ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4n05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_479385.1| Oryza sativa (japonica cultivar-group), mRNA 218 2e-53
2dbj|AK073258.1| Oryza sativa (japonica cultivar-group) cDNA clon... 218 2e-53
3gb|BT019317.1| Zea mays clone Contig1000.F mRNA sequence 194 2e-46
4gb|AY104286.1| Zea mays PCO106936 mRNA sequence 186 6e-44
5dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
6dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic D... 174 2e-40
7ref|XM_628390.1| Cryptosporidium parvum Iowa II hypothetical pro... 44 0.56
8gb|AC151967.6| Mus musculus BAC clone RP24-235L23 from chromosom... 42 2.2
9gb|AC120559.10| Mus musculus chromosome 9, clone RP24-566A4, com... 42 2.2
10gb|AC165156.3| Mus musculus BAC clone RP23-298I7 from chromosome... 42 2.2
11emb|AJ851679.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.2
12emb|AJ851589.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.2
13emb|AJ719749.1| Gallus gallus mRNA for hypothetical protein, clo... 42 2.2
14gb|AC078922.14| Homo sapiens 12q BAC RP11-611E13 (Roswell Park C... 42 2.2
15gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park C... 42 2.2
16gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswel... 42 2.2
17gb|AC103882.5| Homo sapiens BAC clone RP11-733G6 from 2, complet... 42 2.2
18ref|NM_001012532.1| Gallus gallus euchromatic histone methyltran... 42 2.2
19emb|CT009720.16| Mouse DNA sequence from clone RP23-21J17 on chr... 42 2.2
20gb|AC132609.3| Mus musculus BAC clone RP23-351O8 from 12, comple... 42 2.2
21gb|AE017130.1| Yersinia pestis biovar Medievalis str. 91001 sect... 40 8.7
22gb|AC137978.8| Mus musculus chromosome 1, clone RP24-468M12, com... 40 8.7
23gb|AC087213.2| Rattus norvegicus strain Brown Norway clone RP31-... 40 8.7
24gb|AE009952.1| Yersinia pestis KIM, complete genome 40 8.7
25gb|AC087363.17| Homo sapiens chromosome 8, clone RP11-529P14, co... 40 8.7
26emb|AL513243.1| Human DNA sequence from clone RP11-453F18 on chr... 40 8.7
27emb|AL158831.15| Human DNA sequence from clone RP11-564A4 on chr... 40 8.7
28emb|AL133329.11| Human DNA sequence from clone RP11-524P6 on chr... 40 8.7
29gb|AC157794.3| Mus musculus chromosome 1, clone RP24-111L14, com... 40 8.7
30emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, comp... 40 8.7
31emb|AL606805.21| Mouse DNA sequence from clone RP23-449F16 on ch... 40 8.7
32emb|AJ414146.1| Yersinia pestis strain CO92 complete genome; seg... 40 8.7
33emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 ... 40 8.7
34gb|DQ099104.1| Arachis stenosperma clone AS1RN20C10 microsatelli... 40 8.7
35gb|AC072051.8| Homo sapiens chromosome , clone RP11-79D21, compl... 40 8.7
36gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, co... 40 8.7
37gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold 40 8.7
38gb|AC129925.12| Homo sapiens chromosome 8, clone RP11-640H15, co... 40 8.7
39gb|AC009802.13|AC009802 Homo sapiens chromosome 18, clone RP11-7... 40 8.7
40emb|CR753897.9| Zebrafish DNA sequence from clone CH211-219A15 i... 40 8.7
41emb|BX572633.7| Zebrafish DNA sequence from clone CH211-276P10 i... 40 8.7
42gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, com... 40 8.7
43gb|M31548.1|HUMUKI3 Human urokinase inhibitor (PAI-2) gene, exon... 40 8.7 
>ref|XM_479385.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1768

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                        
Query: 428  ggtttcacacgtcttccatttgcatcgccaccatccaggacttcgtttgaatataagcag 487
            |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 1563 ggtttcacacgtcttccattggcatcgccaccatcaaggacttcgttcgaatacaagcag 1504

                                                                        
Query: 488  gggggcacagcgtggtctcctaccttcgcaacatactccagaagctcggtcaggagtgaa 547
            |||  ||| |  || || |||||||| || ||||||||||||||||||||||| |  || 
Sbjct: 1503 gggctcaccgaatgctcccctaccttggccacatactccagaagctcggtcagcaaggat 1444

                                                                        
Query: 548  gggcagctttgctgcaaataatcgaatccttcggtttgcatgacagctttcaaattctcc 607
            ||||||||||||||||||||||| || || |||||||||||||||||||| |||||||| 
Sbjct: 1443 gggcagctttgctgcaaataatcaaacccatcggtttgcatgacagcttttaaattctca 1384

                                              
Query: 608  ggcgaggccacaaatttcaagcaaacagttttta 641
            ||| | ||||||||| ||| ||||||||||||||
Sbjct: 1383 ggcaaagccacaaatctcaggcaaacagttttta 1350
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>dbj|AK073258.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033024L05, full
            insert sequence
          Length = 1768

 Score =  218 bits (110), Expect = 2e-53
 Identities = 188/214 (87%)
 Strand = Plus / Minus

                                                                        
Query: 428  ggtttcacacgtcttccatttgcatcgccaccatccaggacttcgtttgaatataagcag 487
            |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 1563 ggtttcacacgtcttccattggcatcgccaccatcaaggacttcgttcgaatacaagcag 1504

                                                                        
Query: 488  gggggcacagcgtggtctcctaccttcgcaacatactccagaagctcggtcaggagtgaa 547
            |||  ||| |  || || |||||||| || ||||||||||||||||||||||| |  || 
Sbjct: 1503 gggctcaccgaatgctcccctaccttggccacatactccagaagctcggtcagcaaggat 1444

                                                                        
Query: 548  gggcagctttgctgcaaataatcgaatccttcggtttgcatgacagctttcaaattctcc 607
            ||||||||||||||||||||||| || || |||||||||||||||||||| |||||||| 
Sbjct: 1443 gggcagctttgctgcaaataatcaaacccatcggtttgcatgacagcttttaaattctca 1384

                                              
Query: 608  ggcgaggccacaaatttcaagcaaacagttttta 641
            ||| | ||||||||| ||| ||||||||||||||
Sbjct: 1383 ggcaaagccacaaatctcaggcaaacagttttta 1350
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>gb|BT019317.1| Zea mays clone Contig1000.F mRNA sequence
          Length = 626

 Score =  194 bits (98), Expect = 2e-46
 Identities = 188/218 (86%)
 Strand = Plus / Minus

                                                                       
Query: 424 ccttggtttcacacgtcttccatttgcatcgccaccatccaggacttcgtttgaatataa 483
           |||||||||||| |||| |||||| ||||| |||||||| ||||||||  ||||||| | 
Sbjct: 352 ccttggtttcacgcgtcgtccattggcatctccaccatcaaggacttcagttgaatacag 293

                                                                       
Query: 484 gcaggggggcacagcgtggtctcctaccttcgcaacatactccagaagctcggtcaggag 543
           |||||||  ||| | ||| ||||||| ||| || ||||| || |||||||||||||||||
Sbjct: 292 gcaggggctcacggagtgctctcctatcttggccacatattcaagaagctcggtcaggag 233

                                                                       
Query: 544 tgaagggcagctttgctgcaaataatcgaatccttcggtttgcatgacagctttcaaatt 603
            || || |||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 232 ggatggacagctttgctgcaaataatcaaacccatcggtttgcatgacagctttcaaatt 173

                                                 
Query: 604 ctccggcgaggccacaaatttcaagcaaacagttttta 641
           ||| |||   ||||||||||| ||||||||||||||||
Sbjct: 172 ctcaggcagagccacaaattttaagcaaacagttttta 135
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>gb|AY104286.1| Zea mays PCO106936 mRNA sequence
          Length = 1115

 Score =  186 bits (94), Expect = 6e-44
 Identities = 187/218 (85%)
 Strand = Plus / Minus

                                                                       
Query: 424 ccttggtttcacacgtcttccatttgcatcgccaccatccaggacttcgtttgaatataa 483
           |||||||||||| ||||  ||||| ||||| ||||| || ||||||||  ||||||| ||
Sbjct: 800 ccttggtttcacgcgtcgcccattggcatcaccaccgtcaaggacttcagttgaatacaa 741

                                                                       
Query: 484 gcaggggggcacagcgtggtctcctaccttcgcaacatactccagaagctcggtcaggag 543
           |||||||  ||| | ||| |||||| |||| || |||||||| |||||||||||||||||
Sbjct: 740 gcaggggctcacggagtgctctcctgccttggccacatactcgagaagctcggtcaggag 681

                                                                       
Query: 544 tgaagggcagctttgctgcaaataatcgaatccttcggtttgcatgacagctttcaaatt 603
            || ||||||||||| ||||||||||| || || ||||||||||||||||||||||||||
Sbjct: 680 ggatgggcagctttgttgcaaataatcaaacccatcggtttgcatgacagctttcaaatt 621

                                                 
Query: 604 ctccggcgaggccacaaatttcaagcaaacagttttta 641
            || |||   || |||||||||||||||||||||||||
Sbjct: 620 ttcaggcagagctacaaatttcaagcaaacagttttta 583
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                            
Query: 428      ggtttcacacgtcttccatttgcatcgccaccatccaggacttcgtttgaatataagcag 487
                |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 27496401 ggtttcacacgtcttccattggcatcgccaccatcaaggacttcgttcgaatacaagcag 27496342

                                                                            
Query: 488      gggggcacagcgtggtctcctaccttcgcaacatactccagaagctcggtcaggagtgaa 547
                |||  ||| |  || || |||||||| || ||||||||||||||||||||||| |  || 
Sbjct: 27496341 gggctcaccgaatgctcccctaccttggccacatactccagaagctcggtcagcaaggat 27496282

                                                                
Query: 548      gggcagctttgctgcaaataatcgaatccttcggtttgcatgacagct 595
                ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 27496281 gggcagctttgctgcaaataatcaaacccatcggtttgcatgacagct 27496234



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                                
Query: 594      ctttcaaattctccggcgaggccacaaatttcaagcaaacagttttta 641
                |||| |||||||| ||| | ||||||||| ||| ||||||||||||||
Sbjct: 27495251 cttttaaattctcaggcaaagccacaaatctcaggcaaacagttttta 27495204
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>dbj|AP005182.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0018C07
          Length = 141707

 Score =  174 bits (88), Expect = 2e-40
 Identities = 148/168 (88%)
 Strand = Plus / Minus

                                                                         
Query: 428   ggtttcacacgtcttccatttgcatcgccaccatccaggacttcgtttgaatataagcag 487
             |||||||||||||||||||| |||||||||||||| ||||||||||| ||||| ||||||
Sbjct: 60372 ggtttcacacgtcttccattggcatcgccaccatcaaggacttcgttcgaatacaagcag 60313

                                                                         
Query: 488   gggggcacagcgtggtctcctaccttcgcaacatactccagaagctcggtcaggagtgaa 547
             |||  ||| |  || || |||||||| || ||||||||||||||||||||||| |  || 
Sbjct: 60312 gggctcaccgaatgctcccctaccttggccacatactccagaagctcggtcagcaaggat 60253

                                                             
Query: 548   gggcagctttgctgcaaataatcgaatccttcggtttgcatgacagct 595
             ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 60252 gggcagctttgctgcaaataatcaaacccatcggtttgcatgacagct 60205



 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 594   ctttcaaattctccggcgaggccacaaatttcaagcaaacagttttta 641
             |||| |||||||| ||| | ||||||||| ||| ||||||||||||||
Sbjct: 59222 cttttaaattctcaggcaaagccacaaatctcaggcaaacagttttta 59175
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>ref|XM_628390.1| Cryptosporidium parvum Iowa II hypothetical protein (cgd7_2180),
           partial mRNA
          Length = 858

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                     
Query: 616 cacaaatttcaagcaaacagttttta 641
           ||||||||||||||||||||| ||||
Sbjct: 334 cacaaatttcaagcaaacagtcttta 309
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>gb|AC151967.6| Mus musculus BAC clone RP24-235L23 from chromosome 12, complete
             sequence
          Length = 184240

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 310   acaagacaaacaccgatacacatta 334
             |||||||||||||| ||||||||||
Sbjct: 36283 acaagacaaacaccaatacacatta 36259
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>gb|AC120559.10| Mus musculus chromosome 9, clone RP24-566A4, complete sequence
          Length = 141300

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 215   aagccagtcagttgaatatat 235
             |||||||||||||||||||||
Sbjct: 33279 aagccagtcagttgaatatat 33259
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>gb|AC165156.3| Mus musculus BAC clone RP23-298I7 from chromosome 9, complete sequence
          Length = 198962

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 215   aagccagtcagttgaatatat 235
             |||||||||||||||||||||
Sbjct: 37388 aagccagtcagttgaatatat 37408
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>emb|AJ851679.1| Gallus gallus mRNA for hypothetical protein, clone 17b18
          Length = 5463

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 403  tgacccagggaccagttaaag 423
            |||||||||||||||||||||
Sbjct: 2009 tgacccagggaccagttaaag 2029
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>emb|AJ851589.1| Gallus gallus mRNA for hypothetical protein, clone 9f4
          Length = 4162

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 403  tgacccagggaccagttaaag 423
            |||||||||||||||||||||
Sbjct: 1036 tgacccagggaccagttaaag 1056
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>emb|AJ719749.1| Gallus gallus mRNA for hypothetical protein, clone 6a18
          Length = 3750

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 403 tgacccagggaccagttaaag 423
           |||||||||||||||||||||
Sbjct: 861 tgacccagggaccagttaaag 881
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>gb|AC078922.14| Homo sapiens 12q BAC RP11-611E13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 181000

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 259   tagcaccacggcctagcatca 279
             |||||||||||||||||||||
Sbjct: 61765 tagcaccacggcctagcatca 61785
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>gb|AC025159.28| Homo sapiens 12 BAC RP11-1082K22 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 209961

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   tagcaccacggcctagcatca 279
             |||||||||||||||||||||
Sbjct: 37183 tagcaccacggcctagcatca 37163
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>gb|AC024942.18|AC024942 Homo sapiens 12 BAC RP11-1115M13 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 146120

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 259   tagcaccacggcctagcatca 279
             |||||||||||||||||||||
Sbjct: 18264 tagcaccacggcctagcatca 18244
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>gb|AC103882.5| Homo sapiens BAC clone RP11-733G6 from 2, complete sequence
          Length = 159249

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 286   aggatgaggatgaagatcaga 306
             |||||||||||||||||||||
Sbjct: 63339 aggatgaggatgaagatcaga 63319
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>ref|NM_001012532.1| Gallus gallus euchromatic histone methyltransferase 1 (EHMT1), mRNA
          Length = 5463

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 403  tgacccagggaccagttaaag 423
            |||||||||||||||||||||
Sbjct: 2009 tgacccagggaccagttaaag 2029
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>emb|CT009720.16| Mouse DNA sequence from clone RP23-21J17 on chromosome 9, complete
              sequence
          Length = 216098

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 215    aagccagtcagttgaatatat 235
              |||||||||||||||||||||
Sbjct: 179217 aagccagtcagttgaatatat 179237
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>gb|AC132609.3| Mus musculus BAC clone RP23-351O8 from 12, complete sequence
          Length = 200045

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 310    acaagacaaacaccgatacacatta 334
              |||||||||||||| ||||||||||
Sbjct: 123317 acaagacaaacaccaatacacatta 123293
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>gb|AE017130.1| Yersinia pestis biovar Medievalis str. 91001 section 4 of 16 of the
              complete genome
          Length = 290510

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 264    ccacggcctagcatcacggc 283
              ||||||||||||||||||||
Sbjct: 167958 ccacggcctagcatcacggc 167977
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>gb|AC137978.8| Mus musculus chromosome 1, clone RP24-468M12, complete sequence
          Length = 181633

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 179   ctgcaaagtaacagagcttc 198
             ||||||||||||||||||||
Sbjct: 78376 ctgcaaagtaacagagcttc 78357
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>gb|AC087213.2| Rattus norvegicus strain Brown Norway clone RP31-422M21, complete
             sequence
          Length = 64575

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 544   tgaagggcagctttgctgca 563
             ||||||||||||||||||||
Sbjct: 32373 tgaagggcagctttgctgca 32354
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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 264     ccacggcctagcatcacggc 283
               ||||||||||||||||||||
Sbjct: 3323831 ccacggcctagcatcacggc 3323850
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>gb|AC087363.17| Homo sapiens chromosome 8, clone RP11-529P14, complete sequence
          Length = 174028

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 7      acatcatttcaattcaatacaata 30
              |||||||||||||||||| |||||
Sbjct: 137619 acatcatttcaattcaattcaata 137642
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>emb|AL513243.1| Human DNA sequence from clone RP11-453F18 on chromosome Xq25-26.3
            Contains the 3' end of gene LOC286467, complete sequence
          Length = 58976

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 410  gggaccagttaaagccttgg 429
            ||||||||||||||||||||
Sbjct: 1266 gggaccagttaaagccttgg 1285
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>emb|AL158831.15| Human DNA sequence from clone RP11-564A4 on chromosome 9, complete
             sequence
          Length = 162700

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 286   aggatgaggatgaagatcag 305
             ||||||||||||||||||||
Sbjct: 42596 aggatgaggatgaagatcag 42615
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>emb|AL133329.11| Human DNA sequence from clone RP11-524P6 on chromosome Xp11.3-21.1
             Contains a novel gene, complete sequence
          Length = 109508

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 615   ccacaaatttcaagcaaaca 634
             ||||||||||||||||||||
Sbjct: 18306 ccacaaatttcaagcaaaca 18325
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>gb|AC157794.3| Mus musculus chromosome 1, clone RP24-111L14, complete sequence
          Length = 157029

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 179    ctgcaaagtaacagagcttc 198
              ||||||||||||||||||||
Sbjct: 111829 ctgcaaagtaacagagcttc 111848
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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 264     ccacggcctagcatcacggc 283
               ||||||||||||||||||||
Sbjct: 1450957 ccacggcctagcatcacggc 1450938
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>emb|AL606805.21| Mouse DNA sequence from clone RP23-449F16 on chromosome 11 Contains the
              5' end of the Lpo gene for lactoperoxidase, a novel gene,
              the Epx gene for eosinophil peroxidase, the Olfr462,
              Olfr463 and Olfr464 genes for olfactory receptors 462, 463
              and 464, a novel gene, a cytochrome c oxidase subunit VIc
              (Cox6c) pseudogene, a ubiquitin-conjugating enzyme E2B (S.
              cerevisiae RAD6 homology) (Ube2b) pseudogene and the 3' end
              of the gene for dynein light chain 2 (6720463E02Rik),
              complete sequence
          Length = 184069

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 21     caatacaatacacatcatgcagac 44
              |||||||||||||||||| |||||
Sbjct: 144224 caatacaatacacatcatacagac 144201
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>emb|AJ414146.1| Yersinia pestis strain CO92 complete genome; segment 6/20
          Length = 210050

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 264    ccacggcctagcatcacggc 283
              ||||||||||||||||||||
Sbjct: 205050 ccacggcctagcatcacggc 205031
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>emb|BX322662.12| Zebrafish DNA sequence from clone CH211-222C18 in linkage group 23,
             complete sequence
          Length = 209409

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 274   gcatcacggctaaggatgag 293
             ||||||||||||||||||||
Sbjct: 56187 gcatcacggctaaggatgag 56168
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>gb|DQ099104.1| Arachis stenosperma clone AS1RN20C10 microsatellite sequence
          Length = 790

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 440 cttccatttgcatcgccacc 459
           ||||||||||||||||||||
Sbjct: 274 cttccatttgcatcgccacc 293
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>gb|AC072051.8| Homo sapiens chromosome , clone RP11-79D21, complete sequence
          Length = 157284

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 616   cacaaatttcaagcaaacagtttt 639
             ||||||||||||| ||||||||||
Sbjct: 33686 cacaaatttcaagtaaacagtttt 33663
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>gb|AC129933.13| Mus musculus chromosome 1, clone RP23-234P14, complete sequence
          Length = 247595

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 179    ctgcaaagtaacagagcttc 198
              ||||||||||||||||||||
Sbjct: 239375 ctgcaaagtaacagagcttc 239356
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>gb|DP000027.1| Rattus norvegicus target 1 genomic scaffold
          Length = 1888123

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 544     tgaagggcagctttgctgca 563
               ||||||||||||||||||||
Sbjct: 1163776 tgaagggcagctttgctgca 1163757
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>gb|AC129925.12| Homo sapiens chromosome 8, clone RP11-640H15, complete sequence
          Length = 74845

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     acatcatttcaattcaatacaata 30
             |||||||||||||||||| |||||
Sbjct: 21478 acatcatttcaattcaattcaata 21501
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>gb|AC009802.13|AC009802 Homo sapiens chromosome 18, clone RP11-793J2, complete sequence
          Length = 191395

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 616    cacaaatttcaagcaaacagtttt 639
              ||||||||||||| ||||||||||
Sbjct: 171369 cacaaatttcaagtaaacagtttt 171346
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>emb|CR753897.9| Zebrafish DNA sequence from clone CH211-219A15 in linkage group 18,
             complete sequence
          Length = 124389

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 317   aaacaccgatacacattacagcat 340
             ||||||||||||||||| ||||||
Sbjct: 58191 aaacaccgatacacatttcagcat 58214
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>emb|BX572633.7| Zebrafish DNA sequence from clone CH211-276P10 in linkage group 18,
              complete sequence
          Length = 184987

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 317    aaacaccgatacacattacagcat 340
              ||||||||||||||||| ||||||
Sbjct: 142064 aaacaccgatacacatttcagcat 142041
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>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence
          Length = 179805

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 278   cacggctaaggatgaggatg 297
             ||||||||||||||||||||
Sbjct: 62490 cacggctaaggatgaggatg 62471
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>gb|M31548.1|HUMUKI3 Human urokinase inhibitor (PAI-2) gene, exons 3-5
          Length = 3295

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 616  cacaaatttcaagcaaacagtttt 639
            ||||||||||||| ||||||||||
Sbjct: 2000 cacaaatttcaagtaaacagtttt 2023


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,016,477
Number of Sequences: 3902068
Number of extensions: 5016477
Number of successful extensions: 89844
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89678
Number of HSP's gapped (non-prelim): 162
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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