ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5c03 |
|---|---|
| Clone Library Name | barley_pub |
>PROA_SHIFL (Q83SH9) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.8 bits (68), Expect = 1.6 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +3 Query: 60 SIKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRXG 239 ++K V + + + C T +N N DS P +S + + S +TL + A L Q + G Sbjct: 238 ALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALTQLQAG 297
>PROA_SHISS (Q3Z594) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +3 Query: 60 SIKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRXG 239 ++K V + + + C T +N N DS P +S + + S +TL + A L Q + G Sbjct: 238 ALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAG 297
>PROA_SHIDS (Q32J27) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +3 Query: 60 SIKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRXG 239 ++K V + + + C T +N N DS P +S + + S +TL + A L Q + G Sbjct: 238 ALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQTG 297
>PROA_SHIBS (Q325P3) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +3 Query: 60 SIKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRXG 239 ++K V + + + C T +N N DS P +S + + S +TL + A L Q + G Sbjct: 238 ALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAG 297
>PROA_ECOLI (P07004) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 30.0 bits (66), Expect = 2.7 Identities = 17/60 (28%), Positives = 29/60 (48%) Frame = +3 Query: 60 SIKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRXG 239 ++K V + + + C T +N N DS P +S + + S +TL + A L Q + G Sbjct: 238 ALKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQAG 297
>GEA2_YEAST (P39993) ARF guanine-nucleotide exchange factor 2| Length = 1459 Score = 29.6 bits (65), Expect = 3.5 Identities = 15/42 (35%), Positives = 23/42 (54%) Frame = +3 Query: 48 GNGTSIKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSD 173 GNG+S G+ +Q +S + I+ NT D KP++SD Sbjct: 1414 GNGSSSHGSAHEQTPESNDVEIEATAPIDDNTDDDNKPKLSD 1455
>PROA_ECOL6 (Q8FKM3) Gamma-glutamyl phosphate reductase (GPR) (EC 1.2.1.41)| (Glutamate-5-semialdehyde dehydrogenase) (Glutamyl-gamma-semialdehyde dehydrogenase) (GSA dehydrogenase) Length = 417 Score = 29.6 bits (65), Expect = 3.5 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 63 IKGTVQDQNDKSTECTTT*QFYINLNTKDSVKPRVSDK*SSSKITLLSQAPWLNQSRXG 239 +K V + + + C T +N N DS P +S + + S +TL + A L Q + G Sbjct: 239 LKVIVNAKTQRPSTCNTVETLLVNKNIADSFLPALSKQMAESGVTLHADAAALAQLQTG 297
>AMT2_ARATH (Q9M6N7) Ammonium transporter 2 (AtAMT2)| Length = 475 Score = 29.3 bits (64), Expect = 4.6 Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 4/47 (8%) Frame = +1 Query: 223 INQGXALIDKNFWAGPRPTADEVA----NITLEFLVLGLHLWRRWKG 351 ++ G A +W GPRP AD N+ L GL LW W G Sbjct: 189 LSSGVAGFVAAYWVGPRPKADRERFPPNNVLLMLAGAGL-LWMGWSG 234
>DPOL_ADEG1 (Q64751) DNA polymerase (EC 2.7.7.7)| Length = 1121 Score = 28.5 bits (62), Expect = 7.9 Identities = 22/56 (39%), Positives = 26/56 (46%), Gaps = 4/56 (7%) Frame = -3 Query: 369 SIADVEALPPPPEMKTQNQKFKGDVSYFICSRPGA----GPKVLVDESXSLIDSAT 214 SI +EA PPPPEM D ICSR G + L DE ++ID T Sbjct: 560 SILKIEAYPPPPEML--------DPLPPICSRRGGRLVWTNEALYDEVVTVIDILT 607
>CHST1_MOUSE (Q9EQC0) Carbohydrate sulfotransferase 1 (EC 2.8.2.21) (Keratan| sulfate Gal-6 sulfotransferase) (KSST) (KSGal6ST) (KS6ST) (Galactose/N-acetylglucosamine/N-acetylglucosamine 6-O-sulfotransferase 1) (GST-1) Length = 411 Score = 28.5 bits (62), Expect = 7.9 Identities = 12/30 (40%), Positives = 16/30 (53%) Frame = -3 Query: 348 LPPPPEMKTQNQKFKGDVSYFICSRPGAGP 259 + PPP T N+ F+ S +CSRP P Sbjct: 139 IKPPPVNHTTNRVFRRGASRVLCSRPVCDP 168 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,375,772 Number of Sequences: 219361 Number of extensions: 1015461 Number of successful extensions: 2175 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 2146 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2175 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2677159704 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
