| Clone Name | rbags5c16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AL670175.12| Mouse DNA sequence from clone RP23-309K20 on chromosome 4, complete sequence Length = 168158 Score = 46.1 bits (23), Expect = 0.14 Identities = 26/27 (96%) Strand = Plus / Plus Query: 245 tgaacctgaagtccacagcaatgtcca 271 |||||||||||||||||||| |||||| Sbjct: 135800 tgaacctgaagtccacagcactgtcca 135826
>gb|AC019216.9|AC019216 Homo sapiens BAC clone RP11-484N11 from 4, complete sequence Length = 160858 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 384 atggtatctatggtcattcttgtctc 409 |||||||||||||||||| ||||||| Sbjct: 152140 atggtatctatggtcatttttgtctc 152165
>gb|AY360390.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0074N12, complete sequence Length = 187972 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gaaaccaaaaaataaattca 125 |||||||||||||||||||| Sbjct: 183414 gaaaccaaaaaataaattca 183433
>gb|AY360389.1| Oryza sativa (japonica cultivar-group) chromosome 8 BAC OSJNBa0024A05, complete sequence Length = 82985 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 106 gaaaccaaaaaataaattca 125 |||||||||||||||||||| Sbjct: 67455 gaaaccaaaaaataaattca 67436
>gb|AE017354.1| Legionella pneumophila subsp. pneumophila str. Philadelphia 1, complete genome Length = 3397754 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 caggctggatgcccaaaccc 448 |||||||||||||||||||| Sbjct: 3269378 caggctggatgcccaaaccc 3269359
>gb|AC119168.10| Mus musculus chromosome 15, clone RP24-341L14, complete sequence Length = 134714 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 248 acctgaagtccacagcaatg 267 |||||||||||||||||||| Sbjct: 66966 acctgaagtccacagcaatg 66947
>gb|AC131719.5| Mus musculus BAC clone RP23-151H15 from chromosome 19, complete sequence Length = 216902 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 ctccttctcttcttctacca 562 |||||||||||||||||||| Sbjct: 204399 ctccttctcttcttctacca 204418
>gb|CP000051.1| Chlamydia trachomatis A/HAR-13, complete genome Length = 1044459 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 attgaaagcactgagatggcgata 159 ||||||||||| |||||||||||| Sbjct: 800599 attgaaagcacggagatggcgata 800576
>gb|AC184157.2| Pan troglodytes BAC clone CH251-31B9 from chromosome 15, complete sequence Length = 167965 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 86 gtggcatctttgccccagtt 105 |||||||||||||||||||| Sbjct: 28800 gtggcatctttgccccagtt 28781
>gb|AC184054.2| Pan troglodytes BAC clone CH251-706J5 from chromosome 15, complete sequence Length = 177821 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtggcatctttgccccagtt 105 |||||||||||||||||||| Sbjct: 122680 gtggcatctttgccccagtt 122699
>emb|BX663614.24| Zebrafish DNA sequence from clone DKEY-148L2 in linkage group 6, complete sequence Length = 191715 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 181 tttatcactagcaacaacaa 200 |||||||||||||||||||| Sbjct: 128811 tttatcactagcaacaacaa 128830
>gb|AC113010.10| Mus musculus chromosome 18, clone RP23-172F6, complete sequence Length = 246921 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 108 aaccaaaaaataaattcatg 127 |||||||||||||||||||| Sbjct: 192304 aaccaaaaaataaattcatg 192323
>gb|AC161864.9| Medicago truncatula clone mth2-69d21, complete sequence Length = 133324 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaaccaaaaaataaattcat 126 |||||||||||||||||||| Sbjct: 132012 aaaccaaaaaataaattcat 131993
>emb|CR628337.1| Legionella pneumophila str. Lens complete genome Length = 3345687 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 caggctggatgcccaaaccc 448 |||||||||||||||||||| Sbjct: 3202642 caggctggatgcccaaaccc 3202623
>emb|CR628336.1| Legionella pneumophila str. Paris complete genome Length = 3503610 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 429 caggctggatgcccaaaccc 448 |||||||||||||||||||| Sbjct: 3364535 caggctggatgcccaaaccc 3364516
>emb|BX510303.6| Zebrafish DNA sequence from clone DKEY-184B7 in linkage group 13, complete sequence Length = 80122 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 acaaacatgcataatctggt 216 |||||||||||||||||||| Sbjct: 11722 acaaacatgcataatctggt 11741
>gb|AC182493.3| Pan troglodytes BAC clone CH251-215H7 from chromosome 15, complete sequence Length = 156271 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtggcatctttgccccagtt 105 |||||||||||||||||||| Sbjct: 75658 gtggcatctttgccccagtt 75677
>gb|AC092562.4| Papio hamadryas BAC RP41-285I13 (Rosewell Park Cancer Institute BAC Library) complete sequence Length = 183586 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 358 tgaatgaagcgagccgctgcaaag 381 |||||||||||||| ||||||||| Sbjct: 131454 tgaatgaagcgagcagctgcaaag 131477
>ref|XM_693199.1| PREDICTED: Danio rerio hypothetical protein LOC569792 (LOC569792), mRNA Length = 1049 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 107 aaaccaaaaaataaattcat 126 |||||||||||||||||||| Sbjct: 850 aaaccaaaaaataaattcat 831
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gaaaccaaaaaataaattca 125 |||||||||||||||||||| Sbjct: 12846235 gaaaccaaaaaataaattca 12846254
>gb|AC066615.7|AC066615 Homo sapiens chromosome 15 clone RP11-90J19 map 15q21.1, complete sequence Length = 175001 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 86 gtggcatctttgccccagtt 105 |||||||||||||||||||| Sbjct: 43661 gtggcatctttgccccagtt 43680
>gb|AE001273.1| Chlamydia trachomatis D/UW-3/CX, complete genome Length = 1042519 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 136 attgaaagcactgagatggcgata 159 ||||||||||| |||||||||||| Sbjct: 797853 attgaaagcacggagatggcgata 797830
>dbj|AP005693.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0061E21 Length = 155085 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 106 gaaaccaaaaaataaattca 125 |||||||||||||||||||| Sbjct: 46753 gaaaccaaaaaataaattca 46772
>emb|BX293568.7| Zebrafish DNA sequence from clone CH211-215F13 in linkage group 20, complete sequence Length = 221849 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 107 aaaccaaaaaataaattcat 126 |||||||||||||||||||| Sbjct: 183169 aaaccaaaaaataaattcat 183188 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,651,642 Number of Sequences: 3902068 Number of extensions: 6651642 Number of successful extensions: 128150 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 24 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 127998 Number of HSP's gapped (non-prelim): 152 length of query: 623 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 600 effective length of database: 17,143,297,704 effective search space: 10285978622400 effective search space used: 10285978622400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)