_183920.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 666

 Score =  117 bits (59), Expect = 4e-23
 Identities = 86/95 (90%)
 Strand = Plus / Minus

                                                                       
Query: 439 tttagataatagctcttggctttcaggaggttgcttctttagactttgaggcaaaattac 498
           ||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct: 549 tttagataaaagctcttgactttcaggaggttgcttctttagactttgaggtaaaattac 490

                                              
Query: 499 ggtaagcaattctggcttctcagctctcaaagcac 533
            || ||||| |||||||| ||||| || |||||||
Sbjct: 489 agtgagcaactctggcttttcagcccttaaagcac 455
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>ref|NM_180073.2| Arabidopsis thaliana unknown protein AT2G43945 mRNA, complete cds
          Length = 1141

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 187/235 (79%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtctccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgag 358
           |||||||| || ||| | |||||||||||||| ||||| ||||| ||||| || |  || 
Sbjct: 972 gtctccataagaagcttactgtcatgaaacgcgaagcagatcacttgttgaacttgtgat 913

                                                                       
Query: 359 atgatgtccatgttgcataacctgctagcctcaattagtggtagatggtcatactgaggt 418
           ||||||||||| || || |||||||| || || |  | ||| | ||||||||  || || 
Sbjct: 912 atgatgtccatattacacaacctgctggcttctaacaatggcaaatggtcattatgtggc 853

                                                                       
Query: 419 ttctcaatcaagttttgtactttagataatagctcttggctttcaggaggttgcttcttt 478
           || || | || ||||||||||||||| ||||| |||||||| ||||||||||| || || 
Sbjct: 852 ttttctaccacgttttgtactttagacaatagttcttggctctcaggaggttgttttttc 793

                                                                  
Query: 479 agactttgaggcaaaattacggtaagcaattctggcttctcagctctcaaagcac 533
           | |||||| || | |||||| |||||||  |||||  |||| |||||||| ||||
Sbjct: 792 aaactttggggtagaattactgtaagcagctctggtctctctgctctcaatgcac 738
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>gb|BT004247.1| Arabidopsis thaliana clone RAFL14-92-M04 (R20229) unknown protein
           (At2g43940) mRNA, complete cds
          Length = 1096

 Score = 85.7 bits (43), Expect = 1e-13
 Identities = 187/235 (79%)
 Strand = Plus / Minus

                                                                       
Query: 299 gtctccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgag 358
           |||||||| || ||| | |||||||||||||| ||||| ||||| ||||| || |  || 
Sbjct: 904 gtctccataagaagcttactgtcatgaaacgcgaagcagatcacttgttgaacttgtgat 845

                                                                       
Query: 359 atgatgtccatgttgcataacctgctagcctcaattagtggtagatggtcatactgaggt 418
           ||||||||||| || || |||||||| || || |  | ||| | ||||||||  || || 
Sbjct: 844 atgatgtccatattacacaacctgctggcttctaacaatggcaaatggtcattatgtggc 785

                                                                       
Query: 419 ttctcaatcaagttttgtactttagataatagctcttggctttcaggaggttgcttcttt 478
           || || | || ||||||||||||||| ||||| |||||||| ||||||||||| || || 
Sbjct: 784 ttttctaccacgttttgtactttagacaatagttcttggctctcaggaggttgttttttc 725

                                                                  
Query: 479 agactttgaggcaaaattacggtaagcaattctggcttctcagctctcaaagcac 533
           | |||||| || | |||||| |||||||  |||||  |||| |||||||| ||||
Sbjct: 724 aaactttggggtagaattactgtaagcagctctggtctctctgctctcaatgcac 670
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>gb|AY085084.1| Arabidopsis thaliana clone 12735 mRNA, complete sequence
          Length = 1219

 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 192/244 (78%)
 Strand = Plus / Minus

                                                                        
Query: 246  aatccaagtagaagagcgttacgatcttccgcatgttctttgcctcctggcaggtctcca 305
            |||||| ||||||||| || || |||||||| |  || || || || || || |||||||
Sbjct: 1054 aatccaggtagaagagggtaacaatcttccggagatttttagcttcttgacatgtctcca 995

                                                                        
Query: 306  tcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgagatgatgt 365
            | || ||| | || ||||||||||||||||| || |  ||||| || |  || ||||| |
Sbjct: 994  tgagaagcttactatcatgaaacgcaaagcaaatgatttgttgcacttgtgatatgatat 935

                                                                        
Query: 366  ccatgttgcataacctgctagcctcaattagtggtagatggtcatactgaggtttctcaa 425
            ||||||| |||| |||||| || || | ||  |||| |||||| |  ||||| || || |
Sbjct: 934  ccatgttacatagcctgctggcttctaataacggtaaatggtcgttgtgaggcttttcta 875

                                                                        
Query: 426  tcaagttttgtactttagataatagctcttggctttcaggaggttgcttctttagacttt 485
            ||| |||||||||||| || | ||| || |||||||||||||||||||| || | |||||
Sbjct: 874  tcacgttttgtacttttgacagtagttcctggctttcaggaggttgctttttcaaacttt 815

                
Query: 486  gagg 489
            ||||
Sbjct: 814  gagg 811
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>ref|NM_115850.2| Arabidopsis thaliana unknown protein AT3G59870 mRNA, complete cds
          Length = 1256

 Score = 69.9 bits (35), Expect = 8e-09
 Identities = 152/191 (79%)
 Strand = Plus / Minus

                                                                        
Query: 299  gtctccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgag 358
            |||||||| || ||| | || ||||||||||||||||| || |  ||||| || |  || 
Sbjct: 1001 gtctccatgagaagcttactatcatgaaacgcaaagcaaatgatttgttgcacttgtgat 942

                                                                        
Query: 359  atgatgtccatgttgcataacctgctagcctcaattagtggtagatggtcatactgaggt 418
            ||||| |||||||| |||| |||||| || || | ||  |||| |||||| |  ||||| 
Sbjct: 941  atgatatccatgttacatagcctgctggcttctaataacggtaaatggtcgttgtgaggc 882

                                                                        
Query: 419  ttctcaatcaagttttgtactttagataatagctcttggctttcaggaggttgcttcttt 478
            || || |||| |||||||||||| || | ||| || |||||||||||||||||||| || 
Sbjct: 881  ttttctatcacgttttgtacttttgacagtagttcctggctttcaggaggttgctttttc 822

                       
Query: 479  agactttgagg 489
            | |||||||||
Sbjct: 821  aaactttgagg 811
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>emb|BX821915.1|CNS0A99L Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL84ZD03 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 830

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 66/77 (85%)
 Strand = Plus / Minus

                                                                       
Query: 430 gttttgtactttagataatagctcttggctttcaggaggttgcttctttagactttgagg 489
           ||||||||||||||| ||||| |||||||| ||||||||||| || || | |||||| ||
Sbjct: 526 gttttgtactttagacaatagttcttggctctcaggaggttgttttttcaaactttgggg 467

                            
Query: 490 caaaattacggtaagca 506
            | |||||| |||||||
Sbjct: 466 tagaattactgtaagca 450
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>emb|BX822285.1|CNS0A73T Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB26ZD03 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 1171

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 68/80 (85%)
 Strand = Plus / Minus

                                                                       
Query: 425 atcaagttttgtactttagataatagctcttggctttcaggaggttgcttctttagactt 484
           |||| |||||||||||| || | ||| || |||||||||||||||||||| || | ||||
Sbjct: 827 atcacgttttgtacttttgacagtagttcctggctttcaggaggttgctttttcaaactt 768

                               
Query: 485 tgaggcaaaattacggtaag 504
           ||||| ||||| || |||||
Sbjct: 767 tgaggtaaaataactgtaag 748
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>gb|AC004005.3| Arabidopsis thaliana chromosome 2 clone F6E13 map CIC10F02, CIC02E07,
             complete sequence
          Length = 109741

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 81/98 (82%)
 Strand = Plus / Plus

                                                                         
Query: 436   tactttagataatagctcttggctttcaggaggttgcttctttagactttgaggcaaaat 495
             ||||||||| ||||| |||||||| ||||||||||| || || | |||||| || | |||
Sbjct: 28632 tactttagacaatagttcttggctctcaggaggttgttttttcaaactttggggtagaat 28691

                                                   
Query: 496   tacggtaagcaattctggcttctcagctctcaaagcac 533
             ||| |||||||  |||||  |||| |||||||| ||||
Sbjct: 28692 tactgtaagcagctctggtctctctgctctcaatgcac 28729



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 70/85 (82%)
 Strand = Plus / Plus

                                                                         
Query: 299   gtctccatcagcagcctgctgtcatgaaacgcaaagcatatcacctgttggaccttcgag 358
             |||||||| || ||| | |||||||||||||| ||||| ||||| ||||| || |  || 
Sbjct: 28317 gtctccataagaagcttactgtcatgaaacgcgaagcagatcacttgttgaacttgtgat 28376

                                      
Query: 359   atgatgtccatgttgcataacctgc 383
             ||||||||||| || || |||||||
Sbjct: 28377 atgatgtccatattacacaacctgc 28401
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>emb|AL138647.1|ATF24G16 Arabidopsis thaliana DNA chromosome 3, BAC clone F24G16
          Length = 100906

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Plus

                                                
Query: 455   tggctttcaggaggttgcttctttagactttgagg 489
             |||||||||||||||||||| || | |||||||||
Sbjct: 49687 tggctttcaggaggttgctttttcaaactttgagg 49721
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>gb|AC067819.10| Homo sapiens chromosome 18, clone RP11-585K6, complete sequence
          Length = 216972

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 7      aattactaatgataagaatttgaatta 33
              ||||||||||||||||||| |||||||
Sbjct: 212134 aattactaatgataagaatatgaatta 212108
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>emb|BX824770.1|CNS0A6RG Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH70ZD07 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1674

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 32/35 (91%)
 Strand = Plus / Minus

                                               
Query: 455  tggctttcaggaggttgcttctttagactttgagg 489
            |||||||||||||||||||| || | |||||||||
Sbjct: 1155 tggctttcaggaggttgctttttcaaactttgagg 1121
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>gb|AC005909.1|AC005909 Homo sapiens chromosome 18 BAC RPCI11-128D14 (Roswell Park Cancer
             Institute Human BAC Library) complete sequence
          Length = 137557

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 7     aattactaatgataagaatttgaatta 33
             ||||||||||||||||||| |||||||
Sbjct: 76590 aattactaatgataagaatatgaatta 76564
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>gb|AC108321.5| Rattus norvegicus BAC CH230-261E4 (Children's Hospital Oakland Research
             Institute) complete sequence
          Length = 196424

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 298   ggtctccatcagcagcctgctgtcatgaaa 327
             ||||||||||||||| |||||||| |||||
Sbjct: 23232 ggtctccatcagcagtctgctgtcctgaaa 23203
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>emb|Z78066.1|CEW06A7 Caenorhabditis elegans Cosmid W06A7, complete sequence
          Length = 27243

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 20    aagaatttgaattattttcttt 41
             ||||||||||||||||||||||
Sbjct: 18739 aagaatttgaattattttcttt 18718
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>ref|XM_730818.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000597.00.0)
          partial mRNA
          Length = 741

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                
Query: 20 aagaatttgaattattttcttt 41
          ||||||||||||||||||||||
Sbjct: 70 aagaatttgaattattttcttt 49
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>emb|AJ969684.1| Xyrodromeus sartorii mitochondrial partial 12S rRNA gene for 12S
           ribosomal RNA, strain BMNH 704076
          Length = 336

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                     
Query: 15  atgataagaatttgaattattttctt 40
           ||||||| ||||||||||||||||||
Sbjct: 152 atgataataatttgaattattttctt 177
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>emb|AL161582.2|ATCHRIV78 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 78
          Length = 198669

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 2      tttgaaattactaatgataagaatttgaat 31
              |||| |||||||||||||| ||||||||||
Sbjct: 108834 tttggaattactaatgatatgaatttgaat 108805
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>emb|AL031804.1|ATF26P21 Arabidopsis thaliana DNA chromosome 4, BAC clone F26P21 (ESSA project)
          Length = 94482

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                           
Query: 2     tttgaaattactaatgataagaatttgaat 31
             |||| |||||||||||||| ||||||||||
Sbjct: 18138 tttggaattactaatgatatgaatttgaat 18109
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>gb|AC125327.4| Mus musculus BAC clone RP23-346B17 from chromosome 6, complete sequence
          Length = 224846

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 501    taagcaattctggcttctcag 521
              |||||||||||||||||||||
Sbjct: 224603 taagcaattctggcttctcag 224623
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>gb|AC127598.3| Mus musculus BAC clone RP23-84E16 from 7, complete sequence
          Length = 186752

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 295    gcaggtctccatcagcagcct 315
              |||||||||||||||||||||
Sbjct: 180266 gcaggtctccatcagcagcct 180286
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>emb|AL450333.13| Human DNA sequence from clone RP11-25O6 on chromosome 6, complete
             sequence
          Length = 156964

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 439   tttagataatagctcttggctttca 463
             ||||||||||||||||| |||||||
Sbjct: 14010 tttagataatagctcttagctttca 13986
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>gb|AC153818.5| Mus musculus 6 BAC RP23-345F4 (Roswell Park Cancer Institute (C57BL/6J
              Female) Mouse BAC Library) complete sequence
          Length = 193079

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 501    taagcaattctggcttctcag 521
              |||||||||||||||||||||
Sbjct: 109725 taagcaattctggcttctcag 109705
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>gb|AC127287.4| Mus musculus BAC clone RP23-345G7 from chromosome 7, complete sequence
          Length = 209901

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 295    gcaggtctccatcagcagcct 315
              |||||||||||||||||||||
Sbjct: 201923 gcaggtctccatcagcagcct 201903
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>gb|AC153962.3| Mus musculus 10 BAC RP24-347C6 (Roswell Park Cancer Institute (C57BL/6J
              Male) Mouse BAC Library) complete sequence
          Length = 147491

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 7      aattactaatgataagaattt 27
              |||||||||||||||||||||
Sbjct: 145674 aattactaatgataagaattt 145694
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>gb|AC153961.2| Mus musculus 10 BAC RP24-330I16 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 159792

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 7     aattactaatgataagaattt 27
             |||||||||||||||||||||
Sbjct: 18218 aattactaatgataagaattt 18238
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>ref|XM_632338.1| Dictyostelium discoideum hypothetical protein (DDB0218892), partial
            mRNA
          Length = 4734

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 17   gataagaatttgaattattt 36
            ||||||||||||||||||||
Sbjct: 2893 gataagaatttgaattattt 2874
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>ref|XM_635154.1| Dictyostelium discoideum hypothetical protein (DDB0204167), partial
           mRNA
          Length = 2364

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 23  aatttgaattattttcttta 42
           ||||||||||||||||||||
Sbjct: 325 aatttgaattattttcttta 306
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>gb|AC136746.15| Mus musculus chromosome 5, clone RP23-151C5, complete sequence
          Length = 195530

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 490   caaaattacggtaagcaatt 509
             ||||||||||||||||||||
Sbjct: 88010 caaaattacggtaagcaatt 87991
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>ref|XM_456717.1| Debaryomyces hansenii CBS767 hypothetical protein (DEHA0A09086g)
            partial mRNA
          Length = 2112

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 19   taagaatttgaattattttc 38
            ||||||||||||||||||||
Sbjct: 1643 taagaatttgaattattttc 1624
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>gb|AC165242.6| Mus musculus chromosome 3, clone RP24-98F15, complete sequence
          Length = 185876

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 385    agcctcaattagtggtagat 404
              ||||||||||||||||||||
Sbjct: 181943 agcctcaattagtggtagat 181924
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>gb|AC124475.3| Mus musculus BAC clone RP24-92F8 from chromosome 8, complete sequence
          Length = 212858

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 472   cttctttagactttgaggca 491
             ||||||||||||||||||||
Sbjct: 77613 cttctttagactttgaggca 77594
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>gb|AC147784.3| Canis Familiaris, clone XX-25F3, complete sequence
          Length = 176851

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 22    gaatttgaattattttcttt 41
             ||||||||||||||||||||
Sbjct: 53230 gaatttgaattattttcttt 53249
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>gb|AC138457.3| Mus musculus BAC clone RP23-358E1 from chromosome 19, complete sequence
          Length = 237854

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 89     atttgaataatgggcaaaat 108
              ||||||||||||||||||||
Sbjct: 137487 atttgaataatgggcaaaat 137468
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>gb|AC164158.3| Mus musculus BAC clone RP24-263G24 from chromosome 7, complete sequence
          Length = 200983

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 78     ttctaccaagaatttgaata 97
              ||||||||||||||||||||
Sbjct: 196066 ttctaccaagaatttgaata 196085
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>emb|AL589862.28| Human DNA sequence from clone GS1-165F21 on chromosome 10 Contains
            the 5' end of the PAX2 gene for paired box gene 2 and
            fifteen CpG islands, complete sequence
          Length = 187101

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   atttgaataatgggcaaaat 108
            ||||||||||||||||||||
Sbjct: 6436 atttgaataatgggcaaaat 6455
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>emb|AL356423.15| Human DNA sequence from clone RP11-295B17 on chromosome 13 Contains the
             5' end of the STK24 gene for serine/threonine kinase 24, a
             novel gene, a novel pseudogene, a cytochrome c pseudogene,
             a calmodulin 2 (CALM2) pseudogene and a CpG island,
             complete sequence
          Length = 174041

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 286   tgcctcctggcaggtctccatcagcagc 313
             |||||||||| ||| |||||||||||||
Sbjct: 26043 tgcctcctggaaggcctccatcagcagc 26070
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>emb|AL109915.10|HSDJ120N9 Human DNA sequence from clone RP1-120N9 on chromosome 6q13-15 Contains
             the SNAP91 gene for synaptosomal-associated protein, 91 kD
             homolog (mouse) (KIAA0656) and a CpG island, complete
             sequence
          Length = 167018

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 12    ctaatgataagaatttgaat 31
             ||||||||||||||||||||
Sbjct: 77322 ctaatgataagaatttgaat 77303
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>gb|AC103018.7| Rattus norvegicus 1 CH230-196F22 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 212568

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 89     atttgaataatgggcaaaat 108
              ||||||||||||||||||||
Sbjct: 129420 atttgaataatgggcaaaat 129439
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>emb|CR382133.1| Debaryomyces hansenii chromosome A of strain CBS767 of Debaryomyces
              hansenii
          Length = 1249565

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 19     taagaatttgaattattttc 38
              ||||||||||||||||||||
Sbjct: 736140 taagaatttgaattattttc 736121
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>gb|AC022029.7| Homo sapiens chromosome 10 clone RP11-93L14, complete sequence
          Length = 140040

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 23     aatttgaattattttcttta 42
              ||||||||||||||||||||
Sbjct: 112255 aatttgaattattttcttta 112236
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>gb|AC072051.8| Homo sapiens chromosome , clone RP11-79D21, complete sequence
          Length = 157284

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 18    ataagaatttgaattatttt 37
             ||||||||||||||||||||
Sbjct: 20075 ataagaatttgaattatttt 20056
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>gb|AC115014.6| Mus musculus chromosome 3, clone RP24-196G4, complete sequence
          Length = 169069

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 385   agcctcaattagtggtagat 404
             ||||||||||||||||||||
Sbjct: 87541 agcctcaattagtggtagat 87560
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>emb|BX088690.9| Zebrafish DNA sequence from clone CH211-211A20 in linkage group 18,
              complete sequence
          Length = 218713

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 400    tagatggtcatactgaggtt 419
              ||||||||||||||||||||
Sbjct: 210602 tagatggtcatactgaggtt 210583
to top
>gb|AC095349.10| Homo sapiens 3 BAC RP11-714D16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 182618

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 15    atgataagaatttgaattat 34
             ||||||||||||||||||||
Sbjct: 91032 atgataagaatttgaattat 91051
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>gb|AC134587.3| Mus musculus BAC clone RP23-306P12 from chromosome 7, complete sequence
          Length = 166576

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 78     ttctaccaagaatttgaata 97
              ||||||||||||||||||||
Sbjct: 105713 ttctaccaagaatttgaata 105694
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>gb|AC009802.13|AC009802 Homo sapiens chromosome 18, clone RP11-793J2, complete sequence
          Length = 191395

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     ataagaatttgaattatttt 37
              ||||||||||||||||||||
Sbjct: 157757 ataagaatttgaattatttt 157738
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>emb|BX890618.14| Zebrafish DNA sequence from clone DKEYP-18A5 in linkage group 18,
             complete sequence
          Length = 88593

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 400   tagatggtcatactgaggtt 419
             ||||||||||||||||||||
Sbjct: 85944 tagatggtcatactgaggtt 85925
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>gb|AY912140.1| Bubalus bubalis microsatellite BBMS260 sequence
          Length = 744

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 17  gataagaatttgaattattt 36
           ||||||||||||||||||||
Sbjct: 273 gataagaatttgaattattt 254
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>gb|AC171017.3| Gallus gallus BAC clone CH261-1F11 from chromosome ul, complete sequence
          Length = 189284

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 300    tctccatcagcagcctgctg 319
              ||||||||||||||||||||
Sbjct: 113712 tctccatcagcagcctgctg 113693
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>gb|AC140932.1| Gallus gallus BAC clone TAM31-60A24 from chromosome ul, complete
             sequence
          Length = 82966

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   ttttgtactttagataatag 450
             ||||||||||||||||||||
Sbjct: 21216 ttttgtactttagataatag 21197
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>emb|AJ249389.1|MSE249389 Manduca sexta mRNA for vacuolar ATPase subunit H (mvH gene)
          Length = 1922

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 413 tgaggtttctcaatcaagtt 432
           ||||||||||||||||||||
Sbjct: 883 tgaggtttctcaatcaagtt 864


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,921,497
Number of Sequences: 3902068
Number of extensions: 4921497
Number of successful extensions: 99099
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98928
Number of HSP's gapped (non-prelim): 168
length of query: 533
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 510
effective length of database: 17,143,297,704
effective search space: 8743081829040
effective search space used: 8743081829040
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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