ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4n01
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1TBX8_CAEEL (Q22292) T-box transcription factor tbx-8 32 0.47
2CYB_PSEAU (Q9MLK4) Cytochrome b 28 5.2

>TBX8_CAEEL (Q22292) T-box transcription factor tbx-8|
          Length = 315

 Score = 32.0 bits (71), Expect = 0.47
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = +2

Query: 38  WMKHGTSLHSRDARLLTYRDGILSSQMIKQNPCCYTNIXALYCKE 172
           W+K G +   R+ + L + DG+ S +    NP C+  +    C E
Sbjct: 74  WVKSGKAEKHREPKKLWHADGVRSGKEWMTNPVCFDRVKITNCAE 118



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>CYB_PSEAU (Q9MLK4) Cytochrome b|
          Length = 372

 Score = 28.5 bits (62), Expect = 5.2
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = -2

Query: 130 VLLYHLAGKNAIPVSEKPSVSTV*GCSMFHPYHSY*CLFSCT 5
           ++L H  G N  P+   P +  +     FHPYHSY  +F  T
Sbjct: 189 IMLLHNEGSNN-PLGTNPDIDKI----PFHPYHSYKDMFIIT 225


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,223,295
Number of Sequences: 219361
Number of extensions: 336179
Number of successful extensions: 883
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 883
length of database: 80,573,946
effective HSP length: 34
effective length of database: 73,115,672
effective search space used: 1754776128
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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