ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5d04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GP110_HUMAN (Q5T601) Probable G-protein coupled receptor 110 pre... 32 1.5
2DPOG2_HUMAN (Q9UHN1) DNA polymerase gamma subunit 2, mitochondri... 31 2.5

>GP110_HUMAN (Q5T601) Probable G-protein coupled receptor 110 precursor|
           (G-protein coupled receptor PGR19) (G-protein coupled
           receptor KPG_012)
          Length = 911

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = -1

Query: 552 QVTCYPTTTMATGYLLRGSSKLSDLRAKAEKFCGSPRTELSKLFP 418
           QVT +   ++  GY + GSS  S+L +  E      +T L KLFP
Sbjct: 200 QVTQFRNGSIVAGYEVVGSSSASELLSAIEHVAEKAKTALHKLFP 244



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>DPOG2_HUMAN (Q9UHN1) DNA polymerase gamma subunit 2, mitochondrial precursor|
           (EC 2.7.7.7) (Mitochondrial DNA polymerase accessory
           subunit) (PolG-beta) (MtPolB) (DNA polymerase gamma
           accessory 55 kDa subunit) (p55)
          Length = 485

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = +3

Query: 312 HPTYLPAGI*AYVQVKPSRQDLSVSRWSAPLLVMFREKAWRALSAVIHKTSPLLPSD 482
           HP + P G+         R++L+   W++  +V+FRE+ +  + A+ HK  PLLP D
Sbjct: 96  HPGFGPLGV-------ELRKNLAAEWWTS--VVVFREQVF-PVDALHHKPGPLLPGD 142


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,471,051
Number of Sequences: 219361
Number of extensions: 1953876
Number of successful extensions: 5005
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4993
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5481822624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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