ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4o01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472912.1| Oryza sativa (japonica cultivar-group), predic... 115 2e-22
2dbj|AK100197.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
3dbj|AK099817.1| Oryza sativa (japonica cultivar-group) cDNA clon... 115 2e-22
4emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4,... 92 3e-15
5dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
6emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 92 3e-15
7gb|AY111353.1| Zea mays CL37737_-1 mRNA sequence 78 4e-11
8ref|NM_001015129.1| Drosophila melanogaster CG40224-PA.3 (CG4022... 44 0.60
9gb|CP000191.1| Drosophila melanogaster genomic scaffold 21100002... 44 0.60
10emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on ch... 44 0.60
11gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, com... 42 2.4
12gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, comple... 42 2.4
13gb|DQ163889.1| Candidatus Hamiltonella defensa clone P210050 gen... 42 2.4
14gb|DQ163430.1| Candidatus Hamiltonella defensa clone P090034 gen... 42 2.4
15ref|NM_120071.1| Arabidopsis thaliana kinase AT4G39110 mRNA, com... 40 9.4
16gb|AF241730.2| Homo sapiens chromosome X clone RP5-958I11 map p1... 40 9.4
17gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children'... 40 9.4
18gb|AC146132.3| Pan troglodytes BAC clone RP43-23H13 from 7, comp... 40 9.4
19ref|XM_385392.1| Gibberella zeae PH-1 chromosome 3 hypothetical ... 40 9.4
20gb|AC131714.4| Mus musculus BAC clone RP23-179L6 from chromosome... 40 9.4
21ref|XM_737465.1| Plasmodium chabaudi chabaudi hypothetical prote... 40 9.4
22gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete se... 40 9.4
23emb|AL359073.25| Human DNA sequence from clone RP11-432F4 on chr... 40 9.4
24gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, com... 40 9.4
25gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome... 40 9.4
26emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, ... 40 9.4
27emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BA... 40 9.4
28emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, B... 40 9.4
29gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, co... 40 9.4
30gb|AC023118.4|AC023118 Homo sapiens BAC clone RP11-277L22 from 1... 40 9.4
31gb|AC154016.2| Mus musculus 6 BAC RP24-146M9 (Roswell Park Cance... 40 9.4
32gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, com... 40 9.4
33gb|AC006021.2|AC006021 Homo sapiens PAC clone RP5-1129L24 from 7... 40 9.4
34emb|BX927276.23| Zebrafish DNA sequence from clone CH211-124A3 i... 40 9.4
35dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 9.4
36emb|AL513468.9| Mouse DNA sequence from clone RP23-104I6 on chro... 40 9.4
37dbj|AP001577.3| Homo sapiens genomic DNA, chromosome 6q25.2, clo... 40 9.4
38emb|AL133368.6|CNS01DUT Human chromosome 14 DNA sequence BAC R-4... 40 9.4 
>ref|XM_472912.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2217

 Score =  115 bits (58), Expect = 2e-22
 Identities = 285/358 (79%), Gaps = 2/358 (0%)
 Strand = Plus / Minus

                                                                        
Query: 332  gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 391
            ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 2159 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2100

                                                                        
Query: 392  actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 451
            || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 2099 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2040

                                                                        
Query: 452  ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 511
            | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 2039 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 1980

                                                                        
Query: 512  cccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaac 571
             || |||||| ||||||| | ||||||||| || ||||||  ||||   |||||  ||||
Sbjct: 1979 -cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaac 1921

                                                                        
Query: 572  ctgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaact 631
            || |||| | | ||||||||| |||| ||||| ||| ||   ||| |||| ||||| |  
Sbjct: 1920 ctttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccata-g 1862

                                                                      
Query: 632  tttggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctc 689
            | || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||
Sbjct: 1861 tctgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctc 1804
to top
>dbj|AK100197.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037L18, full
            insert sequence
          Length = 2606

 Score =  115 bits (58), Expect = 2e-22
 Identities = 285/358 (79%), Gaps = 2/358 (0%)
 Strand = Plus / Minus

                                                                        
Query: 332  gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 391
            ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 2227 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2168

                                                                        
Query: 392  actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 451
            || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 2167 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2108

                                                                        
Query: 452  ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 511
            | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 2107 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 2048

                                                                        
Query: 512  cccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaac 571
             || |||||| ||||||| | ||||||||| || ||||||  ||||   |||||  ||||
Sbjct: 2047 -cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaac 1989

                                                                        
Query: 572  ctgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaact 631
            || |||| | | ||||||||| |||| ||||| ||| ||   ||| |||| ||||| |  
Sbjct: 1988 ctttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccata-g 1930

                                                                      
Query: 632  tttggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctc 689
            | || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||
Sbjct: 1929 tctgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctc 1872
to top
>dbj|AK099817.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013100E13, full
            insert sequence
          Length = 2449

 Score =  115 bits (58), Expect = 2e-22
 Identities = 285/358 (79%), Gaps = 2/358 (0%)
 Strand = Plus / Minus

                                                                        
Query: 332  gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 391
            ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 2183 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 2124

                                                                        
Query: 392  actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 451
            || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 2123 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 2064

                                                                        
Query: 452  ttgatctgaactgtcgtagctgaagaatcaactgtgcatctgatactgtcgagtgcgcca 511
            | |||||||| |||  |  ||||| ||||| ||||||   |||   | ||||| || |||
Sbjct: 2063 tggatctgaattgtgatctctgaacaatcacctgtgctcgtgacgttttcgagcgcacca 2004

                                                                        
Query: 512  cccggagttgaacatgtttagcagtccaagtggcgcaaacccaacagccccaccgtaaac 571
             || |||||| ||||||| | ||||||||| || ||||||  ||||   |||||  ||||
Sbjct: 2003 -cctgagttgtacatgttaaccagtccaagaggagcaaactgaacaaagccaccaaaaac 1945

                                                                        
Query: 572  ctgtatcggtgatatggtatagatctcacatgccatggtgaccaatgaaagctccaaact 631
            || |||| | | ||||||||| |||| ||||| ||| ||   ||| |||| ||||| |  
Sbjct: 1944 ctttatcagcgctatggtatatatcttacatgtcatagtagacaaggaaacctccata-g 1886

                                                                      
Query: 632  tttggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctc 689
            | || |||||||| |||||||| |||||||||||||| |||||| |||||||||||||
Sbjct: 1885 tctgatgcttctgaagccttgagagagaacatgaattaaaagcaaatactgcagtctc 1828
to top
>emb|AL606614.3|OSJN00047 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0011N17,
             complete sequence
          Length = 129498

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 109/130 (83%)
 Strand = Plus / Plus

                                                                         
Query: 332   gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 391
             ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 40519 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 40578

                                                                         
Query: 392   actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 451
             || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 40579 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 40638

                       
Query: 452   ttgatctgaa 461
             | ||||||||
Sbjct: 40639 tggatctgaa 40648



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 660   acatgaattgaaagcatatactgcagtctc 689
             ||||||||| |||||| |||||||||||||
Sbjct: 41131 acatgaattaaaagcaaatactgcagtctc 41160
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 109/130 (83%)
 Strand = Plus / Plus

                                                                            
Query: 332      gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 391
                ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 24043540 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 24043599

                                                                            
Query: 392      actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 451
                || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 24043600 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 24043659

                          
Query: 452      ttgatctgaa 461
                | ||||||||
Sbjct: 24043660 tggatctgaa 24043669



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                              
Query: 660      acatgaattgaaagcatatactgcagtctc 689
                ||||||||| |||||| |||||||||||||
Sbjct: 24044152 acatgaattaaaagcaaatactgcagtctc 24044181
to top
>emb|AL442104.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0510A06, complete
            sequence
          Length = 90767

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 109/130 (83%)
 Strand = Plus / Plus

                                                                        
Query: 332  gagagatcaaatgccagcaagccatcatcagaatgactgaactctacctcattcgcatca 391
            ||||||||||| ||||| ||||||||||| |  ||  |||||||||| |||| | |||||
Sbjct: 9782 gagagatcaaaggccaggaagccatcatctgtgtgtttgaactctacttcatgctcatca 9841

                                                                        
Query: 392  actctgcagagtgccggcctagcggatgaatacgccccaaaacgtcctggccctcggcat 451
            || ||||| | | ||||||| |  | ||||||||||||||| || |||||||||||||||
Sbjct: 9842 acactgcaaatttccggcctggttgctgaatacgccccaaaccgacctggccctcggcat 9901

                      
Query: 452  ttgatctgaa 461
            | ||||||||
Sbjct: 9902 tggatctgaa 9911



 Score = 44.1 bits (22), Expect = 0.60
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 660   acatgaattgaaagcatatactgcagtctc 689
             ||||||||| |||||| |||||||||||||
Sbjct: 10393 acatgaattaaaagcaaatactgcagtctc 10422
to top
>gb|AY111353.1| Zea mays CL37737_-1 mRNA sequence
          Length = 619

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 57/63 (90%)
 Strand = Plus / Plus

                                                                       
Query: 418 tgaatacgccccaaaacgtcctggccctcggcatttgatctgaactgtcgtagctgaaga 477
           ||||||||||||||| || ||||| ||||||||| | || ||||||||||||||||||||
Sbjct: 280 tgaatacgccccaaaccgccctggtcctcggcatcttatatgaactgtcgtagctgaaga 339

              
Query: 478 atc 480
           |||
Sbjct: 340 atc 342



 Score = 69.9 bits (35), Expect = 1e-08
 Identities = 52/58 (89%)
 Strand = Plus / Plus

                                                                     
Query: 632 tttggtgcttctggagccttgatagagaacatgaattgaaagcatatactgcagtctc 689
           ||||| | ||||| |||||||| ||||||||||||  |||||||||||||||||||||
Sbjct: 492 tttggngtttctgaagccttgaaagagaacatgaaccgaaagcatatactgcagtctc 549
to top
>ref|NM_001015129.1| Drosophila melanogaster CG40224-PA.3 (CG40224), mRNA
          Length = 807

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 22  caaaattgatctacataaatcttcaa 47
           |||||||||||||| |||||||||||
Sbjct: 622 caaaattgatctacctaaatcttcaa 597
to top
>gb|CP000191.1| Drosophila melanogaster genomic scaffold 211000022280172
          Length = 132906

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 22   caaaattgatctacataaatcttcaa 47
            |||||||||||||| |||||||||||
Sbjct: 1830 caaaattgatctacctaaatcttcaa 1855
to top
>emb|CT025674.13| Mouse DNA sequence from clone RP24-364I17 on chromosome 13, complete
             sequence
          Length = 117646

 Score = 44.1 bits (22), Expect = 0.60
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 293   atctctatgttcctgagtctgg 314
             ||||||||||||||||||||||
Sbjct: 29652 atctctatgttcctgagtctgg 29673
to top
>gb|AC115889.13| Mus musculus chromosome 3, clone RP24-409N2, complete sequence
          Length = 166218

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 311   ctggtgtgggaagatccatct 331
             |||||||||||||||||||||
Sbjct: 70958 ctggtgtgggaagatccatct 70938
to top
>gb|AC093887.3| Homo sapiens BAC clone RP11-667D12 from 4, complete sequence
          Length = 192886

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 353   ccatcatcagaatgactgaac 373
             |||||||||||||||||||||
Sbjct: 57243 ccatcatcagaatgactgaac 57223
to top
>gb|DQ163889.1| Candidatus Hamiltonella defensa clone P210050 genomic sequence
          Length = 1566

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 35  cataaatcttcaattttaact 55
           |||||||||||||||||||||
Sbjct: 180 cataaatcttcaattttaact 200
to top
>gb|DQ163430.1| Candidatus Hamiltonella defensa clone P090034 genomic sequence
          Length = 1379

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 35  cataaatcttcaattttaact 55
           |||||||||||||||||||||
Sbjct: 180 cataaatcttcaattttaact 200
to top
>ref|NM_120071.1| Arabidopsis thaliana kinase AT4G39110 mRNA, complete cds
          Length = 2637

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 611  gaccaatgaaagctccaaac 630
            ||||||||||||||||||||
Sbjct: 1369 gaccaatgaaagctccaaac 1350
to top
>gb|AF241730.2| Homo sapiens chromosome X clone RP5-958I11 map p11.4, complete sequence
          Length = 128427

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 333   agagatcaaatgccagcaag 352
             ||||||||||||||||||||
Sbjct: 65713 agagatcaaatgccagcaag 65732
to top
>gb|AC107274.11| Rattus norvegicus 18 BAC CH230-207M17 (Children's Hospital Oakland
            Research Institute) complete sequence
          Length = 217066

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 312  tggtgtgggaagatccatct 331
            ||||||||||||||||||||
Sbjct: 1716 tggtgtgggaagatccatct 1697
to top
>gb|AC146132.3| Pan troglodytes BAC clone RP43-23H13 from 7, complete sequence
          Length = 164355

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    caaaattgatctacataaat 41
             ||||||||||||||||||||
Sbjct: 10257 caaaattgatctacataaat 10238
to top
>ref|XM_385392.1| Gibberella zeae PH-1 chromosome 3 hypothetical protein (FG05216.1)
            partial mRNA
          Length = 5268

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 633  ttggtgcttctggagccttgatag 656
            |||||||||||| |||||||||||
Sbjct: 4858 ttggtgcttctgcagccttgatag 4835
to top
>gb|AC131714.4| Mus musculus BAC clone RP23-179L6 from chromosome 18, complete sequence
          Length = 193005

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 312   tggtgtgggaagatccatct 331
             ||||||||||||||||||||
Sbjct: 79578 tggtgtgggaagatccatct 79597
to top
>ref|XM_737465.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000685.01.0)
            partial mRNA
          Length = 2622

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 288  agagaatctctatgttcctg 307
            ||||||||||||||||||||
Sbjct: 2590 agagaatctctatgttcctg 2571
to top
>gb|AC145449.8| Medicago truncatula clone mth2-20m15, complete sequence
          Length = 122694

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   atataaacatcagtaattgg 202
             ||||||||||||||||||||
Sbjct: 22045 atataaacatcagtaattgg 22064
to top
>emb|AL359073.25| Human DNA sequence from clone RP11-432F4 on chromosome 9 Contains the
            5' end of the gene for regulator of differentiation 1
            (ROD1), a ribosomal protein L32 (RPL32) pseudogene and a
            CpG island.n, complete sequence
          Length = 64850

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 294  tctctatgttcctgagtctggtgt 317
            |||||||||| |||||||||||||
Sbjct: 9277 tctctatgttgctgagtctggtgt 9254
to top
>gb|AC158934.4| Mus musculus chromosome 3, clone RP23-218L17, complete sequence
          Length = 194631

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 312    tggtgtgggaagatccatct 331
              ||||||||||||||||||||
Sbjct: 129108 tggtgtgggaagatccatct 129089
to top
>gb|AC165083.2| Mus musculus BAC clone RP23-411I6 from chromosome 18, complete sequence
          Length = 208109

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 312   tggtgtgggaagatccatct 331
             ||||||||||||||||||||
Sbjct: 53655 tggtgtgggaagatccatct 53636
to top
>emb|AL161594.2|ATCHRIV90 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 90
          Length = 198987

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 611    gaccaatgaaagctccaaac 630
              ||||||||||||||||||||
Sbjct: 137907 gaccaatgaaagctccaaac 137926
to top
>emb|AL050351.1|ATT22F8 Arabidopsis thaliana DNA chromosome 4, BAC clone T22F8 (ESSA project)
          Length = 89035

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 611  gaccaatgaaagctccaaac 630
            ||||||||||||||||||||
Sbjct: 6443 gaccaatgaaagctccaaac 6462
to top
>emb|AL035679.1|ATF19H22 Arabidopsis thaliana DNA chromosome 4, BAC clone F19H22 (ESSA project)
          Length = 100469

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 611   gaccaatgaaagctccaaac 630
             ||||||||||||||||||||
Sbjct: 99896 gaccaatgaaagctccaaac 99915
to top
>gb|AC021241.10| Homo sapiens chromosome 18, clone RP11-350K6, complete sequence
          Length = 160748

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 665   aattgaaagcatatactgca 684
             ||||||||||||||||||||
Sbjct: 79351 aattgaaagcatatactgca 79370
to top
>gb|AC023118.4|AC023118 Homo sapiens BAC clone RP11-277L22 from 11, complete sequence
          Length = 154330

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   gaagagtaattgtttctgaa 148
             ||||||||||||||||||||
Sbjct: 10886 gaagagtaattgtttctgaa 10867
to top
>gb|AC154016.2| Mus musculus 6 BAC RP24-146M9 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 159862

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    caaaattgatctacataaat 41
             ||||||||||||||||||||
Sbjct: 60202 caaaattgatctacataaat 60183
to top
>gb|AC102844.11| Mus musculus chromosome 3, clone RP24-389H4, complete sequence
          Length = 199088

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 312  tggtgtgggaagatccatct 331
            ||||||||||||||||||||
Sbjct: 5977 tggtgtgggaagatccatct 5996
to top
>gb|AC006021.2|AC006021 Homo sapiens PAC clone RP5-1129L24 from 7q32-q34, complete sequence
          Length = 98240

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 22    caaaattgatctacataaat 41
             ||||||||||||||||||||
Sbjct: 70438 caaaattgatctacataaat 70419
to top
>emb|BX927276.23| Zebrafish DNA sequence from clone CH211-124A3 in linkage group 22,
              complete sequence
          Length = 166844

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 30     atctacataaatcttcaatt 49
              ||||||||||||||||||||
Sbjct: 162803 atctacataaatcttcaatt 162822
to top
>dbj|AP002751.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-682K9, complete
              sequence
          Length = 197847

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 129    gaagagtaattgtttctgaa 148
              ||||||||||||||||||||
Sbjct: 178221 gaagagtaattgtttctgaa 178202
to top
>emb|AL513468.9| Mouse DNA sequence from clone RP23-104I6 on chromosome X, complete
             sequence
          Length = 211194

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 37    taaatcttcaattttaacttgtac 60
             |||||||||||||||| |||||||
Sbjct: 78163 taaatcttcaattttaccttgtac 78186
to top
>dbj|AP001577.3| Homo sapiens genomic DNA, chromosome 6q25.2, clone:KB611H5
          Length = 144828

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 88    acatggtaagaaagaacata 107
             ||||||||||||||||||||
Sbjct: 63436 acatggtaagaaagaacata 63455
to top
>emb|AL133368.6|CNS01DUT Human chromosome 14 DNA sequence BAC R-436M15 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 163272

 Score = 40.1 bits (20), Expect = 9.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 357    catcagaatgactgaactct 376
              ||||||||||||||||||||
Sbjct: 111617 catcagaatgactgaactct 111636


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,961,575
Number of Sequences: 3902068
Number of extensions: 5961575
Number of successful extensions: 119626
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 119464
Number of HSP's gapped (non-prelim): 156
length of query: 689
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 666
effective length of database: 17,143,297,704
effective search space: 11417436270864
effective search space used: 11417436270864
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top