ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5c12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y829_SYNY3 (Q55423) Putative methyltransferase sll0829 (EC 2.1.1.-) 33 0.66
2GR43B_DROME (Q9V4Q0) Putative chemosensory receptor 43b 33 1.1

>Y829_SYNY3 (Q55423) Putative methyltransferase sll0829 (EC 2.1.1.-)|
          Length = 212

 Score = 33.5 bits (75), Expect = 0.66
 Identities = 25/63 (39%), Positives = 33/63 (52%)
 Frame = -2

Query: 539 HTSYALHQGLYCLVQLIYLMMVKVLRYFLTIALHALHRYSTFVNWELWWPQFPILVYFKE 360
           HTS ALH+     +Q I   + +VL+     AL  LHR S   NW L+WP   I +   E
Sbjct: 111 HTSVALHEMTPAQLQSIISGVHRVLKPGGIFALVDLHRPS---NW-LFWPPLAIFMGLFE 166

Query: 359 TQT 351
           T+T
Sbjct: 167 TET 169



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>GR43B_DROME (Q9V4Q0) Putative chemosensory receptor 43b|
          Length = 430

 Score = 32.7 bits (73), Expect = 1.1
 Identities = 20/55 (36%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
 Frame = -2

Query: 584 QVRTYLLVARTVGSKHTSYALHQGLYCLVQLIYLMMV----KVLRYFLTIALHAL 432
           +VR +LL+A  + ++HTS  +HQ L  L  +I L +      V+ Y +T+ L AL
Sbjct: 356 KVRPHLLIAMVLENEHTSLIIHQKLKPLENMIILDITCDREFVMDYIVTVILTAL 410


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 107,164,668
Number of Sequences: 219361
Number of extensions: 2306285
Number of successful extensions: 5594
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5594
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7252940416
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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