ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4n04 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_470327.1| Oryza sativa (japonica cultivar-group), mRNA Length = 4045 Score = 161 bits (81), Expect = 4e-36 Identities = 196/233 (84%), Gaps = 1/233 (0%) Strand = Plus / Minus Query: 263 aggacgcatcctgttcctaacatacattgccatcgaatagacacctaatagagcaatcgt 322 |||| |||||||||||| | |||||||| ||| ||| ||||||||||||| |||||| | Sbjct: 3600 aggatgcatcctgttccataaatacattgtcattgaacagacacctaatagggcaatctt 3541 Query: 323 cagatgctctgaactgttggccttgatgctcactcgtccagttagcttgttgttcaaatc 382 || |||||||| | || ||||| ||||| || |||||||||| |||||| ||||||| Sbjct: 3540 caactgctctgatgtattagcctttatgctgacccgtccagttaatttgttggtcaaatc 3481 Query: 383 aacatgaactgccatgtttgaagtccttcccacagagaactgggtatccaagtttgcagc 442 ||||||||| |||| |||||||| ||||||| ||||||||||| |||||| ||||||| Sbjct: 3480 aacatgaacagccacgtttgaagctcttcccatagagaactgggaatccaactttgcag- 3422 Query: 443 ccgtagtccattctttatgccaccttaccagtgatgcacccaaagttgcaagg 495 || | |||||||||||||||| || ||||| ||||| |||||| |||||||| Sbjct: 3421 ccatgctccattctttatgccatctaaccagggatgctcccaaaattgcaagg 3369
>ref|XM_506907.1| PREDICTED Oryza sativa (japonica cultivar-group), OSJNBa0096I06.18 patrial mRNA Length = 4167 Score = 161 bits (81), Expect = 4e-36 Identities = 196/233 (84%), Gaps = 1/233 (0%) Strand = Plus / Minus Query: 263 aggacgcatcctgttcctaacatacattgccatcgaatagacacctaatagagcaatcgt 322 |||| |||||||||||| | |||||||| ||| ||| ||||||||||||| |||||| | Sbjct: 3600 aggatgcatcctgttccataaatacattgtcattgaacagacacctaatagggcaatctt 3541 Query: 323 cagatgctctgaactgttggccttgatgctcactcgtccagttagcttgttgttcaaatc 382 || |||||||| | || ||||| ||||| || |||||||||| |||||| ||||||| Sbjct: 3540 caactgctctgatgtattagcctttatgctgacccgtccagttaatttgttggtcaaatc 3481 Query: 383 aacatgaactgccatgtttgaagtccttcccacagagaactgggtatccaagtttgcagc 442 ||||||||| |||| |||||||| ||||||| ||||||||||| |||||| ||||||| Sbjct: 3480 aacatgaacagccacgtttgaagctcttcccatagagaactgggaatccaactttgcag- 3422 Query: 443 ccgtagtccattctttatgccaccttaccagtgatgcacccaaagttgcaagg 495 || | |||||||||||||||| || ||||| ||||| |||||| |||||||| Sbjct: 3421 ccatgctccattctttatgccatctaaccagggatgctcccaaaattgcaagg 3369
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 161 bits (81), Expect = 4e-36 Identities = 196/233 (84%), Gaps = 1/233 (0%) Strand = Plus / Minus Query: 263 aggacgcatcctgttcctaacatacattgccatcgaatagacacctaatagagcaatcgt 322 |||| |||||||||||| | |||||||| ||| ||| ||||||||||||| |||||| | Sbjct: 34784485 aggatgcatcctgttccataaatacattgtcattgaacagacacctaatagggcaatctt 34784426 Query: 323 cagatgctctgaactgttggccttgatgctcactcgtccagttagcttgttgttcaaatc 382 || |||||||| | || ||||| ||||| || |||||||||| |||||| ||||||| Sbjct: 34784425 caactgctctgatgtattagcctttatgctgacccgtccagttaatttgttggtcaaatc 34784366 Query: 383 aacatgaactgccatgtttgaagtccttcccacagagaactgggtatccaagtttgcagc 442 ||||||||| |||| |||||||| ||||||| ||||||||||| |||||| ||||||| Sbjct: 34784365 aacatgaacagccacgtttgaagctcttcccatagagaactgggaatccaactttgcag- 34784307 Query: 443 ccgtagtccattctttatgccaccttaccagtgatgcacccaaagttgcaagg 495 || | |||||||||||||||| || ||||| ||||| |||||| |||||||| Sbjct: 34784306 ccatgctccattctttatgccatctaaccagggatgctcccaaaattgcaagg 34784254
>gb|AC092557.7| Oryza sativa chromosome 3 BAC OSJNBa0096I06 genomic sequence, complete sequence Length = 164352 Score = 161 bits (81), Expect = 4e-36 Identities = 196/233 (84%), Gaps = 1/233 (0%) Strand = Plus / Plus Query: 263 aggacgcatcctgttcctaacatacattgccatcgaatagacacctaatagagcaatcgt 322 |||| |||||||||||| | |||||||| ||| ||| ||||||||||||| |||||| | Sbjct: 78165 aggatgcatcctgttccataaatacattgtcattgaacagacacctaatagggcaatctt 78224 Query: 323 cagatgctctgaactgttggccttgatgctcactcgtccagttagcttgttgttcaaatc 382 || |||||||| | || ||||| ||||| || |||||||||| |||||| ||||||| Sbjct: 78225 caactgctctgatgtattagcctttatgctgacccgtccagttaatttgttggtcaaatc 78284 Query: 383 aacatgaactgccatgtttgaagtccttcccacagagaactgggtatccaagtttgcagc 442 ||||||||| |||| |||||||| ||||||| ||||||||||| |||||| ||||||| Sbjct: 78285 aacatgaacagccacgtttgaagctcttcccatagagaactgggaatccaactttgcag- 78343 Query: 443 ccgtagtccattctttatgccaccttaccagtgatgcacccaaagttgcaagg 495 || | |||||||||||||||| || ||||| ||||| |||||| |||||||| Sbjct: 78344 ccatgctccattctttatgccatctaaccagggatgctcccaaaattgcaagg 78396
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 161 bits (81), Expect = 4e-36 Identities = 196/233 (84%), Gaps = 1/233 (0%) Strand = Plus / Minus Query: 263 aggacgcatcctgttcctaacatacattgccatcgaatagacacctaatagagcaatcgt 322 |||| |||||||||||| | |||||||| ||| ||| ||||||||||||| |||||| | Sbjct: 34874557 aggatgcatcctgttccataaatacattgtcattgaacagacacctaatagggcaatctt 34874498 Query: 323 cagatgctctgaactgttggccttgatgctcactcgtccagttagcttgttgttcaaatc 382 || |||||||| | || ||||| ||||| || |||||||||| |||||| ||||||| Sbjct: 34874497 caactgctctgatgtattagcctttatgctgacccgtccagttaatttgttggtcaaatc 34874438 Query: 383 aacatgaactgccatgtttgaagtccttcccacagagaactgggtatccaagtttgcagc 442 ||||||||| |||| |||||||| ||||||| ||||||||||| |||||| ||||||| Sbjct: 34874437 aacatgaacagccacgtttgaagctcttcccatagagaactgggaatccaactttgcag- 34874379 Query: 443 ccgtagtccattctttatgccaccttaccagtgatgcacccaaagttgcaagg 495 || | |||||||||||||||| || ||||| ||||| |||||| |||||||| Sbjct: 34874378 ccatgctccattctttatgccatctaaccagggatgctcccaaaattgcaagg 34874326
>gb|AC124427.5| Mus musculus BAC clone RP24-232N5 from chromosome 8, complete sequence Length = 205525 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 392 tgccatgtttgaagtccttcc 412 ||||||||||||||||||||| Sbjct: 147197 tgccatgtttgaagtccttcc 147217
>gb|AC134553.5| Mus musculus BAC clone RP24-280H19 from chromosome 12, complete sequence Length = 168895 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 387 tgaactgccatgtttgaagtc 407 ||||||||||||||||||||| Sbjct: 73448 tgaactgccatgtttgaagtc 73428
>emb|AL354749.6| Human DNA sequence from clone RP11-156D10 on chromosome 10 Contains part of the NRG3 gene for neuregulin 3, complete sequence Length = 196000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 aaaaatattaggaaatcaaaa 220 ||||||||||||||||||||| Sbjct: 167250 aaaaatattaggaaatcaaaa 167270
>gb|AC110809.3| Homo sapiens BAC clone RP11-754E11 from 4, complete sequence Length = 98985 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 203 aatattaggaaatcaaaacta 223 ||||||||||||||||||||| Sbjct: 23947 aatattaggaaatcaaaacta 23967
>dbj|BS000016.1| Pan troglodytes chromosome 22 clone:PTB-066F21, map 22, complete sequences Length = 148564 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aactggaaactcaaagaagag 189 ||||||||||||||||||||| Sbjct: 24143 aactggaaactcaaagaagag 24123
>gb|AF222685.1|AF222685 Homo sapiens chromosome 21 PAC 103K19 map 21q11.2, complete sequence Length = 85040 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aactggaaactcaaagaagag 189 ||||||||||||||||||||| Sbjct: 74120 aactggaaactcaaagaagag 74100
>emb|AL163208.2|HS21C008 Homo sapiens chromosome 21 segment HS21C008 Length = 340000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aactggaaactcaaagaagag 189 ||||||||||||||||||||| Sbjct: 232317 aactggaaactcaaagaagag 232297
>emb|BX322595.8| Zebrafish DNA sequence from clone RP71-69P9 in linkage group 22, complete sequence Length = 147460 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 199 taaaaatattaggaaatcaaa 219 ||||||||||||||||||||| Sbjct: 123866 taaaaatattaggaaatcaaa 123886
>gb|AF130248.1|AF130248 Homo sapiens clone 10J13 chromosome 21 map 21q11.2, complete sequence Length = 137074 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 aactggaaactcaaagaagag 189 ||||||||||||||||||||| Sbjct: 18536 aactggaaactcaaagaagag 18516
>gb|AC151981.3| Mus musculus BAC clone RP24-66K3 from chromosome 12, complete sequence Length = 185710 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 387 tgaactgccatgtttgaagtc 407 ||||||||||||||||||||| Sbjct: 8526 tgaactgccatgtttgaagtc 8546
>gb|AE005674.1| Shigella flexneri 2a str. 301, complete genome Length = 4607203 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 2084355 gccagcatgaacaacaataacaca 2084378 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 315929 gccagcatgaacaacaataacaca 315906
>gb|AY330819.1| Brotia binodosa ZMB 200.202 16S ribosomal RNA gene, partial sequence; mitochondrial Length = 836 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 taaggaacaggagaagcttc 149 |||||||||||||||||||| Sbjct: 657 taaggaacaggagaagcttc 676
>gb|AY795482.1| Homo sapiens DnaJ (Hsp40) homolog, subfamily C, member 3 (DNAJC3) gene, complete cds Length = 117695 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 accagtgttactcattattc 251 |||||||||||||||||||| Sbjct: 473 accagtgttactcattattc 454
>gb|AC102354.14| Mus musculus chromosome 17, clone RP23-80J17, complete sequence Length = 117703 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 agagggacagggataaaaatatta 209 |||| ||||||||||||||||||| Sbjct: 104579 agagagacagggataaaaatatta 104602
>gb|AY430810.1| Neodiprion sertifer nucleopolyhdrovirus, complete genome Length = 86462 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gataaaaatattaggaaatc 216 |||||||||||||||||||| Sbjct: 51354 gataaaaatattaggaaatc 51373
>gb|AC117656.13| Mus musculus chromosome 14, clone RP23-298L3, complete sequence Length = 228361 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 631 tcttcaagctttgcttccag 650 |||||||||||||||||||| Sbjct: 173000 tcttcaagctttgcttccag 173019
>gb|AC117201.2| Mus musculus BAC clone RP23-216E6 from 16, complete sequence Length = 218980 Score = 40.1 bits (20), Expect = 8.9 Identities = 22/23 (95%) Strand = Plus / Plus Query: 2 tgaataaataccagggnatattt 24 |||||||||||||||| |||||| Sbjct: 97528 tgaataaataccagggaatattt 97550
>ref|XM_761404.1| Theileria parva strain Muguga chromosome 1 hypothetical protein (TP01_0976) partial mRNA Length = 1696 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 42 caaaaacacaggcatctacttggt 65 ||||||||||||||||| |||||| Sbjct: 357 caaaaacacaggcatctccttggt 334
>gb|AC090654.38| Mus musculus strain C57BL/6J clone rp23-329p1 map 14, complete sequence Length = 204267 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 322 tcagatgctctgaactgttg 341 |||||||||||||||||||| Sbjct: 153686 tcagatgctctgaactgttg 153705
>gb|DQ445443.1| Heliconius heurippa isolate Stri-b-34 invected (inv) gene, inv-1 allele, partial cds Length = 415 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 283 gataaaaatattatgaaatcaaaa 260
>gb|DQ445437.1| Heliconius heurippa isolate M145 invected (inv) gene, inv-1 allele, partial cds Length = 415 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 283 gataaaaatattatgaaatcaaaa 260
>gb|DQ445431.1| Heliconius heurippa isolate Stri-b-40 invected (inv) gene, inv-2 allele, partial cds Length = 415 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 283 gataaaaatattatgaaatcaaaa 260
>gb|DQ445429.1| Heliconius cydno cordula isolate M199 invected (inv) gene, inv-2 allele, partial cds Length = 423 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 291 gataaaaatattatgaaatcaaaa 268
>gb|DQ445428.1| Heliconius cydno cordula isolate M199 invected (inv) gene, inv-1 allele, partial cds Length = 424 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 292 gataaaaatattatgaaatcaaaa 269
>gb|DQ445427.1| Heliconius cydno cordula isolate M189 invected (inv) gene, inv-2 allele, partial cds Length = 423 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 291 gataaaaatattatgaaatcaaaa 268
>gb|DQ445425.1| Heliconius cydno cordula isolate M111 invected (inv) gene, inv-2 allele, partial cds Length = 415 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 283 gataaaaatattatgaaatcaaaa 260
>gb|DQ445424.1| Heliconius cydno cordula isolate M111 invected (inv) gene, inv-1 allele, partial cds Length = 415 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 283 gataaaaatattatgaaatcaaaa 260
>gb|DQ445423.1| Heliconius cydno cordula isolate M110 invected (inv) gene, inv-2 allele, partial cds Length = 424 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 292 gataaaaatattatgaaatcaaaa 269
>gb|DQ445422.1| Heliconius cydno cordula isolate M110 invected (inv) gene, inv-1 allele, partial cds Length = 423 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 291 gataaaaatattatgaaatcaaaa 268
>gb|DQ445421.1| Heliconius cydno cordula isolate M101 invected (inv) gene, inv-2 allele, partial cds Length = 424 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 292 gataaaaatattatgaaatcaaaa 269
>gb|DQ445420.1| Heliconius cydno cordula isolate M101 invected (inv) gene, inv-1 allele, partial cds Length = 424 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 292 gataaaaatattatgaaatcaaaa 269
>gb|DQ445417.1| Heliconius cydno cordula isolate M187 invected (inv) gene, inv-2 allele, partial cds Length = 424 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 292 gataaaaatattatgaaatcaaaa 269
>gb|DQ445416.1| Heliconius cydno cordula isolate M187 invected (inv) gene, inv-1 allele, partial cds Length = 424 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 292 gataaaaatattatgaaatcaaaa 269
>emb|AL445433.14| Human DNA sequence from clone RP11-234N17 on chromosome 1 Contains the 5' end of the gene for a novel protein, part of a novel gene (FLJ38225) and a ribosomal protein L5 (RPL5) pseudogene, complete sequence Length = 138918 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 166 aacaactggaaactcaaaga 185 |||||||||||||||||||| Sbjct: 5289 aacaactggaaactcaaaga 5270
>emb|AL138955.14| Human DNA sequence from clone RP11-10E18 on chromosome 13 Contains the 5' UTR of the gene for novel zinc-finger protein (DZIP1, KIAA0996), the 3' end of the DNAJC3 gene for DnaJ (Hsp40) homolog, subfamily C, member 3, a pseudogene similar to part of NADH dehydrogenase 5 (MTND5) , a novel cytochrome B pseudogene, a NADH dehydrogenase 6 (MTND6) pseudogene and 4 CpG islands, complete sequence Length = 149704 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 232 accagtgttactcattattc 251 |||||||||||||||||||| Sbjct: 32227 accagtgttactcattattc 32208
>emb|AL137803.15| Human DNA sequence from clone RP5-819F18 on chromosome 1, complete sequence Length = 59723 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 tcaacagtagtttaatagaa 167 |||||||||||||||||||| Sbjct: 19960 tcaacagtagtttaatagaa 19979
>gb|AC144764.4| Homo sapiens 3 BAC RP11-557B13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 202771 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Minus Query: 147 ttcaacagtagtttaatagaacaactggaaac 178 ||||||| | |||| ||||||||||||||||| Sbjct: 10853 ttcaacatttgtttgatagaacaactggaaac 10822
>emb|BX323068.15| Zebrafish DNA sequence from clone DKEYP-25A6 in linkage group 24, complete sequence Length = 156749 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 632 cttcaagctttgcttccagt 651 |||||||||||||||||||| Sbjct: 89331 cttcaagctttgcttccagt 89312
>emb|BX647858.1|HSM808004 Homo sapiens genomic DNA; cDNA DKFZp313K1416 (from clone DKFZp313K1416) Length = 2410 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gataaaaatattaggaaatc 216 |||||||||||||||||||| Sbjct: 713 gataaaaatattaggaaatc 732
>dbj|AK125269.1| Homo sapiens cDNA FLJ43279 fis, clone KIDNE2018217 Length = 2409 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 accagtgttactcattattc 251 |||||||||||||||||||| Sbjct: 1041 accagtgttactcattattc 1060
>gb|AC135316.15| Medicago truncatula clone mth2-20l8, complete sequence Length = 127653 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aaaaatattaggaaatcaaa 219 |||||||||||||||||||| Sbjct: 61245 aaaaatattaggaaatcaaa 61264
>gb|AC093827.3| Homo sapiens BAC clone RP11-397E7 from 4, complete sequence Length = 192263 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 192 acagggataaaaatattaggaaat 215 |||||||||||||| ||||||||| Sbjct: 171488 acagggataaaaatgttaggaaat 171511
>gb|AC009126.2| Homo sapiens chromosome 5 clone RP11-496M2, complete sequence Length = 177978 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gataaaaatattaggaaatc 216 |||||||||||||||||||| Sbjct: 16168 gataaaaatattaggaaatc 16187
>ref|XM_943048.1| PREDICTED: Homo sapiens hypothetical protein LOC647834 (LOC647834), mRNA Length = 2831 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 accagtgttactcattattc 251 |||||||||||||||||||| Sbjct: 1178 accagtgttactcattattc 1197
>ref|XM_931238.1| PREDICTED: Homo sapiens hypothetical protein LOC643011 (LOC643011), mRNA Length = 2829 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 232 accagtgttactcattattc 251 |||||||||||||||||||| Sbjct: 1178 accagtgttactcattattc 1197
>gb|AC021020.3|AC021020 Homo sapiens BAC clone RP11-557B13 from 3, complete sequence Length = 202771 Score = 40.1 bits (20), Expect = 8.9 Identities = 29/32 (90%) Strand = Plus / Plus Query: 147 ttcaacagtagtttaatagaacaactggaaac 178 ||||||| | |||| ||||||||||||||||| Sbjct: 191919 ttcaacatttgtttgatagaacaactggaaac 191950
>gb|AF015720.2|AF015720 Homo sapiens chromosome 21 clone PAC clone P169K17 map 21q22.2, complete sequence Length = 179544 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ttaggaaatcaaaactacag 226 |||||||||||||||||||| Sbjct: 96513 ttaggaaatcaaaactacag 96532
>gb|AC023892.35|AC023892 Homo sapiens 12 BAC RP11-937H2 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 186000 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 aaaaatattaggaaatcaaa 219 |||||||||||||||||||| Sbjct: 42501 aaaaatattaggaaatcaaa 42482
>gb|AC023160.31|AC023160 Homo sapiens 12 BAC RP11-1035D8 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 101027 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 200 aaaaatattaggaaatcaaa 219 |||||||||||||||||||| Sbjct: 47955 aaaaatattaggaaatcaaa 47974
>gb|AC008906.5|AC008906 Homo sapiens chromosome 5 clone CTD-2260A17, complete sequence Length = 151801 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gataaaaatattaggaaatc 216 |||||||||||||||||||| Sbjct: 89025 gataaaaatattaggaaatc 89044
>gb|AE014073.1| Shigella flexneri 2a str. 2457T, complete genome Length = 4599354 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 2059692 gccagcatgaacaacaataacaca 2059715
>gb|AC009073.8|AC009073 Homo sapiens chromosome 16 clone RP11-31O11, complete sequence Length = 177978 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 197 gataaaaatattaggaaatc 216 |||||||||||||||||||| Sbjct: 16168 gataaaaatattaggaaatc 16187
>dbj|BA000002.2| Aeropyrum pernix K1 DNA, complete genome Length = 1669695 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 27 cgccagcatgaacaacaaaaacac 50 |||||||| ||||||||||||||| Sbjct: 753425 cgccagcaagaacaacaaaaacac 753402
>dbj|BS000198.1| Pan troglodytes chromosome 22 clone:RP43-091A22, map 22, complete sequences Length = 181880 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ttaggaaatcaaaactacag 226 |||||||||||||||||||| Sbjct: 72116 ttaggaaatcaaaactacag 72135
>dbj|AB013389.1| Arabidopsis thaliana genomic DNA, chromosome 5, TAC clone:K1F13 Length = 83511 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 282 acatacattgccatcgaata 301 |||||||||||||||||||| Sbjct: 69655 acatacattgccatcgaata 69636
>emb|AJ229041.1|HS229041 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22; segment 1/3 Length = 323000 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 207 ttaggaaatcaaaactacag 226 |||||||||||||||||||| Sbjct: 212728 ttaggaaatcaaaactacag 212709
>emb|AL163268.2|HS21C068 Homo sapiens chromosome 21 segment HS21C068 Length = 340000 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 207 ttaggaaatcaaaactacag 226 |||||||||||||||||||| Sbjct: 309299 ttaggaaatcaaaactacag 309318
>gb|AY745340.1| Heliconius cydno galanthus clone 5 invected (INV) gene, partial cds Length = 423 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 291 gataaaaatattatgaaatcaaaa 268
>gb|AY745336.1| Heliconius cydno galanthus clone 1 invected (INV) gene, partial cds Length = 423 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 197 gataaaaatattaggaaatcaaaa 220 ||||||||||||| |||||||||| Sbjct: 291 gataaaaatattatgaaatcaaaa 268
>emb|CR847509.9| Zebrafish DNA sequence from clone DKEY-29B22 in linkage group 3, complete sequence Length = 157983 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 36 gaacaacaaaaacacaggca 55 |||||||||||||||||||| Sbjct: 148232 gaacaacaaaaacacaggca 148213
>emb|CT573017.5| Mouse DNA sequence from clone RP24-309J23 on chromosome 17, complete sequence Length = 157643 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 171 ctggaaactcaaagaagagggaca 194 ||||||||| |||||||||||||| Sbjct: 37455 ctggaaacttaaagaagagggaca 37478
>emb|CT010501.6| Mouse DNA sequence from clone RP23-333D13 on chromosome 17, complete sequence Length = 207346 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 186 agagggacagggataaaaatatta 209 |||| ||||||||||||||||||| Sbjct: 53207 agagagacagggataaaaatatta 53230
>gb|M22993.1|RATA1INH3Z Rattus norvegicus alpha-1 inhibitor III (alpha-1-I3) gene, exons 1-3 Length = 5184 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 tgaacaacaaaaacacaggcatct 58 |||||||||||||||||| ||||| Sbjct: 4273 tgaacaacaaaaacacagtcatct 4250
>gb|CP000037.1| Shigella boydii Sb227 plasmid pSB4_227, complete sequence Length = 126697 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 80881 gccagcatgaacaacaataacaca 80858 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 38046 gccagcatgaacaacaataacaca 38023
>gb|CP000036.1| Shigella boydii Sb227, complete genome Length = 4519823 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 4121691 gccagcatgaacaacaataacaca 4121714 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 3026142 gccagcatgaacaacaataacaca 3026119 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 2470648 gccagcatgaacaacaataacaca 2470625 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 1224352 gccagcatgaacaacaataacaca 1224329
>gb|M22994.1|RATA1IIV Rat alpha-1-inhibitor IV (alpha-1I4) gene, exons 1, 2 and 3 Length = 4092 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 35 tgaacaacaaaaacacaggcatct 58 |||||||||||||||||| ||||| Sbjct: 3038 tgaacaacaaaaacacagtcatct 3015
>gb|CP000039.1| Shigella sonnei Ss046 plasmid pSS_046, complete sequence Length = 214396 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 38505 gccagcatgaacaacaataacaca 38528 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 24491 gccagcatgaacaacaataacaca 24514
>gb|CP000038.1| Shigella sonnei Ss046, complete genome Length = 4825265 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 4476391 gccagcatgaacaacaataacaca 4476368 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 4133065 gccagcatgaacaacaataacaca 4133042 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 3764760 gccagcatgaacaacaataacaca 3764737 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 3407724 gccagcatgaacaacaataacaca 3407701 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 2830912 gccagcatgaacaacaataacaca 2830889 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 2812754 gccagcatgaacaacaataacaca 2812731 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 2281029 gccagcatgaacaacaataacaca 2281006 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 28 gccagcatgaacaacaaaaacaca 51 ||||||||||||||||| |||||| Sbjct: 20295 gccagcatgaacaacaataacaca 20272 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,516,720 Number of Sequences: 3902068 Number of extensions: 6516720 Number of successful extensions: 136100 Number of sequences better than 10.0: 73 Number of HSP's better than 10.0 without gapping: 73 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 135801 Number of HSP's gapped (non-prelim): 294 length of query: 651 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 628 effective length of database: 17,143,297,704 effective search space: 10765990958112 effective search space used: 10765990958112 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
