ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5c16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on ch... 46 0.14
2gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4... 44 0.54
3gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
4gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.5
5gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Ph... 40 8.5
6gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, c... 40 8.5
7gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosom... 40 8.5
8gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome 40 8.5
9gb|AC184157.2| Pan troglodytes BAC clone CH251-31B9 from chromos... 40 8.5
10gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromo... 40 8.5
11emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in... 40 8.5
12gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, co... 40 8.5
13gb|AC161864.9| Medicago truncatula clone mth2-69d21, complete se... 40 8.5
14emb|CR628337.1| Legionella pneumophila str. Lens complete genome 40 8.5
15emb|CR628336.1| Legionella pneumophila str. Paris complete genome 40 8.5
16emb|BX510303.6| Zebrafish DNA sequence from clone DKEY-184B7 in ... 40 8.5
17gb|AC182493.3| Pan troglodytes BAC clone CH251-215H7 from chromo... 40 8.5
18gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Ca... 40 8.5
19ref|XM_693199.1| PREDICTED: Danio rerio hypothetical protein LOC... 40 8.5
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
21gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J... 40 8.5
22gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome 40 8.5
23dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.5
24emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 i... 40 8.5

>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete
              sequence
          Length = 168158

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                         
Query: 245    tgaacctgaagtccacagcaatgtcca 271
              |||||||||||||||||||| ||||||
Sbjct: 135800 tgaacctgaagtccacagcactgtcca 135826



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>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence
          Length = 160858

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 384    atggtatctatggtcattcttgtctc 409
              |||||||||||||||||| |||||||
Sbjct: 152140 atggtatctatggtcatttttgtctc 152165



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>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12,
              complete sequence
          Length = 187972

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 106    gaaaccaaaaaataaattca 125
              ||||||||||||||||||||
Sbjct: 183414 gaaaccaaaaaataaattca 183433



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>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05,
             complete sequence
          Length = 82985

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 106   gaaaccaaaaaataaattca 125
             ||||||||||||||||||||
Sbjct: 67455 gaaaccaaaaaataaattca 67436



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>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete
               genome
          Length = 3397754

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 429     caggctggatgcccaaaccc 448
               ||||||||||||||||||||
Sbjct: 3269378 caggctggatgcccaaaccc 3269359



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>gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, complete sequence
          Length = 134714

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   acctgaagtccacagcaatg 267
             ||||||||||||||||||||
Sbjct: 66966 acctgaagtccacagcaatg 66947



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>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence
          Length = 216902

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 543    ctccttctcttcttctacca 562
              ||||||||||||||||||||
Sbjct: 204399 ctccttctcttcttctacca 204418



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>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome
          Length = 1044459

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    attgaaagcactgagatggcgata 159
              ||||||||||| ||||||||||||
Sbjct: 800599 attgaaagcacggagatggcgata 800576



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>gb|AC184157.2| Pan troglodytes BAC clone CH251-31B9 from chromosome 15, complete
             sequence
          Length = 167965

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    gtggcatctttgccccagtt 105
             ||||||||||||||||||||
Sbjct: 28800 gtggcatctttgccccagtt 28781



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>gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromosome 15, complete
              sequence
          Length = 177821

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 86     gtggcatctttgccccagtt 105
              ||||||||||||||||||||
Sbjct: 122680 gtggcatctttgccccagtt 122699



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>emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in linkage group 6, complete
              sequence
          Length = 191715

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 181    tttatcactagcaacaacaa 200
              ||||||||||||||||||||
Sbjct: 128811 tttatcactagcaacaacaa 128830



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>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence
          Length = 246921

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 108    aaccaaaaaataaattcatg 127
              ||||||||||||||||||||
Sbjct: 192304 aaccaaaaaataaattcatg 192323



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>gb|AC161864.9| Medicago truncatula clone mth2-69d21, complete sequence
          Length = 133324

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 107    aaaccaaaaaataaattcat 126
              ||||||||||||||||||||
Sbjct: 132012 aaaccaaaaaataaattcat 131993



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>emb|CR628337.1| Legionella pneumophila str. Lens complete genome
          Length = 3345687

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 429     caggctggatgcccaaaccc 448
               ||||||||||||||||||||
Sbjct: 3202642 caggctggatgcccaaaccc 3202623



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>emb|CR628336.1| Legionella pneumophila str. Paris complete genome
          Length = 3503610

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 429     caggctggatgcccaaaccc 448
               ||||||||||||||||||||
Sbjct: 3364535 caggctggatgcccaaaccc 3364516



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>emb|BX510303.6| Zebrafish DNA sequence from clone DKEY-184B7 in linkage group 13,
             complete sequence
          Length = 80122

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 197   acaaacatgcataatctggt 216
             ||||||||||||||||||||
Sbjct: 11722 acaaacatgcataatctggt 11741



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>gb|AC182493.3| Pan troglodytes BAC clone CH251-215H7 from chromosome 15, complete
             sequence
          Length = 156271

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    gtggcatctttgccccagtt 105
             ||||||||||||||||||||
Sbjct: 75658 gtggcatctttgccccagtt 75677



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>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC
              Library) complete sequence
          Length = 183586

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 358    tgaatgaagcgagccgctgcaaag 381
              |||||||||||||| |||||||||
Sbjct: 131454 tgaatgaagcgagcagctgcaaag 131477



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>ref|XM_693199.1| PREDICTED: Danio rerio hypothetical protein LOC569792 (LOC569792),
           mRNA
          Length = 1049

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 107 aaaccaaaaaataaattcat 126
           ||||||||||||||||||||
Sbjct: 850 aaaccaaaaaataaattcat 831



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 106      gaaaccaaaaaataaattca 125
                ||||||||||||||||||||
Sbjct: 12846235 gaaaccaaaaaataaattca 12846254



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>gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J19 map 15q21.1, complete
             sequence
          Length = 175001

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 86    gtggcatctttgccccagtt 105
             ||||||||||||||||||||
Sbjct: 43661 gtggcatctttgccccagtt 43680



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>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome
          Length = 1042519

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 136    attgaaagcactgagatggcgata 159
              ||||||||||| ||||||||||||
Sbjct: 797853 attgaaagcacggagatggcgata 797830



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>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0061E21
          Length = 155085

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 106   gaaaccaaaaaataaattca 125
             ||||||||||||||||||||
Sbjct: 46753 gaaaccaaaaaataaattca 46772



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>emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 in linkage group 20,
              complete sequence
          Length = 221849

 Score = 40.1 bits (20), Expect = 8.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 107    aaaccaaaaaataaattcat 126
              ||||||||||||||||||||
Sbjct: 183169 aaaccaaaaaataaattcat 183188


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,651,642
Number of Sequences: 3902068
Number of extensions: 6651642
Number of successful extensions: 128150
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 127998
Number of HSP's gapped (non-prelim): 152
length of query: 623
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 600
effective length of database: 17,143,297,704
effective search space: 10285978622400
effective search space used: 10285978622400
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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