ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5d19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DCHS_DROME (Q05733) Histidine decarboxylase (EC 4.1.1.22) (HDC) 28 6.4
2MUC15_MOUSE (Q8C6Z1) Mucin-15 precursor 28 8.4

>DCHS_DROME (Q05733) Histidine decarboxylase (EC 4.1.1.22) (HDC)|
          Length = 847

 Score = 28.1 bits (61), Expect = 6.4
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 21  HLHSSSSRSRACALQTHQQMHVLLLHLSKNNPNSS 125
           H HS S+ SR+C+  +H  +H     L++++P SS
Sbjct: 631 HAHSLSTPSRSCSSSSHSLIH----SLTQSSPRSS 661



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>MUC15_MOUSE (Q8C6Z1) Mucin-15 precursor|
          Length = 331

 Score = 27.7 bits (60), Expect = 8.4
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
 Frame = -3

Query: 207 WLLYSSAYQLRPSTA*IYDRVVTGFTGSCCLDCFWRDA----VVAHA------SADEFVE 58
           WL+ SS+   RPS+      +V GF     L+    DA    V  H+      S + F  
Sbjct: 89  WLMTSSSESSRPSSTYSVPPLVQGFVSKLPLNSSTADANPLQVSEHSNSTNSPSPENFTW 148

Query: 57  RMHESEKNYYEDVRTXVR 4
            +     N  ED+ T VR
Sbjct: 149 SLDNDTMNSPEDISTTVR 166


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 32,385,865
Number of Sequences: 219361
Number of extensions: 521231
Number of successful extensions: 1498
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1490
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1498
length of database: 80,573,946
effective HSP length: 51
effective length of database: 69,386,535
effective search space used: 1665276840
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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