>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 32.7 bits (73), Expect = 0.93
 Identities = 21/61 (34%), Positives = 29/61 (47%)
 Frame = +2

Query: 353  PLYGHFTAKRHETPSRLDPGTS*SLGFTRLPFASPPSRTSFEYKQGGTAWSPTFATYSRS 532
            P YG  +   +   ++  P  + S    RL  ASP S TS  Y     ++SPT  +YS S
Sbjct: 1718 PSYGPTSPSYNPQSAKYSPSIAYSPSNARLSPASPYSPTSPNYSPTSPSYSPTSPSYSPS 1777

Query: 533  S 535
            S
Sbjct: 1778 S 1778

>FINC_RAT (P04937) Fibronectin precursor (FN)|
          Length = 2477

 Score = 25.4 bits (54), Expect(2) = 4.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237  SAPTRSRLAPRPSITAKDEDEDQNHKTNTDTHYSM-PH 347
            +A T  RL PRP +   DE+    H    D  Y + PH
Sbjct: 2154 TAATPVRLRPRPYLPNVDEEVQIGHVPRGDVDYHLYPH 2191



 Score = 23.5 bits (49), Expect(2) = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 441  FHLHRHHPGLRLNISRGAQ 497
            +HL+ H PGL  N S G +
Sbjct: 2186 YHLYPHVPGLNPNASTGQE 2204

>FINC_MOUSE (P11276) Fibronectin precursor (FN)|
          Length = 2477

 Score = 25.4 bits (54), Expect(2) = 4.1
 Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
 Frame = +3

Query: 237  SAPTRSRLAPRPSITAKDEDEDQNHKTNTDTHYSM-PH 347
            +A T  RL PRP +   DE+    H    D  Y + PH
Sbjct: 2154 TAATPVRLRPRPYLPNVDEEVQIGHVPRGDVDYHLYPH 2191



 Score = 23.5 bits (49), Expect(2) = 4.1
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 441  FHLHRHHPGLRLNISRGAQ 497
            +HL+ H PGL  N S G +
Sbjct: 2186 YHLYPHVPGLNPNASTGQE 2204

>ATRIP_MACFA (Q9N077) ATR-interacting protein (ATM and Rad3-related-interacting|
           protein) (Fragment)
          Length = 655

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
 Frame = +3

Query: 183 KVTELRSNSIVSQSVEYISAPTRSRLAPR--PSITAKDED-EDQNHKTNTDT------HY 335
           ++ ELR+    S+    ++AP+ S ++PR  PS+  K E    Q  KT+  T      + 
Sbjct: 63  EMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANM 122

Query: 336 SMPHACRYTDTLQRNGMKLLLG 401
           S+PH C+       +G K L+G
Sbjct: 123 SLPHPCQ-----TESGYKPLVG 139

>ATRIP_HUMAN (Q8WXE1) ATR-interacting protein (ATM and Rad3-related-interacting|
           protein)
          Length = 791

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
 Frame = +3

Query: 183 KVTELRSNSIVSQSVEYISAPTRSRLAPR--PSITAKDED-EDQNHKTNTDT------HY 335
           ++ ELR+    S+    ++AP+ S ++PR  PS+  K E    Q  KT+  T      + 
Sbjct: 198 EMNELRTKLQTSERANKLAAPSVSHVSPRKNPSVVIKPEACSPQFGKTSFPTKESFSANM 257

Query: 336 SMPHACRYTDTLQRNGMKLLLG 401
           S+PH C+       +G K L+G
Sbjct: 258 SLPHPCQ-----TESGYKPLVG 274

>UB2Q1_MOUSE (Q7TSS2) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1)
          Length = 422

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 153 HLCAIMTTGCKVTELRSNSIVSQSVEYISAPTRSRLAPRPSITAKDEDEDQNHKTNTDTH 332
           HL  I++  CK+  L  +      VE +  P  +    +  ++++DEDE+    T    H
Sbjct: 148 HLKRIISDLCKLYNLPQHP----DVEMLDQPLPAEQCTQEEVSSEDEDEEMPEDTEDLDH 203

Query: 333 YSM 341
           Y M
Sbjct: 204 YEM 206

>UB2Q1_HUMAN (Q7Z7E8) Ubiquitin-conjugating enzyme E2 Q1 (EC 6.3.2.19)|
           (Ubiquitin-protein ligase Q1) (Ubiquitin carrier protein
           Q1) (Protein NICE-5)
          Length = 422

 Score = 30.0 bits (66), Expect = 6.0
 Identities = 17/63 (26%), Positives = 29/63 (46%)
 Frame = +3

Query: 153 HLCAIMTTGCKVTELRSNSIVSQSVEYISAPTRSRLAPRPSITAKDEDEDQNHKTNTDTH 332
           HL  I++  CK+  L  +      VE +  P  +    +  ++++DEDE+    T    H
Sbjct: 148 HLKRIISDLCKLYNLPQHP----DVEMLDQPLPAEQCTQEDVSSEDEDEEMPEDTEDLDH 203

Query: 333 YSM 341
           Y M
Sbjct: 204 YEM 206


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,201,012
Number of Sequences: 219361
Number of extensions: 1915823
Number of successful extensions: 5342
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5000
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5328
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 5972710590
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)