ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5b19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_468860.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.004
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 50 0.004
3gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genom... 50 0.004
4gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 gen... 50 0.004
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
6dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.004
7dbj|AK119216.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
8dbj|AK104779.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
9dbj|AK067647.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
10dbj|AK067507.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
11dbj|AK060946.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.004
12gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 50 0.004
13ref|NM_197730.1| Oryza sativa (japonica cultivar-group) putative... 48 0.015
14dbj|AK108419.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
15dbj|AK072706.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.015
16ref|NM_190055.1| Oryza sativa (japonica cultivar-group), predic... 42 0.91
17ref|XM_425382.1| PREDICTED: Gallus gallus similar to 6330406P08R... 42 0.91
18gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, comple... 42 0.91
19gb|AC093885.3| Homo sapiens BAC clone RP11-660P22 from 4, comple... 42 0.91
20dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
21gb|AC106888.2| Homo sapiens BAC clone CTD-2006P5 from 4, complet... 42 0.91
22dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
23dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic D... 42 0.91
24gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 42 0.91
25gb|AY804252.1| Musa acuminata ACC oxidase (MAO3) gene, complete cds 40 3.6
26gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, com... 40 3.6
27gb|AC175380.2| Mus musculus BAC clone RP24-333L5 from chromosome... 40 3.6
28ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8... 40 3.6
29gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome... 40 3.6
30emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete ch... 40 3.6
31gb|AC100383.12| Mus musculus chromosome 6, clone RP23-132E3, com... 40 3.6
32gb|U86045.1|MSU86045 Musa sp. 1-aminocyclopropane-1-carboxylate ... 40 3.6
33gb|AC154864.2| Mus musculus BAC clone RP23-7A5 from chromosome 1... 40 3.6
34emb|BX546442.2| Human DNA sequence from clone WI2-8829E4 on chro... 40 3.6
35emb|AJ223232.1|MAAJ3232 Musa acuminata ACO1 gene 40 3.6
36gb|AC151907.5| Mus musculus BAC clone RP23-163E23 from chromosom... 40 3.6
37gb|AC159907.3| Pan troglodytes BAC clone CH251-286G18 from chrom... 40 3.6
38gb|AC106747.2| Homo sapiens chromosome 5 clone RP11-152C23, comp... 40 3.6
39gb|AC093801.3| Homo sapiens BAC clone RP11-313E19 from 4, comple... 40 3.6
40gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chrom... 40 3.6
41gb|AC159233.2| Mus musculus BAC clone RP24-428L6 from chromosome... 40 3.6
42dbj|AK034271.1| Mus musculus adult male diencephalon cDNA, RIKEN... 40 3.6
43emb|AJ505611.2|MAC505611 Musa acuminata mRNA for putative aminoc... 40 3.6
44gb|AC007024.4|AC007024 Homo sapiens PAC clone RP4-664A21 from 7p... 40 3.6
45emb|AJ604546.1| Musa acuminata mRNA for 1-aminocyclopropane-1-ca... 40 3.6
46emb|AJ505610.1|MIN505610 Mangifera indica partial mRNA for putat... 40 3.6
47gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete... 40 3.6
48gb|AF081917.1|AF081917 Musa acuminata 1-aminocyclopropane-1-carb... 40 3.6
49gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome ... 40 3.6
50emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on ch... 40 3.6
51gb|U80233.1|MSU80233 Musa acuminata 1-aminocyclopropane-1-carbox... 40 3.6
52gb|U55770.1|MAU55770 Musa acuminata 1-aminocyclopropane-1-carbox... 40 3.6
53emb|X91076.1|MIDNAACCO M.acuminata acco1 gene 40 3.6 
>ref|XM_468860.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1650

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 229  ctgtgctcggcgctcttgtacgtgccattggtgagga 265
            ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 1442 ctgtgctcgacgctcttgtacgcgccattggtaagga 1406
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 229      ctgtgctcggcgctcttgtacgtgccattggtgagga 265
                ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 18383972 ctgtgctcgacgctcttgtacgcgccattggtaagga 18383936
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>gb|AC106887.3| Oryza sativa chromosome 3 BAC OSJNBa0054H04 genomic sequence, complete
              sequence
          Length = 159579

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                   
Query: 229    ctgtgctcggcgctcttgtacgtgccattggtgagga 265
              ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 150403 ctgtgctcgacgctcttgtacgcgccattggtaagga 150367
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>gb|AC079874.21| Oryza sativa chromosome 10 BAC OSJNBa0042H09 genomic sequence, complete
              sequence
          Length = 144191

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                           
Query: 241    ctcttgtacgtgccattggtgaggatctg 269
              ||||||||| |||||||||||||||||||
Sbjct: 108303 ctcttgtacttgccattggtgaggatctg 108275



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 241    ctcttgtacgtgccattggtgaggatctg 269
              ||||||||| ||||||| |||||||||||
Sbjct: 114198 ctcttgtacttgccatttgtgaggatctg 114170
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 241      ctcttgtacgtgccattggtgaggatctg 269
                ||||||||| |||||||||||||||||||
Sbjct: 21501754 ctcttgtacttgccattggtgaggatctg 21501782



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 241      ctcttgtacgtgccattggtgaggatctg 269
                ||||||||| ||||||| |||||||||||
Sbjct: 21495859 ctcttgtacttgccatttgtgaggatctg 21495887
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                     
Query: 229      ctgtgctcggcgctcttgtacgtgccattggtgagga 265
                ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 18378013 ctgtgctcgacgctcttgtacgcgccattggtaagga 18377977
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>dbj|AK119216.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-043-E12, full
           insert sequence
          Length = 1478

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 229 ctgtgctcggcgctcttgtacgtgccattggtgagga 265
           ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 956 ctgtgctcgacgctcttgtacgcgccattggtaagga 920
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>dbj|AK104779.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-039-C04, full
           insert sequence
          Length = 1085

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 229 ctgtgctcggcgctcttgtacgtgccattggtgagga 265
           ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 537 ctgtgctcgacgctcttgtacgcgccattggtaagga 501
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>dbj|AK067647.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013111O20, full
           insert sequence
          Length = 1505

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 229 ctgtgctcggcgctcttgtacgtgccattggtgagga 265
           ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 980 ctgtgctcgacgctcttgtacgcgccattggtaagga 944
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>dbj|AK067507.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109I01, full
            insert sequence
          Length = 2436

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                 
Query: 229  ctgtgctcggcgctcttgtacgtgccattggtgagga 265
            ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 1914 ctgtgctcgacgctcttgtacgcgccattggtaagga 1878
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>dbj|AK060946.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-F02, full
           insert sequence
          Length = 1085

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 34/37 (91%)
 Strand = Plus / Minus

                                                
Query: 229 ctgtgctcggcgctcttgtacgtgccattggtgagga 265
           ||||||||| |||||||||||| ||||||||| ||||
Sbjct: 537 ctgtgctcgacgctcttgtacgcgccattggtaagga 501
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                             
Query: 241      ctcttgtacgtgccattggtgaggatctg 269
                ||||||||| |||||||||||||||||||
Sbjct: 21513417 ctcttgtacttgccattggtgaggatctg 21513445



 Score = 42.1 bits (21), Expect = 0.91
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 241      ctcttgtacgtgccattggtgaggatctg 269
                ||||||||| ||||||| |||||||||||
Sbjct: 21507522 ctcttgtacttgccatttgtgaggatctg 21507550
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>ref|NM_197730.1| Oryza sativa (japonica cultivar-group) putative ethylene-forming
           enzyme (OSJNBa0042H09.19), mRNA
          Length = 1083

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 241 ctcttgtacgtgccattggtgaggatct 268
           ||||||||| ||||||||||||||||||
Sbjct: 863 ctcttgtacttgccattggtgaggatct 836
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>dbj|AK108419.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-142-H11, full
           insert sequence
          Length = 1216

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 241 ctcttgtacgtgccattggtgaggatct 268
           ||||||||| ||||||||||||||||||
Sbjct: 694 ctcttgtacttgccattggtgaggatct 667
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>dbj|AK072706.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023138C05, full
           insert sequence
          Length = 2491

 Score = 48.1 bits (24), Expect = 0.015
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 241 ctcttgtacgtgccattggtgaggatct 268
           ||||||||| ||||||||||||||||||
Sbjct: 874 ctcttgtacttgccattggtgaggatct 847
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>ref|NM_190055.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1101

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 239 cgctcttgtacgtgccattggtgag 263
           ||||||||||| |||||||||||||
Sbjct: 886 cgctcttgtacctgccattggtgag 862
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>ref|XM_425382.1| PREDICTED: Gallus gallus similar to 6330406P08Rik protein
           (LOC427811), mRNA
          Length = 1152

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 51  atccacgaaccttgtcccttc 71
           |||||||||||||||||||||
Sbjct: 204 atccacgaaccttgtcccttc 184
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>gb|AC108050.5| Homo sapiens BAC clone RP11-331M18 from 4, complete sequence
          Length = 214250

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 254   cattggtgaggatctggagaa 274
             |||||||||||||||||||||
Sbjct: 55988 cattggtgaggatctggagaa 56008
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>gb|AC093885.3| Homo sapiens BAC clone RP11-660P22 from 4, complete sequence
          Length = 173960

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 255    attggtgaggatctggagaaa 275
              |||||||||||||||||||||
Sbjct: 158790 attggtgaggatctggagaaa 158770
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 239      cgctcttgtacgtgccattggtgag 263
                ||||||||||| |||||||||||||
Sbjct: 41049859 cgctcttgtacctgccattggtgag 41049883
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>gb|AC106888.2| Homo sapiens BAC clone CTD-2006P5 from 4, complete sequence
          Length = 90527

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   attggtgaggatctggagaaa 275
             |||||||||||||||||||||
Sbjct: 64756 attggtgaggatctggagaaa 64776
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>dbj|AP003266.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0492G09
          Length = 142239

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 239   cgctcttgtacgtgccattggtgag 263
             ||||||||||| |||||||||||||
Sbjct: 86789 cgctcttgtacctgccattggtgag 86813
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>dbj|AP003246.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0423A12
          Length = 178649

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 239    cgctcttgtacgtgccattggtgag 263
              ||||||||||| |||||||||||||
Sbjct: 178284 cgctcttgtacctgccattggtgag 178308
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 42.1 bits (21), Expect = 0.91
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 140    gctccgggagcggcttcacca 160
              |||||||||||||||||||||
Sbjct: 806886 gctccgggagcggcttcacca 806866
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>gb|AY804252.1| Musa acuminata ACC oxidase (MAO3) gene, complete cds
          Length = 3718

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  cgctcttgtacgtgccattggtga 262
            ||||||||||| ||||||||||||
Sbjct: 2746 cgctcttgtacttgccattggtga 2723
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>gb|AC115049.6| Mus musculus chromosome 3, clone RP24-332L11, complete sequence
          Length = 165247

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 57965 ttggtgaggatctggagaaa 57946
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>gb|AC175380.2| Mus musculus BAC clone RP24-333L5 from chromosome 13, complete sequence
          Length = 164055

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttggtgaggatctggagaaa 275
              ||||||||||||||||||||
Sbjct: 105080 ttggtgaggatctggagaaa 105099
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>ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8@) on chromosome X
          Length = 652898

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttggtgaggatctggagaaa 275
              ||||||||||||||||||||
Sbjct: 577422 ttggtgaggatctggagaaa 577441
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>gb|AC112150.4| Mus musculus BAC clone RP24-84I17 from chromosome 16, complete sequence
          Length = 211640

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 168   aacacaagcattctgaaacatcac 191
             |||||||||||||||| |||||||
Sbjct: 25333 aacacaagcattctgacacatcac 25310
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>emb|AL591786.1|SME591786 Sinorhizobium meliloti 1021 complete chromosome; segment 5/12
          Length = 299350

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 209    tctcgacgtccggcagcacc 228
              ||||||||||||||||||||
Sbjct: 111423 tctcgacgtccggcagcacc 111442
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>gb|AC100383.12| Mus musculus chromosome 6, clone RP23-132E3, complete sequence
          Length = 241050

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttggtgaggatctggagaaa 275
              ||||||||||||||||||||
Sbjct: 202939 ttggtgaggatctggagaaa 202920
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>gb|U86045.1|MSU86045 Musa sp. 1-aminocyclopropane-1-carboxylate oxidase (MAO2) gene,
            complete cds
          Length = 3718

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  cgctcttgtacgtgccattggtga 262
            ||||||||||| ||||||||||||
Sbjct: 2746 cgctcttgtacttgccattggtga 2723
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>gb|AC154864.2| Mus musculus BAC clone RP23-7A5 from chromosome 12, complete sequence
          Length = 208597

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 79896 ttggtgaggatctggagaaa 79877
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>emb|BX546442.2| Human DNA sequence from clone WI2-8829E4 on chromosome X, complete
             sequence
          Length = 43157

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 25516 ttggtgaggatctggagaaa 25535
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>emb|AJ223232.1|MAAJ3232 Musa acuminata ACO1 gene
          Length = 1593

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  cgctcttgtacgtgccattggtga 262
            ||||||||||| ||||||||||||
Sbjct: 1203 cgctcttgtacttgccattggtga 1180
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>gb|AC151907.5| Mus musculus BAC clone RP23-163E23 from chromosome 15, complete sequence
          Length = 197165

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 256    ttggtgaggatctggagaaa 275
              ||||||||||||||||||||
Sbjct: 159332 ttggtgaggatctggagaaa 159313
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>gb|AC159907.3| Pan troglodytes BAC clone CH251-286G18 from chromosome unknown,
             complete sequence
          Length = 156488

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 91190 ttggtgaggatctggagaaa 91209
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>gb|AC106747.2| Homo sapiens chromosome 5 clone RP11-152C23, complete sequence
          Length = 106038

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     tatttagattcccttctaga 21
             ||||||||||||||||||||
Sbjct: 75662 tatttagattcccttctaga 75643
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>gb|AC093801.3| Homo sapiens BAC clone RP11-313E19 from 4, complete sequence
          Length = 126929

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 59438 ttggtgaggatctggagaaa 59457
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>gb|AC160022.2| Pan troglodytes BAC clone CH251-424F19 from chromosome unknown, complete
              sequence
          Length = 197895

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 256    ttggtgaggatctggagaaa 275
              ||||||||||||||||||||
Sbjct: 140837 ttggtgaggatctggagaaa 140856
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>gb|AC159233.2| Mus musculus BAC clone RP24-428L6 from chromosome 12, complete sequence
          Length = 142100

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 79240 ttggtgaggatctggagaaa 79221
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>dbj|AK034271.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330171B01 product:similar to ORF4 PROTEIN
            [Rattus norvegicus], full insert sequence
          Length = 3592

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 256  ttggtgaggatctggagaaa 275
            ||||||||||||||||||||
Sbjct: 1621 ttggtgaggatctggagaaa 1640
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>emb|AJ505611.2|MAC505611 Musa acuminata mRNA for putative aminocyclopropane carboxylate
           oxidase (aco gene), cultivar Ney Poovan
          Length = 1181

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 239 cgctcttgtacgtgccattggtga 262
           ||||||||||| ||||||||||||
Sbjct: 768 cgctcttgtacttgccattggtga 745
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>gb|AC007024.4|AC007024 Homo sapiens PAC clone RP4-664A21 from 7p15, complete sequence
          Length = 83848

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     tatttagattcccttctaga 21
             ||||||||||||||||||||
Sbjct: 63012 tatttagattcccttctaga 63031
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>emb|AJ604546.1| Musa acuminata mRNA for 1-aminocyclopropane-1-carboxylate oxidase
           (aco gene), cultivar Robusta
          Length = 1171

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 239 cgctcttgtacgtgccattggtga 262
           ||||||||||| ||||||||||||
Sbjct: 744 cgctcttgtacttgccattggtga 721
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>emb|AJ505610.1|MIN505610 Mangifera indica partial mRNA for putative aminocyclopropane
           carboxylate oxidase (aco gene), cultivar Alphonso
          Length = 806

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 239 cgctcttgtacgtgccattggtga 262
           ||||||||||| ||||||||||||
Sbjct: 583 cgctcttgtacttgccattggtga 560
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>gb|AC134622.3| Mus musculus BAC clone RP23-13I7 from 6, complete sequence
          Length = 203072

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 20083 ttggtgaggatctggagaaa 20064
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>gb|AF081917.1|AF081917 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1209

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 239 cgctcttgtacgtgccattggtga 262
           ||||||||||| ||||||||||||
Sbjct: 740 cgctcttgtacttgccattggtga 717
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>gb|AC163671.5| Mus musculus BAC clone RP23-21K2 from chromosome 3, complete sequence
          Length = 215382

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 256   ttggtgaggatctggagaaa 275
             ||||||||||||||||||||
Sbjct: 91342 ttggtgaggatctggagaaa 91361
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>emb|CT010517.11| Mouse DNA sequence from clone RP23-357P12 on chromosome 16, complete
              sequence
          Length = 188228

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 168    aacacaagcattctgaaacatcac 191
              |||||||||||||||| |||||||
Sbjct: 132902 aacacaagcattctgacacatcac 132925
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>gb|U80233.1|MSU80233 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1171

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 239 cgctcttgtacgtgccattggtga 262
           ||||||||||| ||||||||||||
Sbjct: 728 cgctcttgtacttgccattggtga 705
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>gb|U55770.1|MAU55770 Musa acuminata 1-aminocyclopropane-1-carboxylate oxidase mRNA,
           complete cds
          Length = 1169

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 239 cgctcttgtacgtgccattggtga 262
           ||||||||||| ||||||||||||
Sbjct: 726 cgctcttgtacttgccattggtga 703
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>emb|X91076.1|MIDNAACCO M.acuminata acco1 gene
          Length = 2496

 Score = 40.1 bits (20), Expect = 3.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 239  cgctcttgtacgtgccattggtga 262
            ||||||||||| ||||||||||||
Sbjct: 1868 cgctcttgtacttgccattggtga 1845


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,741,763
Number of Sequences: 3902068
Number of extensions: 1741763
Number of successful extensions: 40118
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39924
Number of HSP's gapped (non-prelim): 194
length of query: 275
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 253
effective length of database: 17,147,199,772
effective search space: 4338241542316
effective search space used: 4338241542316
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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