ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5d18
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RP8L3_ARATH (Q9FJB5) Probable disease resistance RPP8-like prote... 40 0.005
2DRL13_ARATH (Q9XIF0) Putative disease resistance protein At1g59780 37 0.022
3RPP8_ARATH (Q8W4J9) Disease resistance protein RPP8 (Resistance ... 37 0.029
4RP8HA_ARATH (P59584) Disease resistance protein RPH8A (RPP8 homo... 37 0.029
5RP8L4_ARATH (Q9FJK8) Probable disease resistance RPP8-like prote... 33 0.32
6RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance ... 33 0.55
7RP8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like prote... 30 2.7
8ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic round... 30 3.6
9REPS2_MOUSE (Q80XA6) RalBP1-associated Eps domain-containing pro... 29 6.1

>RP8L3_ARATH (Q9FJB5) Probable disease resistance RPP8-like protein 3|
          Length = 901

 Score = 39.7 bits (91), Expect = 0.005
 Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 3/71 (4%)
 Frame = -1

Query: 430  DGALPCXEGLYVVSLSKLDKVPQGIESLSSLKKLWLVGLHGGFKTQWDKNGMQQ---KMV 260
            +G++PC   L + S  KL+++P G++ ++SLK+L + G+    K +W +  + +   K+ 
Sbjct: 830  EGSMPCLRDLIIHSCEKLEELPDGLKYVTSLKELKIEGM----KREWKEKLVGEDYYKVQ 885

Query: 259  HVQEVRV*NSE 227
            H+ +V+  N +
Sbjct: 886  HIPDVQFFNCD 896



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>DRL13_ARATH (Q9XIF0) Putative disease resistance protein At1g59780|
          Length = 906

 Score = 37.4 bits (85), Expect = 0.022
 Identities = 21/64 (32%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = -1

Query: 430  DGALPCXEGLYVVSLSKLDKVPQGIESLSSLKKLWLVGLHGGFKTQWDKNGMQ-QKMVHV 254
            +G++P    L++V   KL ++P G+  +SSLK+L +      F+ +  K G    KM HV
Sbjct: 822  EGSMPLLHTLHIVDCKKLKEIPDGLRFISSLKELAIRTNEKVFQKKVSKGGEDYYKMQHV 881

Query: 253  QEVR 242
              +R
Sbjct: 882  PLIR 885



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>RPP8_ARATH (Q8W4J9) Disease resistance protein RPP8 (Resistance to Peronospora|
            parasitica protein 8)
          Length = 908

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = -1

Query: 430  DGALPCXEGLYVVSLSKLDKVPQGIESLSSLKKLWLVGLHGGFKTQWDKNGMQ-QKMVHV 254
            +G++PC   L +    KL ++P G++ ++SLK+L + G+   +K +    G    K+ H+
Sbjct: 839  EGSMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHI 898

Query: 253  QEVRV*NSE 227
             +V+  N +
Sbjct: 899  PDVQFINCD 907



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>RP8HA_ARATH (P59584) Disease resistance protein RPH8A (RPP8 homolog A)|
          Length = 910

 Score = 37.0 bits (84), Expect = 0.029
 Identities = 19/69 (27%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
 Frame = -1

Query: 430  DGALPCXEGLYVVSLSKLDKVPQGIESLSSLKKLWLVGLHGGFKTQWDKNGMQ-QKMVHV 254
            +G++PC   L +    KL ++P G++ ++SLK+L + G+   +K +    G    K+ H+
Sbjct: 841  EGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHI 900

Query: 253  QEVRV*NSE 227
             +V+  N +
Sbjct: 901  PDVQFINCD 909



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>RP8L4_ARATH (Q9FJK8) Probable disease resistance RPP8-like protein 4|
          Length = 908

 Score = 33.5 bits (75), Expect = 0.32
 Identities = 18/69 (26%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
 Frame = -1

Query: 430  DGALPCXEGLYVVSLSKLDKVPQGIESLSSLKKLWLVGLHGGFKTQWDKNGMQ-QKMVHV 254
            +G++PC   L +    KL ++P G++ ++SLK+L +  +   +K +    G    K+ H+
Sbjct: 839  EGSMPCLRTLTIHDCEKLKELPDGLKYITSLKELKIREMKREWKEKLVPGGEDYYKVQHI 898

Query: 253  QEVRV*NSE 227
             +V+  N +
Sbjct: 899  PDVQFINCD 907



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>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas|
           syringae protein 3)
          Length = 926

 Score = 32.7 bits (73), Expect = 0.55
 Identities = 20/58 (34%), Positives = 33/58 (56%)
 Frame = -1

Query: 493 FXHXKSXTXKXMHNVNXXKIIDGALPCXEGLYVVSLSKLDKVPQGIESLSSLKKLWLV 320
           F + K      M ++    I DGA+   + LYV +   L+ VP+GIE+L +L++L L+
Sbjct: 825 FQNLKILEIVQMKHLTEVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLI 882



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>RP8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like protein 2|
          Length = 1271

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 11/37 (29%), Positives = 25/37 (67%)
 Frame = -1

Query: 439 KIIDGALPCXEGLYVVSLSKLDKVPQGIESLSSLKKL 329
           ++ +G++PC   L + +  KL ++P G++ ++ LK+L
Sbjct: 834 RVEEGSMPCLRTLTIDNCKKLKQLPDGLKYVTCLKEL 870



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>ROBO4_HUMAN (Q8WZ75) Roundabout homolog 4 precursor (Magic roundabout)|
          Length = 1007

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
 Frame = +1

Query: 229 QSFRHEPP--EHAPSSAAFRSCPTEF*SPHASPPTRASSGS*GIQCLEGPYPASTTTQHT 402
           QS + +PP    APSS    + P    SP + P  +ASS       L GP PAS+    +
Sbjct: 728 QSQQTQPPVAPQAPSSILLPAAPIPILSPCSPPSPQASS-------LSGPSPASSRLSSS 780

Query: 403 NL 408
           +L
Sbjct: 781 SL 782



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>REPS2_MOUSE (Q80XA6) RalBP1-associated Eps domain-containing protein 2|
           (RalBP1-interacting protein 2) (Partner of RalBP1)
          Length = 521

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +1

Query: 241 HEPPEHAPSSAAFRSCPTEF*SPHASPPTR 330
           H     APS AA  S PT+  +PHA PP++
Sbjct: 397 HSQLNRAPSQAA-ESSPTKMDAPHAQPPSK 425


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,415,454
Number of Sequences: 219361
Number of extensions: 1406451
Number of successful extensions: 3503
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3503
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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