| Clone Name | rbags5d13 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_467534.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1437 Score = 347 bits (175), Expect = 3e-92 Identities = 334/387 (86%) Strand = Plus / Minus Query: 202 ccattccagttctaactccatctcacctgattctacgttctgcagctttaggttcacttc 261 |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| Sbjct: 1210 ccattccagttctaactccatctcacctgattctacattctgcaactttaggtgcacttc 1151 Query: 262 ctgttttacctttcccgacgaaatattgacaatgctgtcgctcaacaggcaattgtctct 321 |||||||||||| |||||| || ||||||| |||| || ||| |||| ||||||| | Sbjct: 1150 ctgttttaccttgcccgacacaacattgacagtgctatctttcaccagggcattgtcttt 1091 Query: 322 ggtcatgaaccaccttccaatttgcatgtctgcgtgacgcgacgggtctccgaaggccat 381 |||||||||||||||||||||||||||||| | |||||| || ||||| |||||||| Sbjct: 1090 ggtcatgaaccaccttccaatttgcatgtcaccaacacgcgagggatctccaaaggccat 1031 Query: 382 ggcagctgtgatcattggcttcagatctatctctgcttcccccatgatatcgtcagcaga 441 | | |||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| Sbjct: 1030 gacggctgtgatcattggttgaagatctatctccgcttcccccatgatatcatcagcaga 971 Query: 442 gaaagtgtcgtgatcatacacttcaagttttaaaggtccataatttcgaggaactgatag 501 ||| || || || || || ||||||||||| | |||||||||||||||||||| ||||| Sbjct: 970 gaacgtatcatggtcgtatacttcaagtttaagaggtccataatttcgaggaattgatat 911 Query: 502 agtaagaacctcattccataccgggttcaggtcactcgctttaactgttgtttgagcctt 561 |||| |||||||||||||| ||||||| |||||||| |||||| || |||||||| || Sbjct: 910 cttaagcacctcattccatactgggttcaagtcactcggtttaacagtggtttgagcttt 851 Query: 562 ctgctctccaagacttaaaacaacata 588 |||||| ||||| ||| ||||||||| Sbjct: 850 ctgctccccaagtgttagaacaacata 824
>dbj|AK066163.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013051C01, full insert sequence Length = 1438 Score = 347 bits (175), Expect = 3e-92 Identities = 334/387 (86%) Strand = Plus / Minus Query: 202 ccattccagttctaactccatctcacctgattctacgttctgcagctttaggttcacttc 261 |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| Sbjct: 1210 ccattccagttctaactccatctcacctgattctacattctgcaactttaggtgcacttc 1151 Query: 262 ctgttttacctttcccgacgaaatattgacaatgctgtcgctcaacaggcaattgtctct 321 |||||||||||| |||||| || ||||||| |||| || ||| |||| ||||||| | Sbjct: 1150 ctgttttaccttgcccgacacaacattgacagtgctatctttcaccagggcattgtcttt 1091 Query: 322 ggtcatgaaccaccttccaatttgcatgtctgcgtgacgcgacgggtctccgaaggccat 381 |||||||||||||||||||||||||||||| | |||||| || ||||| |||||||| Sbjct: 1090 ggtcatgaaccaccttccaatttgcatgtcaccaacacgcgagggatctccaaaggccat 1031 Query: 382 ggcagctgtgatcattggcttcagatctatctctgcttcccccatgatatcgtcagcaga 441 | | |||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| Sbjct: 1030 gacggctgtgatcattggttgaagatctatctccgcttcccccatgatatcatcagcaga 971 Query: 442 gaaagtgtcgtgatcatacacttcaagttttaaaggtccataatttcgaggaactgatag 501 ||| || || || || || ||||||||||| | |||||||||||||||||||| ||||| Sbjct: 970 gaacgtatcatggtcgtatacttcaagtttaagaggtccataatttcgaggaattgatat 911 Query: 502 agtaagaacctcattccataccgggttcaggtcactcgctttaactgttgtttgagcctt 561 |||| |||||||||||||| ||||||| |||||||| |||||| || |||||||| || Sbjct: 910 cttaagcacctcattccatactgggttcaagtcactcggtttaacagtggtttgagcttt 851 Query: 562 ctgctctccaagacttaaaacaacata 588 |||||| ||||| ||| ||||||||| Sbjct: 850 ctgctccccaagtgttagaacaacata 824
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 244 bits (123), Expect = 3e-61 Identities = 213/243 (87%) Strand = Plus / Plus Query: 202 ccattccagttctaactccatctcacctgattctacgttctgcagctttaggttcacttc 261 |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| Sbjct: 30017046 ccattccagttctaactccatctcacctgattctacattctgcaactttaggtgcacttc 30017105 Query: 262 ctgttttacctttcccgacgaaatattgacaatgctgtcgctcaacaggcaattgtctct 321 |||||||||||| |||||| || ||||||| |||| || ||| |||| ||||||| | Sbjct: 30017106 ctgttttaccttgcccgacacaacattgacagtgctatctttcaccagggcattgtcttt 30017165 Query: 322 ggtcatgaaccaccttccaatttgcatgtctgcgtgacgcgacgggtctccgaaggccat 381 |||||||||||||||||||||||||||||| | |||||| || ||||| |||||||| Sbjct: 30017166 ggtcatgaaccaccttccaatttgcatgtcaccaacacgcgagggatctccaaaggccat 30017225 Query: 382 ggcagctgtgatcattggcttcagatctatctctgcttcccccatgatatcgtcagcaga 441 | | |||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| Sbjct: 30017226 gacggctgtgatcattggttgaagatctatctccgcttcccccatgatatcatcagcaga 30017285 Query: 442 gaa 444 ||| Sbjct: 30017286 gaa 30017288 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 465 caagttttaaaggtccataatttcgaggaactgatagagtaagaacctcattccataccg 524 ||||||| | |||||||||||||||||||| ||||| |||| |||||||||||||| | Sbjct: 30018076 caagtttaagaggtccataatttcgaggaattgatatcttaagcacctcattccatactg 30018135 Query: 525 ggttcaggtcactcgctttaactgttgtttgagccttctgc 565 |||||| |||||||| |||||| || |||||||| |||||| Sbjct: 30018136 ggttcaagtcactcggtttaacagtggtttgagctttctgc 30018176
>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0654B04 Length = 156907 Score = 244 bits (123), Expect = 3e-61 Identities = 213/243 (87%) Strand = Plus / Plus Query: 202 ccattccagttctaactccatctcacctgattctacgttctgcagctttaggttcacttc 261 |||||||||||||||||||||||||||||||||||| ||||||| |||||||| |||||| Sbjct: 117322 ccattccagttctaactccatctcacctgattctacattctgcaactttaggtgcacttc 117381 Query: 262 ctgttttacctttcccgacgaaatattgacaatgctgtcgctcaacaggcaattgtctct 321 |||||||||||| |||||| || ||||||| |||| || ||| |||| ||||||| | Sbjct: 117382 ctgttttaccttgcccgacacaacattgacagtgctatctttcaccagggcattgtcttt 117441 Query: 322 ggtcatgaaccaccttccaatttgcatgtctgcgtgacgcgacgggtctccgaaggccat 381 |||||||||||||||||||||||||||||| | |||||| || ||||| |||||||| Sbjct: 117442 ggtcatgaaccaccttccaatttgcatgtcaccaacacgcgagggatctccaaaggccat 117501 Query: 382 ggcagctgtgatcattggcttcagatctatctctgcttcccccatgatatcgtcagcaga 441 | | |||||||||||||| | ||||||||||| ||||||||||||||||| |||||||| Sbjct: 117502 gacggctgtgatcattggttgaagatctatctccgcttcccccatgatatcatcagcaga 117561 Query: 442 gaa 444 ||| Sbjct: 117562 gaa 117564 Score = 97.6 bits (49), Expect = 4e-17 Identities = 88/101 (87%) Strand = Plus / Plus Query: 465 caagttttaaaggtccataatttcgaggaactgatagagtaagaacctcattccataccg 524 ||||||| | |||||||||||||||||||| ||||| |||| |||||||||||||| | Sbjct: 118352 caagtttaagaggtccataatttcgaggaattgatatcttaagcacctcattccatactg 118411 Query: 525 ggttcaggtcactcgctttaactgttgtttgagccttctgc 565 |||||| |||||||| |||||| || |||||||| |||||| Sbjct: 118412 ggttcaagtcactcggtttaacagtggtttgagctttctgc 118452
>gb|AY109863.1| Zea mays CL6963_1 mRNA sequence Length = 1436 Score = 165 bits (83), Expect = 2e-37 Identities = 161/187 (86%) Strand = Plus / Minus Query: 314 ttgtctctggtcatgaaccaccttccaatttgcatgtctgcgtgacgcgacgggtctccg 373 |||||| |||||||||||||||| |||||||||||||| | |||| || | ||||| Sbjct: 1011 ttgtctttggtcatgaaccacctcccaatttgcatgtcaccaagacgtgaagtatctcca 952 Query: 374 aaggccatggcagctgtgatcattggcttcagatctatctctgcttcccccatgatatcg 433 ||||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct: 951 aaggccatggcggctgtgatcattggctggagatctatctctgcttcacccatgatatca 892 Query: 434 tcagcagagaaagtgtcgtgatcatacacttcaagttttaaaggtccataatttcgagga 493 || || ||||| | || || ||||||||||||||||||| |||||| |||||||||||| Sbjct: 891 tcggctgagaacatatcatggtcatacacttcaagttttagaggtccgtaatttcgagga 832 Query: 494 actgata 500 || |||| Sbjct: 831 acagata 825 Score = 87.7 bits (44), Expect = 4e-14 Identities = 65/72 (90%) Strand = Plus / Minus Query: 202 ccattccagttctaactccatctcacctgattctacgttctgcagctttaggttcacttc 261 |||||| || |||||||||| |||||| |||||||||||||||||||||| || ||| || Sbjct: 1123 ccattctagctctaactccagctcaccagattctacgttctgcagctttaagtgcacctc 1064 Query: 262 ctgttttacctt 273 |||||||||||| Sbjct: 1063 ctgttttacctt 1052
>gb|AC149277.11| Mus musculus BAC clone RP24-213J23 from chromosome 7, complete sequence Length = 198579 Score = 42.1 bits (21), Expect = 2.0 Identities = 21/21 (100%) Strand = Plus / Plus Query: 119 aagcttcattaactagatatg 139 ||||||||||||||||||||| Sbjct: 184438 aagcttcattaactagatatg 184458
>gb|AC099007.2| Drosophila melanogaster clone BACR16B07, complete sequence Length = 172393 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 gcttcattaactagatatgttttg 144 |||||||||||||||| ||||||| Sbjct: 100454 gcttcattaactagatgtgttttg 100431
>gb|AC132412.2| Mus musculus BAC clone RP23-355N5 from chromosome 6, complete sequence Length = 171747 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 acattgtacagccttcattt 90 |||||||||||||||||||| Sbjct: 170822 acattgtacagccttcattt 170803
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tgatcattggcttcagatct 409 |||||||||||||||||||| Sbjct: 13722667 tgatcattggcttcagatct 13722686
>gb|AC122453.4| Mus musculus BAC clone RP24-258A18 from chromosome 17, complete sequence Length = 177389 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 taactagatatgttttgaag 147 |||||||||||||||||||| Sbjct: 21282 taactagatatgttttgaag 21301
>gb|AC158340.9| Mus musculus chromosome 1, clone RP24-161N8, complete sequence Length = 163123 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 372 cgaaggccatggcagctgtg 391 |||||||||||||||||||| Sbjct: 45217 cgaaggccatggcagctgtg 45236
>emb|AL731653.1| Human DNA sequence from clone RP11-33D13 on chromosome 10 Contains the gene for pancreatic lipase (PNLIP) and a pseudogene similar to part of pancreatic lipase (PNLIP), complete sequence Length = 65205 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ggtctccgaaggccatggcagctg 389 ||||||||||| |||||||||||| Sbjct: 63843 ggtctccgaagtccatggcagctg 63866
>emb|AL121757.7|HSDJ828H9 Human DNA sequence from clone RP5-828H9 on chromosome 20 Contains two novel genes and two CpG islands, complete sequence Length = 167013 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 204 attccagttctaactccatctcac 227 ||||||||||| |||||||||||| Sbjct: 277 attccagttctcactccatctcac 254
>emb|AL050403.16|HSDJ697P8 Human DNA sequence from clone RP4-697P8 on chromosome 20 Contains two novel genes and the FAT1P1 gene for FAT tumour suppressor homolog 1 (Drosophila) pseudogene 1, complete sequence Length = 144924 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 153 cagcataaagggcaaaaggataca 176 |||||||||||| ||||||||||| Sbjct: 39420 cagcataaaggggaaaaggataca 39397
>emb|Y19210.1|HSDNAHB5 Homo sapiens KRTHB5 gene for type II hair keratin 5, exons 1 to 9 Length = 9851 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctctggtcatgaaccaccttccaa 341 |||||||| ||||||||||||||| Sbjct: 918 ctctggtcctgaaccaccttccaa 941
>gb|AC104008.4| Homo sapiens chromosome 8, clone RP11-192I2, complete sequence Length = 129898 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 caccttccaatttgcatgtctgcg 355 |||||||||||||||||| ||||| Sbjct: 11546 caccttccaatttgcatggctgcg 11569
>gb|AC016825.12| Homo sapiens chromosome 10 clone RP11-498B4, complete sequence Length = 198261 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 366 ggtctccgaaggccatggcagctg 389 ||||||||||| |||||||||||| Sbjct: 638 ggtctccgaagtccatggcagctg 661
>gb|AC007184.4| Arabidopsis thaliana chromosome 2 clone T11P11 map mi54, complete sequence Length = 17599 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 attaactagatatgttttga 145 |||||||||||||||||||| Sbjct: 11498 attaactagatatgttttga 11517
>gb|AC093881.2| Homo sapiens BAC clone RP11-655B23 from 4, complete sequence Length = 181245 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 137 atgttttgaagccatccagcataa 160 ||||||| |||||||||||||||| Sbjct: 114754 atgttttcaagccatccagcataa 114777
>dbj|AK148759.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN full-length enriched library, clone:7120442P12 product:unclassifiable, full insert sequence Length = 5840 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 71 acattgtacagccttcattt 90 |||||||||||||||||||| Sbjct: 2585 acattgtacagccttcattt 2604
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tgatcattggcttcagatct 409 |||||||||||||||||||| Sbjct: 13717642 tgatcattggcttcagatct 13717661
>gb|AC078865.22| Homo sapiens 12 BAC RP3-416H24 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 69230 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 318 ctctggtcatgaaccaccttccaa 341 |||||||| ||||||||||||||| Sbjct: 45124 ctctggtcctgaaccaccttccaa 45147
>gb|AC104244.9| Homo sapiens chromosome 8, clone RP11-1038G5, complete sequence Length = 155899 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 332 caccttccaatttgcatgtctgcg 355 |||||||||||||||||| ||||| Sbjct: 64266 caccttccaatttgcatggctgcg 64243
>gb|AC137076.1| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBb0033D20, from chromosome 3, complete sequence Length = 128707 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 390 tgatcattggcttcagatct 409 |||||||||||||||||||| Sbjct: 113339 tgatcattggcttcagatct 113358
>gb|AC146595.2| Mus musculus BAC clone RP24-164G18 from chromosome 17, complete sequence Length = 132103 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 taactagatatgttttgaag 147 |||||||||||||||||||| Sbjct: 115212 taactagatatgttttgaag 115231
>emb|AJ000238.1|HVJ000238 Hordeum vulgare mRNA for expressed sequence tag Length = 300 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 442 gaaagtgtcgtgatcatacacttc 465 |||||||||||||||||| ||||| Sbjct: 113 gaaagtgtcgtgatcataaacttc 90
>gb|AE003452.5| Drosophila melanogaster chromosome 2R, section 60 of 73 of the complete sequence Length = 303438 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 121 gcttcattaactagatatgttttg 144 |||||||||||||||| ||||||| Sbjct: 291685 gcttcattaactagatgtgttttg 291708
>dbj|AP001120.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-677O4, complete sequence Length = 181123 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 tcacttcctgttttaccttt 274 |||||||||||||||||||| Sbjct: 113707 tcacttcctgttttaccttt 113726
>gb|AE017198.1| Lactobacillus johnsonii NCC 533, complete genome Length = 1992676 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 84 ttcatttttacacatttcgg 103 |||||||||||||||||||| Sbjct: 1345326 ttcatttttacacatttcgg 1345345
>gb|AC128664.3| Mus musculus BAC clone RP24-328H10 from 6, complete sequence Length = 147041 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 71 acattgtacagccttcattt 90 |||||||||||||||||||| Sbjct: 46262 acattgtacagccttcattt 46243
>gb|AC004313.1|AC004313 Drosophila melanogaster (P1 DS02368 (D205)) DNA sequence, complete sequence Length = 80993 Score = 40.1 bits (20), Expect = 8.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 121 gcttcattaactagatatgttttg 144 |||||||||||||||| ||||||| Sbjct: 64364 gcttcattaactagatgtgttttg 64341
>gb|AC135863.4| Mus musculus BAC clone RP23-453H18 from 1, complete sequence Length = 197162 Score = 40.1 bits (20), Expect = 8.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 281 gaaatattgacaatgctgtc 300 |||||||||||||||||||| Sbjct: 118637 gaaatattgacaatgctgtc 118618 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,389,435 Number of Sequences: 3902068 Number of extensions: 5389435 Number of successful extensions: 96155 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 96010 Number of HSP's gapped (non-prelim): 141 length of query: 591 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 568 effective length of database: 17,143,297,704 effective search space: 9737393095872 effective search space used: 9737393095872 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)