ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5d11 |
|---|---|
| Clone Library Name | barley_pub |
| No. | Definition | Score (bits) |
E Value |
1 | RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment) | 58 | 9e-09 | 2 | RL18_RAT (P12001) 60S ribosomal protein L18 | 55 | 6e-08 | 3 | RL18_ORENI (P69091) 60S ribosomal protein L18 | 55 | 6e-08 | 4 | RL18_OREMO (P69090) 60S ribosomal protein L18 | 55 | 6e-08 | 5 | RL18_MOUSE (P35980) 60S ribosomal protein L18 | 55 | 6e-08 | 6 | RL18_HUMAN (Q07020) 60S ribosomal protein L18 | 55 | 6e-08 | 7 | RL18_ICTPU (Q90YV0) 60S ribosomal protein L18 | 55 | 7e-08 | 8 | RL18_ARATH (P42791) 60S ribosomal protein L18 | 54 | 1e-07 | 9 | RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B) | 49 | 3e-06 | 10 | RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A) | 47 | 2e-05 | 11 | RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B | 42 | 4e-04 | 12 | RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A | 42 | 4e-04 | 13 | RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28) | 31 | 0.88 | 14 | RL18_TRYBB (P50885) 60S ribosomal protein L18 | 29 | 4.4 |
|---|
>RL18_CICAR (O65729) 60S ribosomal protein L18 (Fragment)| Length = 183 Score = 57.8 bits (138), Expect = 9e-09 Identities = 25/25 (100%), Positives = 25/25 (100%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PGVPHSHTKPYVRSKGRKFEKARGR Sbjct: 151 PGVPHSHTKPYVRSKGRKFEKARGR 175
>RL18_RAT (P12001) 60S ribosomal protein L18| Length = 187 Score = 55.1 bits (131), Expect = 6e-08 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 155 PGTPHSHTKPYVRSKGRKFERARGR 179
>RL18_ORENI (P69091) 60S ribosomal protein L18| Length = 187 Score = 55.1 bits (131), Expect = 6e-08 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 155 PGTPHSHTKPYVRSKGRKFERARGR 179
>RL18_OREMO (P69090) 60S ribosomal protein L18| Length = 187 Score = 55.1 bits (131), Expect = 6e-08 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 155 PGTPHSHTKPYVRSKGRKFERARGR 179
>RL18_MOUSE (P35980) 60S ribosomal protein L18| Length = 187 Score = 55.1 bits (131), Expect = 6e-08 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 155 PGTPHSHTKPYVRSKGRKFERARGR 179
>RL18_HUMAN (Q07020) 60S ribosomal protein L18| Length = 187 Score = 55.1 bits (131), Expect = 6e-08 Identities = 23/25 (92%), Positives = 24/25 (96%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PG PHSHTKPYVRSKGRKFE+ARGR Sbjct: 155 PGTPHSHTKPYVRSKGRKFERARGR 179
>RL18_ICTPU (Q90YV0) 60S ribosomal protein L18| Length = 187 Score = 54.7 bits (130), Expect = 7e-08 Identities = 22/25 (88%), Positives = 24/25 (96%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PG PHSHTKPY+RSKGRKFE+ARGR Sbjct: 155 PGTPHSHTKPYIRSKGRKFERARGR 179
>RL18_ARATH (P42791) 60S ribosomal protein L18| Length = 187 Score = 53.9 bits (128), Expect = 1e-07 Identities = 22/25 (88%), Positives = 25/25 (100%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PGVPHSH+KPYVR+KGRKFEKARG+ Sbjct: 155 PGVPHSHSKPYVRAKGRKFEKARGK 179
>RL18B_XENLA (P02412) 60S ribosomal protein L18-B (L14B)| Length = 187 Score = 49.3 bits (116), Expect = 3e-06 Identities = 21/25 (84%), Positives = 22/25 (88%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 PG PHS TKPYV SKGRKFE+ARGR Sbjct: 155 PGTPHSRTKPYVLSKGRKFERARGR 179
>RL18A_XENLA (P09897) 60S ribosomal protein L18-A (L14A)| Length = 187 Score = 47.0 bits (110), Expect = 2e-05 Identities = 20/25 (80%), Positives = 21/25 (84%) Frame = -2 Query: 75 PGVPHSHTKPYVRSKGRKFEKARGR 1 P PHS TKPYV SKGRKFE+ARGR Sbjct: 155 PSTPHSRTKPYVLSKGRKFERARGR 179
>RL18B_SCHPO (Q8TFH1) 60S ribosomal protein L18-B| Length = 187 Score = 42.4 bits (98), Expect = 4e-04 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -2 Query: 66 PHSHTKPYVRSKGRKFEKARGR 1 PH H PYVRS+GRKFE+ARGR Sbjct: 158 PHKHKAPYVRSEGRKFERARGR 179
>RL18A_SCHPO (Q10192) 60S ribosomal protein L18-A| Length = 187 Score = 42.4 bits (98), Expect = 4e-04 Identities = 17/22 (77%), Positives = 19/22 (86%) Frame = -2 Query: 66 PHSHTKPYVRSKGRKFEKARGR 1 PH H PYVRS+GRKFE+ARGR Sbjct: 158 PHKHKAPYVRSEGRKFERARGR 179
>RL18_YEAST (P07279) 60S ribosomal protein L18 (RP28)| Length = 186 Score = 31.2 bits (69), Expect = 0.88 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -2 Query: 66 PHSHTKPYVRSKGRKFEKARGR 1 PH P + S GRKFE+ARGR Sbjct: 157 PHKGKAPRILSTGRKFERARGR 178
>RL18_TRYBB (P50885) 60S ribosomal protein L18| Length = 193 Score = 28.9 bits (63), Expect = 4.4 Identities = 11/24 (45%), Positives = 18/24 (75%) Frame = -2 Query: 72 GVPHSHTKPYVRSKGRKFEKARGR 1 GVP SH KP+V S+G++ +++ R Sbjct: 163 GVPGSHAKPHVSSRGKERQRSSKR 186 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 12,586,281 Number of Sequences: 219361 Number of extensions: 92410 Number of successful extensions: 316 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 312 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 316 length of database: 80,573,946 effective HSP length: 0 effective length of database: 80,573,946 effective search space used: 1933774704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
