ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4o01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67) (G... 38 1e-05
2SKP2_HUMAN (Q13309) S-phase kinase-associated protein 2 (F-box p... 30 5.3
3SODM_DROME (Q00637) Superoxide dismutase [Mn], mitochondrial pre... 30 7.0

>STSYN_PEA (Q93XK2) Stachyose synthase precursor (EC 2.4.1.67)|
           (Galactinol--raffinose galactosyltransferase)
          Length = 853

 Score = 37.7 bits (86), Expect(2) = 1e-05
 Identities = 15/42 (35%), Positives = 26/42 (61%)
 Frame = -2

Query: 637 TKSLELSLVTMACEIYTISPIQVYGGAVGFAPLGLLNMFNSG 512
           ++ ++ ++     E+Y+  P+    G + FAP+GL NMFNSG
Sbjct: 741 SEPIQFTIQPSTFELYSFVPVTKLCGGIKFAPIGLTNMFNSG 782



 Score = 30.8 bits (68), Expect(2) = 1e-05
 Identities = 16/42 (38%), Positives = 24/42 (57%)
 Frame = -3

Query: 459 QIKCRGPGRFGAYSSARPALCRVDANEVEFSHSDDGLLAFDL 334
           +IK +G G F AYSS  P   +++  EV+F    DG L  ++
Sbjct: 796 KIKVKGGGSFLAYSSESPKKFQLNGCEVDFEWLGDGKLCVNV 837



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>SKP2_HUMAN (Q13309) S-phase kinase-associated protein 2 (F-box protein Skp2)|
           (Cyclin A/CDK2-associated protein p45) (p45skp2)
           (F-box/LRR-repeat protein 1)
          Length = 424

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 1/88 (1%)
 Frame = -1

Query: 584 ITDTGLRWGCWVCATWTAKHVQLRVAHSTVSDAQLILQLRQFRSNAEGQDVLGRIHPLGR 405
           + +  L W    C  +T KHVQ+ VAH  VS+    L L  +R N +  D    +  L R
Sbjct: 258 LDELNLSW----CFDFTEKHVQVAVAH--VSETITQLNLSGYRKNLQKSD----LSTLVR 307

Query: 404 HSAELMRMR*S-SVILMMACWHLISQMD 324
               L+ +  S SV+L   C+    Q++
Sbjct: 308 RCPNLVHLDLSDSVMLKNDCFQEFFQLN 335



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>SODM_DROME (Q00637) Superoxide dismutase [Mn], mitochondrial precursor (EC|
           1.15.1.1)
          Length = 217

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = +2

Query: 101 EHTLLLNPVRRVIVSEAGRQQLRRNHHDINISNWSREMNGAEQKLQQEKSRSHTVSGLQQ 280
           +HTL   P     +     +++   HH  +   +   +N AE++L++ KS+S T   +Q 
Sbjct: 18  KHTLPKLPYDYAALEPIICREIMELHHQKHHQTYVNNLNAAEEQLEEAKSKSDTTKLIQL 77

Query: 281 A 283
           A
Sbjct: 78  A 78


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 102,774,827
Number of Sequences: 219361
Number of extensions: 2215566
Number of successful extensions: 4769
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4767
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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