ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1KR122_HUMAN (P59991) Keratin-associated protein 12-2 (Keratin-as... 30 3.7
2SERC_METMA (Q8PT12) Phosphoserine aminotransferase (EC 2.6.1.52)... 28 8.2
3SERC_METBF (P52878) Phosphoserine aminotransferase (EC 2.6.1.52)... 28 8.2
4SERC_METAC (Q8TNI1) Phosphoserine aminotransferase (EC 2.6.1.52)... 28 8.2

>KR122_HUMAN (P59991) Keratin-associated protein 12-2 (Keratin-associated|
           protein 12.2) (High sulfur keratin-associated protein
           12.2)
          Length = 146

 Score = 29.6 bits (65), Expect = 3.7
 Identities = 22/56 (39%), Positives = 24/56 (42%), Gaps = 1/56 (1%)
 Frame = -1

Query: 169 TSCQISCPANRACNSSVI*SNHFFPAVE*SVFWLTCLS*YVCVSIC-PSEIKQAVC 5
           +SCQ SC     C SSV     F PAV        CL      S+C P   K AVC
Sbjct: 28  SSCQASCCVPVGCQSSVCVPVSFKPAV--------CLPVSCQSSVCVPMSFKSAVC 75



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>SERC_METMA (Q8PT12) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)|
          Length = 370

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 262 CSRSLLGLRXXGVVAWESVSLNWSSSL 182
           C  S+LG R   V+ WES S  W++ +
Sbjct: 79  CLWSMLGCRGVDVLVWESFSKEWATDI 105



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>SERC_METBF (P52878) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)|
          Length = 370

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 262 CSRSLLGLRXXGVVAWESVSLNWSSSL 182
           C  S+LG R   V+ WES S  W++ +
Sbjct: 79  CLWSMLGCRGVDVLVWESFSKGWATDI 105



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>SERC_METAC (Q8TNI1) Phosphoserine aminotransferase (EC 2.6.1.52) (PSAT)|
          Length = 370

 Score = 28.5 bits (62), Expect = 8.2
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 262 CSRSLLGLRXXGVVAWESVSLNWSSSL 182
           C  S+LG R   V+ WES S  W++ +
Sbjct: 79  CLWSMLGCRGVDVLVWESFSKGWATDI 105


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 60,810,796
Number of Sequences: 219361
Number of extensions: 1125224
Number of successful extensions: 2409
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2409
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2793557952
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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