ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5b16 |
|---|---|
| Clone Library Name | barley_pub |
>emb|AJ507098.1|HVU507098 Hordeum vulgare mRNA for NBS-LRR disease resistance protein homologue (rga S-L8 gene) Length = 3261 Score = 1409 bits (711), Expect = 0.0 Identities = 743/750 (99%), Gaps = 3/750 (0%) Strand = Plus / Minus Query: 1 acattgttttct-acatgttcgatacaactgtttcctgaaatn-gtattacagcatgaaa 58 |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 3239 acattgttttctcacatgttcgatacaactgtttcctgaaatcagtattacagcatgaaa 3180 Query: 59 ctgaaataacacaaaaaggtacggggcctcctgaaggcaatggacaccaatactttctgg 118 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3179 ctgaaataacacaaaaaggtacggggcctcctgaaggcaatggacaccaatactttctga 3120 Query: 119 acagaaatcgtctcacaatatggaagtacaagactcgcaaatgatggcttagtaattata 178 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct: 3119 acagaaatcgtctcacaatatggaagtacaagactcgcaaatgatggcttagtagttata 3060 Query: 179 gcataccagaatgattgaagctagaatggcgtcgatgcaccataccagaatgctacaact 238 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 3059 gcataccagaatgattgaagctagaatggcgtcgatgcaccataccagaatgctacaact 3000 Query: 239 gaaagaaccactgtgccgcattcagagtttcagacacgaacctcctgaacatgcaccatc 298 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2999 gaaagaaccactgtgctgcattcagagtttcagacacgaacctcctgaacatgcaccatc 2940 Query: 299 ttctgctgcattccgttcttgtcccactgagttttgaagcccccatgcaagcccaccaac 358 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2939 ttctgctgcattccgttcttgtcccactgagttttgaagcccccatgcaagcccaccaac 2880 Query: 359 cagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgac 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2879 cagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgac 2820 Query: 419 aacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttagctcg 478 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2819 aacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttagctcg 2760 Query: 479 ttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgcagaa 538 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2759 ttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgcagaa 2700 Query: 539 agaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcggcaag 598 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2699 agaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcggcaag 2640 Query: 599 tgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttagagct 658 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2639 tgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttagagct 2580 Query: 659 agatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttcccttggc 718 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct: 2579 agatacttgagattttctccgtggctgcgaaatatcgggcag-ttcagtgttcccttggc 2521 Query: 719 ccatttccctctgatgatcagcttgtggag 748 |||||||||||||||||||||||||||||| Sbjct: 2520 ccatttccctctgatgatcagcttgtggag 2491
>gb|BT009451.1| Triticum aestivum clone wlmk8.pk0022.c11:fis, full insert mRNA sequence Length = 1986 Score = 240 bits (121), Expect = 5e-60 Identities = 370/452 (81%), Gaps = 7/452 (1%) Strand = Plus / Minus Query: 272 acacgaacctcctgaacatgcaccatcttctgctgcattccgttcttgtcccactgagtt 331 ||||||||||| ||||||| ||||||||| | ||||| || | ||||||| |||||| Sbjct: 1642 acacgaacctctggaacatgtaccatcttcagatgcatcccttcagtgtcccattgagtt 1583 Query: 332 ttgaagcccccatgcaagcccaccaaccagagcttcttcagggagctaagggattcaatg 391 ||||| || ||||||| || || |||||||||||| ||||||| ||||||||||||| Sbjct: 1582 ctgaagtccttgtgcaagctcagcagccagagcttcttaagggagcgaagggattcaatg 1523 Query: 392 ccttgagggaccttatccagcttcgacaacgacacaacatacaaaccttcgatgcacgga 451 ||||| ||||| |||| |||||| ||| |||||||| |||||||| || ||||| ||| Sbjct: 1522 ccttgggggactttattgagcttcaacagcgacacaatgtacaaaccatcaatgcaggga 1463 Query: 452 agggcgccatcaatgatctttagctcgttgacattatgcatgtgctttagtgtaagactc 511 || |||||||||| ||| |||||||| |||||| |||||||||||||| ||| || Sbjct: 1462 agagcgccatcaacgatttttagctcactgacatcatgcatgtgctttaagacaagcatc 1403 Query: 512 ttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcactacgcatgttgttg 571 ||||||| |||||||| ||| ||| | ||||||| | |||||||| |||||||||| Sbjct: 1402 ttcaggttgggaaaggagtctttagacaaaaccaaagtttttgcactgtgcatgttgttt 1343 Query: 572 agtcgcagatacgtgaggttcggcaagtgtggtgcaagcatccctagtggatcctcgtct 631 |||| ||||| ||||||||||||| ||||||||| | |||||| |||||| ||| Sbjct: 1342 agtctaagatatgtgaggttcggcatgtgtggtgccatcatccccagtgga------tct 1289 Query: 632 tcccaaaggtgacaccagcttagagctagatacttgagattttctccgtggctgcgaaat 691 |||| ||||||||||||||||| ||||||||||||||| ||| || || || |||| Sbjct: 1288 tccccaaggtgacaccagcttatagctagatacttgaggtttatcccatgtttgagaaag 1229 Query: 692 atcgggcagtttcagtgttcccttggcccatt 723 |||||||| ||| ||||||||||||||||||| Sbjct: 1228 atcgggcaattt-agtgttcccttggcccatt 1198
>gb|AC119073.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0082N20 BAC genomic sequence, complete sequence Length = 138826 Score = 198 bits (100), Expect = 2e-47 Identities = 327/402 (81%), Gaps = 8/402 (1%) Strand = Plus / Plus Query: 272 acacgaacctcctgaacatgcaccatcttctgctgcattccgttcttgtcccactgagtt 331 ||||||| ||| |||||||| ||||||||| ||||||| ||| |||| ||| |||||| Sbjct: 13354 acacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccattgagtt 13413 Query: 332 ttgaagcccccatgcaagcccaccaaccagagcttcttcagggagctaagggattcaatg 391 |||||| ||| |||| | || | ||||||||||||||||| | |||||| |||||| Sbjct: 13414 ttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggactcaatg 13473 Query: 392 ccttgagggaccttatccagcttcgacaacgacacaacatacaaaccttcgatgcacgga 451 || | |||||| |||||||||| || | |||||||| ||||||||||| ||| | ||| Sbjct: 13474 ccctcagggactatatccagctttgagagtgacacaacgtacaaaccttcaatggatgga 13533 Query: 452 agggcgccatcaatgatctttagctcgttgacattatgcatgtgctttagtgtaagactc 511 || || ||||| ||||||||||||| ||| ||||| |||||||||||| ||| || Sbjct: 13534 agtgccccatccatgatctttagctggttcacattgggcatgtgctttaagacaagtgtc 13593 Query: 512 ttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcactacgcatgttgttg 571 |||||||| ||||| || ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 13594 ttcaggtggggaaaaga--ctgtagaaagaaccaaaatgtttgcactatgcatgttgttc 13651 Query: 572 agtcgcagatacgtgaggttcggcaagtgtggtgcaagcatccctagtggatcctcgtct 631 |||| || ||| |||||||||||||| || | || ||||||||||||||| ||| Sbjct: 13652 agtctcaaataagtgaggttcggcaaatgcgaagcgagcatccctagtgga------tct 13705 Query: 632 tcccaaaggtgacaccagcttagagctagatacttgagattt 673 || | ||| |||||||| |||||||||||||| || |||||| Sbjct: 13706 tcaccaagatgacaccaacttagagctagatatttaagattt 13747 Score = 174 bits (88), Expect = 3e-40 Identities = 307/379 (81%), Gaps = 7/379 (1%) Strand = Plus / Minus Query: 355 caaccagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagctt 414 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 40005 caaccagagcttcttcagggaggcaagggattcaatgccttgagggactttatccagctt 39946 Query: 415 cgacaacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttag 474 | |||| || |||| || |||||||| ||||| |||||||||||||| |||| |||| Sbjct: 39945 ccacaatgatacaatgtataaaccttcaatgcatggaagggcgccatccgtgatgtttat 39886 Query: 475 ctcgttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgc 534 || |||||||| | |||||||| ||| |||| |||||||||| || || | ||||| Sbjct: 39885 ctggttgacatcaggcatgtgcattaacacaagagtcttcaggtgggggaacgcctctgc 39826 Query: 535 agaaagaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcgg 594 | |||||||||| | || | ||| |||||||||| |||| ||||| |||||||| | Sbjct: 39825 atcaagaaccaaagttttcgaactgtgcatgttgttcagtcttagataagtgaggtttga 39766 Query: 595 caagtgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttag 654 |||||||| ||| |||||||| |||||| ||||||| ||| | |||||| ||||| Sbjct: 39765 caagtgtgatgcgagcatccccagtgga------tcttccccaagattacaccaacttag 39712 Query: 655 agctagatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttccct 714 ||||| |||||||||| | |||||| ||||||||||| || | || ||| |||| Sbjct: 39711 agctaagtacttgagatgtgtagtgtggctaagaaatatcgggtag-tccaatgtgccct 39653 Query: 715 tggcccatttccctctgat 733 ||||||||| ||||||||| Sbjct: 39652 tggcccattgccctctgat 39634 Score = 159 bits (80), Expect = 2e-35 Identities = 302/375 (80%), Gaps = 7/375 (1%) Strand = Plus / Minus Query: 359 cagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgac 418 ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| | Sbjct: 89815 cagagcttctttagggaggcaagggattcaatgccttgagggactttatccagcttccgc 89756 Query: 419 aacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttagctcg 478 || || |||| || |||||||||||||| |||||||||||||| |||| |||| || | Sbjct: 89755 aatgatacaatgtataaaccttcgatgcatggaagggcgccatccgtgatgtttatctgg 89696 Query: 479 ttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgcagaa 538 ||||||| | |||||||| ||| |||| |||||||||| || || | |||||| | Sbjct: 89695 ttgacatcaggcatgtgcattaacacaagagtcttcaggtgggggaacgcctctgcatca 89636 Query: 539 agaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcggcaag 598 ||||||||| | || | ||| |||||||||| |||| ||||| |||||||| | |||| Sbjct: 89635 agaaccaaagttttcgaactgtgcatgttgttcagtcttagataagtgaggtttgacaag 89576 Query: 599 tgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttagagct 658 |||| ||| |||||||| |||||| ||||| | ||| |||||||| ||||||||| Sbjct: 89575 tgtgatgcgagcatccccagtgga------tcttcaccaagatgacaccaacttagagct 89522 Query: 659 agatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttcccttggc 718 | ||| || |||| | || ||||| ||||||||||| ||| | ||||| ||||| || Sbjct: 89521 aaatatttcagatatgtaccatggctatgaaatatcgggtagtct-agtgtgcccttagc 89463 Query: 719 ccatttccctctgat 733 ||||| ||||||||| Sbjct: 89462 ccattgccctctgat 89448 Score = 131 bits (66), Expect = 4e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 360 agagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgaca 419 ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| || Sbjct: 19882 agagcttcttcagggagttaagggactcaatgccttgagggaccttgtccagcttcggca 19941 Query: 420 acgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatcttta 473 | |||||| ||||||| ||| ||||| |||||||||||||| |||||||||| Sbjct: 19942 gcaacacaatgtacaaacattcaatgcatggaagggcgccatccatgatcttta 19995 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 641 tgacaccagcttagagctagatacttgagatttt 674 |||||||| ||||||||||| ||| ||||||||| Sbjct: 78949 tgacaccaacttagagctaggtacctgagatttt 78916
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 198 bits (100), Expect = 2e-47 Identities = 327/402 (81%), Gaps = 8/402 (1%) Strand = Plus / Plus Query: 272 acacgaacctcctgaacatgcaccatcttctgctgcattccgttcttgtcccactgagtt 331 ||||||| ||| |||||||| ||||||||| ||||||| ||| |||| ||| |||||| Sbjct: 6554144 acacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccattgagtt 6554203 Query: 332 ttgaagcccccatgcaagcccaccaaccagagcttcttcagggagctaagggattcaatg 391 |||||| ||| |||| | || | ||||||||||||||||| | |||||| |||||| Sbjct: 6554204 ttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggactcaatg 6554263 Query: 392 ccttgagggaccttatccagcttcgacaacgacacaacatacaaaccttcgatgcacgga 451 || | |||||| |||||||||| || | |||||||| ||||||||||| ||| | ||| Sbjct: 6554264 ccctcagggactatatccagctttgagagtgacacaacgtacaaaccttcaatggatgga 6554323 Query: 452 agggcgccatcaatgatctttagctcgttgacattatgcatgtgctttagtgtaagactc 511 || || ||||| ||||||||||||| ||| ||||| |||||||||||| ||| || Sbjct: 6554324 agtgccccatccatgatctttagctggttcacattgggcatgtgctttaagacaagtgtc 6554383 Query: 512 ttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcactacgcatgttgttg 571 |||||||| ||||| || ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 6554384 ttcaggtggggaaaaga--ctgtagaaagaaccaaaatgtttgcactatgcatgttgttc 6554441 Query: 572 agtcgcagatacgtgaggttcggcaagtgtggtgcaagcatccctagtggatcctcgtct 631 |||| || ||| |||||||||||||| || | || ||||||||||||||| ||| Sbjct: 6554442 agtctcaaataagtgaggttcggcaaatgcgaagcgagcatccctagtgga------tct 6554495 Query: 632 tcccaaaggtgacaccagcttagagctagatacttgagattt 673 || | ||| |||||||| |||||||||||||| || |||||| Sbjct: 6554496 tcaccaagatgacaccaacttagagctagatatttaagattt 6554537 Score = 174 bits (88), Expect = 3e-40 Identities = 307/379 (81%), Gaps = 7/379 (1%) Strand = Plus / Minus Query: 355 caaccagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagctt 414 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 6580795 caaccagagcttcttcagggaggcaagggattcaatgccttgagggactttatccagctt 6580736 Query: 415 cgacaacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttag 474 | |||| || |||| || |||||||| ||||| |||||||||||||| |||| |||| Sbjct: 6580735 ccacaatgatacaatgtataaaccttcaatgcatggaagggcgccatccgtgatgtttat 6580676 Query: 475 ctcgttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgc 534 || |||||||| | |||||||| ||| |||| |||||||||| || || | ||||| Sbjct: 6580675 ctggttgacatcaggcatgtgcattaacacaagagtcttcaggtgggggaacgcctctgc 6580616 Query: 535 agaaagaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcgg 594 | |||||||||| | || | ||| |||||||||| |||| ||||| |||||||| | Sbjct: 6580615 atcaagaaccaaagttttcgaactgtgcatgttgttcagtcttagataagtgaggtttga 6580556 Query: 595 caagtgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttag 654 |||||||| ||| |||||||| |||||| ||||||| ||| | |||||| ||||| Sbjct: 6580555 caagtgtgatgcgagcatccccagtgga------tcttccccaagattacaccaacttag 6580502 Query: 655 agctagatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttccct 714 ||||| |||||||||| | |||||| ||||||||||| || | || ||| |||| Sbjct: 6580501 agctaagtacttgagatgtgtagtgtggctaagaaatatcgggtag-tccaatgtgccct 6580443 Query: 715 tggcccatttccctctgat 733 ||||||||| ||||||||| Sbjct: 6580442 tggcccattgccctctgat 6580424 Score = 159 bits (80), Expect = 2e-35 Identities = 302/375 (80%), Gaps = 7/375 (1%) Strand = Plus / Minus Query: 359 cagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgac 418 ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| | Sbjct: 6630605 cagagcttctttagggaggcaagggattcaatgccttgagggactttatccagcttccgc 6630546 Query: 419 aacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttagctcg 478 || || |||| || |||||||||||||| |||||||||||||| |||| |||| || | Sbjct: 6630545 aatgatacaatgtataaaccttcgatgcatggaagggcgccatccgtgatgtttatctgg 6630486 Query: 479 ttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgcagaa 538 ||||||| | |||||||| ||| |||| |||||||||| || || | |||||| | Sbjct: 6630485 ttgacatcaggcatgtgcattaacacaagagtcttcaggtgggggaacgcctctgcatca 6630426 Query: 539 agaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcggcaag 598 ||||||||| | || | ||| |||||||||| |||| ||||| |||||||| | |||| Sbjct: 6630425 agaaccaaagttttcgaactgtgcatgttgttcagtcttagataagtgaggtttgacaag 6630366 Query: 599 tgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttagagct 658 |||| ||| |||||||| |||||| ||||| | ||| |||||||| ||||||||| Sbjct: 6630365 tgtgatgcgagcatccccagtgga------tcttcaccaagatgacaccaacttagagct 6630312 Query: 659 agatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttcccttggc 718 | ||| || |||| | || ||||| ||||||||||| ||| | ||||| ||||| || Sbjct: 6630311 aaatatttcagatatgtaccatggctatgaaatatcgggtagtct-agtgtgcccttagc 6630253 Query: 719 ccatttccctctgat 733 ||||| ||||||||| Sbjct: 6630252 ccattgccctctgat 6630238 Score = 131 bits (66), Expect = 4e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 360 agagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgaca 419 ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| || Sbjct: 6560672 agagcttcttcagggagttaagggactcaatgccttgagggaccttgtccagcttcggca 6560731 Query: 420 acgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatcttta 473 | |||||| ||||||| ||| ||||| |||||||||||||| |||||||||| Sbjct: 6560732 gcaacacaatgtacaaacattcaatgcatggaagggcgccatccatgatcttta 6560785 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 6818085 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 6818026 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 6818025 gacacaacatataaaccttc 6818006 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 365 ttcttcagggagctaagggattcaatgccttgagggac 402 ||||| ||||||||||||||||||||||||| |||||| Sbjct: 6455151 ttcttaagggagctaagggattcaatgccttcagggac 6455188 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 6817937 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 6817888 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 637 aaggtgacaccagcttagagctagatactt 666 ||||||||||| |||||||||||||||||| Sbjct: 6455423 aaggtgacaccggcttagagctagatactt 6455452 Score = 48.1 bits (24), Expect = 0.042 Identities = 36/40 (90%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgaggga 401 |||||||||||| | |||||||| |||||||||| ||||| Sbjct: 6806640 agcttcttcaggtacctaagggactcaatgccttcaggga 6806601 Score = 44.1 bits (22), Expect = 0.66 Identities = 43/50 (86%) Strand = Plus / Minus Query: 344 tgcaagcccaccaaccagagcttcttcagggagctaagggattcaatgcc 393 |||||||||| || ||| || |||||||||||| || |||||||||||| Sbjct: 6768632 tgcaagcccagcagccatagtttcttcagggagagaatggattcaatgcc 6768583 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 641 tgacaccagcttagagctagatacttgagatttt 674 |||||||| ||||||||||| ||| ||||||||| Sbjct: 6619739 tgacaccaacttagagctaggtacctgagatttt 6619706 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 360 agagcttcttcagggagctaaggga 384 ||||||||||||||||||| ||||| Sbjct: 6527850 agagcttcttcagggagctgaggga 6527874
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 198 bits (100), Expect = 2e-47 Identities = 327/402 (81%), Gaps = 8/402 (1%) Strand = Plus / Plus Query: 272 acacgaacctcctgaacatgcaccatcttctgctgcattccgttcttgtcccactgagtt 331 ||||||| ||| |||||||| ||||||||| ||||||| ||| |||| ||| |||||| Sbjct: 6620611 acacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccattgagtt 6620670 Query: 332 ttgaagcccccatgcaagcccaccaaccagagcttcttcagggagctaagggattcaatg 391 |||||| ||| |||| | || | ||||||||||||||||| | |||||| |||||| Sbjct: 6620671 ttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggactcaatg 6620730 Query: 392 ccttgagggaccttatccagcttcgacaacgacacaacatacaaaccttcgatgcacgga 451 || | |||||| |||||||||| || | |||||||| ||||||||||| ||| | ||| Sbjct: 6620731 ccctcagggactatatccagctttgagagtgacacaacgtacaaaccttcaatggatgga 6620790 Query: 452 agggcgccatcaatgatctttagctcgttgacattatgcatgtgctttagtgtaagactc 511 || || ||||| ||||||||||||| ||| ||||| |||||||||||| ||| || Sbjct: 6620791 agtgccccatccatgatctttagctggttcacattgggcatgtgctttaagacaagtgtc 6620850 Query: 512 ttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcactacgcatgttgttg 571 |||||||| ||||| || ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 6620851 ttcaggtggggaaaaga--ctgtagaaagaaccaaaatgtttgcactatgcatgttgttc 6620908 Query: 572 agtcgcagatacgtgaggttcggcaagtgtggtgcaagcatccctagtggatcctcgtct 631 |||| || ||| |||||||||||||| || | || ||||||||||||||| ||| Sbjct: 6620909 agtctcaaataagtgaggttcggcaaatgcgaagcgagcatccctagtgga------tct 6620962 Query: 632 tcccaaaggtgacaccagcttagagctagatacttgagattt 673 || | ||| |||||||| |||||||||||||| || |||||| Sbjct: 6620963 tcaccaagatgacaccaacttagagctagatatttaagattt 6621004 Score = 174 bits (88), Expect = 3e-40 Identities = 307/379 (81%), Gaps = 7/379 (1%) Strand = Plus / Minus Query: 355 caaccagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagctt 414 |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| Sbjct: 6647262 caaccagagcttcttcagggaggcaagggattcaatgccttgagggactttatccagctt 6647203 Query: 415 cgacaacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttag 474 | |||| || |||| || |||||||| ||||| |||||||||||||| |||| |||| Sbjct: 6647202 ccacaatgatacaatgtataaaccttcaatgcatggaagggcgccatccgtgatgtttat 6647143 Query: 475 ctcgttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgc 534 || |||||||| | |||||||| ||| |||| |||||||||| || || | ||||| Sbjct: 6647142 ctggttgacatcaggcatgtgcattaacacaagagtcttcaggtgggggaacgcctctgc 6647083 Query: 535 agaaagaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcgg 594 | |||||||||| | || | ||| |||||||||| |||| ||||| |||||||| | Sbjct: 6647082 atcaagaaccaaagttttcgaactgtgcatgttgttcagtcttagataagtgaggtttga 6647023 Query: 595 caagtgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttag 654 |||||||| ||| |||||||| |||||| ||||||| ||| | |||||| ||||| Sbjct: 6647022 caagtgtgatgcgagcatccccagtgga------tcttccccaagattacaccaacttag 6646969 Query: 655 agctagatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttccct 714 ||||| |||||||||| | |||||| ||||||||||| || | || ||| |||| Sbjct: 6646968 agctaagtacttgagatgtgtagtgtggctaagaaatatcgggtag-tccaatgtgccct 6646910 Query: 715 tggcccatttccctctgat 733 ||||||||| ||||||||| Sbjct: 6646909 tggcccattgccctctgat 6646891 Score = 159 bits (80), Expect = 2e-35 Identities = 302/375 (80%), Gaps = 7/375 (1%) Strand = Plus / Minus Query: 359 cagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgac 418 ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| | Sbjct: 6697072 cagagcttctttagggaggcaagggattcaatgccttgagggactttatccagcttccgc 6697013 Query: 419 aacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttagctcg 478 || || |||| || |||||||||||||| |||||||||||||| |||| |||| || | Sbjct: 6697012 aatgatacaatgtataaaccttcgatgcatggaagggcgccatccgtgatgtttatctgg 6696953 Query: 479 ttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgcagaa 538 ||||||| | |||||||| ||| |||| |||||||||| || || | |||||| | Sbjct: 6696952 ttgacatcaggcatgtgcattaacacaagagtcttcaggtgggggaacgcctctgcatca 6696893 Query: 539 agaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcggcaag 598 ||||||||| | || | ||| |||||||||| |||| ||||| |||||||| | |||| Sbjct: 6696892 agaaccaaagttttcgaactgtgcatgttgttcagtcttagataagtgaggtttgacaag 6696833 Query: 599 tgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttagagct 658 |||| ||| |||||||| |||||| ||||| | ||| |||||||| ||||||||| Sbjct: 6696832 tgtgatgcgagcatccccagtgga------tcttcaccaagatgacaccaacttagagct 6696779 Query: 659 agatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttcccttggc 718 | ||| || |||| | || ||||| ||||||||||| ||| | ||||| ||||| || Sbjct: 6696778 aaatatttcagatatgtaccatggctatgaaatatcgggtagtct-agtgtgcccttagc 6696720 Query: 719 ccatttccctctgat 733 ||||| ||||||||| Sbjct: 6696719 ccattgccctctgat 6696705 Score = 131 bits (66), Expect = 4e-27 Identities = 102/114 (89%) Strand = Plus / Plus Query: 360 agagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgaca 419 ||||||||||||||||| ||||||| |||||||||||||||||||| |||||||||| || Sbjct: 6627139 agagcttcttcagggagttaagggactcaatgccttgagggaccttgtccagcttcggca 6627198 Query: 420 acgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatcttta 473 | |||||| ||||||| ||| ||||| |||||||||||||| |||||||||| Sbjct: 6627199 gcaacacaatgtacaaacattcaatgcatggaagggcgccatccatgatcttta 6627252 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 6884552 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 6884493 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 6884492 gacacaacatataaaccttc 6884473 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 365 ttcttcagggagctaagggattcaatgccttgagggac 402 ||||| ||||||||||||||||||||||||| |||||| Sbjct: 6521618 ttcttaagggagctaagggattcaatgccttcagggac 6521655 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 6884404 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 6884355 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 637 aaggtgacaccagcttagagctagatactt 666 ||||||||||| |||||||||||||||||| Sbjct: 6521890 aaggtgacaccggcttagagctagatactt 6521919 Score = 48.1 bits (24), Expect = 0.042 Identities = 36/40 (90%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgaggga 401 |||||||||||| | |||||||| |||||||||| ||||| Sbjct: 6873107 agcttcttcaggtacctaagggactcaatgccttcaggga 6873068 Score = 44.1 bits (22), Expect = 0.66 Identities = 43/50 (86%) Strand = Plus / Minus Query: 344 tgcaagcccaccaaccagagcttcttcagggagctaagggattcaatgcc 393 |||||||||| || ||| || |||||||||||| || |||||||||||| Sbjct: 6835091 tgcaagcccagcagccatagtttcttcagggagagaatggattcaatgcc 6835042 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Minus Query: 641 tgacaccagcttagagctagatacttgagatttt 674 |||||||| ||||||||||| ||| ||||||||| Sbjct: 6686206 tgacaccaacttagagctaggtacctgagatttt 6686173 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 360 agagcttcttcagggagctaaggga 384 ||||||||||||||||||| ||||| Sbjct: 6594317 agagcttcttcagggagctgaggga 6594341
>gb|AF456245.1| Oryza sativa (japonica cultivar-group) NBS-LRR-like protein (YR5) mRNA, complete cds Length = 3134 Score = 190 bits (96), Expect = 5e-45 Identities = 327/402 (81%), Gaps = 9/402 (2%) Strand = Plus / Minus Query: 272 acacgaacctcctgaacatgcaccatcttctgctgcattccgttcttgtcccactgagtt 331 ||||||| ||| |||||||| ||||||||| ||||||| ||| |||| ||| |||||| Sbjct: 2861 acacgaatctctggaacatgctgcatcttctgatgcattctgtttttgtgccattgagtt 2802 Query: 332 ttgaagcccccatgcaagcccaccaaccagagcttcttcagggagctaagggattcaatg 391 |||||| ||| |||| | || | ||||||||||||||||| | |||||| |||||| Sbjct: 2801 ttgaagtccctgtgcaggtacagaagccagagcttcttcagggtccgaagggactcaatg 2742 Query: 392 ccttgagggaccttatccagcttcgacaacgacacaacatacaaaccttcgatgcacgga 451 || | |||||| |||||||||| || | |||||||| ||||||||||| ||| | ||| Sbjct: 2741 ccctcagggactatatccagctttgagagtgacacaacgtacaaaccttcaatggatgga 2682 Query: 452 agggcgccatcaatgatctttagctcgttgacattatgcatgtgctttagtgtaagactc 511 || || ||||| ||||||||||||| ||| ||||| |||||||||||| ||| || Sbjct: 2681 agtgccccatccatgatctttagctggttcacattgggcatgtgctttaagacaagtgtc 2622 Query: 512 ttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcactacgcatgttgttg 571 |||||||| ||||| || ||| ||||||||||||||||||||||||| |||||||||| Sbjct: 2621 ttcaggtggggaaaaga--ctg-agaaagaaccaaaatgtttgcactatgcatgttgttc 2565 Query: 572 agtcgcagatacgtgaggttcggcaagtgtggtgcaagcatccctagtggatcctcgtct 631 |||| || ||| |||||||||||||| || | || ||||||||||||||| ||| Sbjct: 2564 agtctcaaataagtgaggttcggcaaatgcgaagcgagcatccctagtgga------tct 2511 Query: 632 tcccaaaggtgacaccagcttagagctagatacttgagattt 673 || | ||| |||||||| |||||||||||||| || |||||| Sbjct: 2510 tcaccaagatgacaccaacttagagctagatatttaagattt 2469
>dbj|AK101773.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064L16, full insert sequence Length = 3374 Score = 159 bits (80), Expect = 2e-35 Identities = 302/375 (80%), Gaps = 7/375 (1%) Strand = Plus / Minus Query: 359 cagagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgac 418 ||||||||||| |||||| |||||||||||||||||||||||| |||||||||||| | Sbjct: 2924 cagagcttctttagggaggcaagggattcaatgccttgagggactttatccagcttccgc 2865 Query: 419 aacgacacaacatacaaaccttcgatgcacggaagggcgccatcaatgatctttagctcg 478 || || |||| || |||||||||||||| |||||||||||||| |||| |||| || | Sbjct: 2864 aatgatacaatgtataaaccttcgatgcatggaagggcgccatccgtgatgtttatctgg 2805 Query: 479 ttgacattatgcatgtgctttagtgtaagactcttcaggtgaggaaaggaatctgcagaa 538 ||||||| | |||||||| ||| |||| |||||||||| || || | |||||| | Sbjct: 2804 ttgacatcaggcatgtgcattaacacaagagtcttcaggtgggggaacgcctctgcatca 2745 Query: 539 agaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcggcaag 598 ||||||||| | || | ||| |||||||||| |||| ||||| |||||||| | |||| Sbjct: 2744 agaaccaaagttttcgaactgtgcatgttgttcagtcttagataagtgaggtttgacaag 2685 Query: 599 tgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttagagct 658 |||| ||| |||||||| |||||| ||||| | ||| |||||||| ||||||||| Sbjct: 2684 tgtgatgcgagcatccccagtgga------tcttcaccaagatgacaccaacttagagct 2631 Query: 659 agatacttgagattttctccgtggctgcgaaatatcgggcagtttcagtgttcccttggc 718 | ||| || |||| | || ||||| ||||||||||| ||| | ||||| ||||| || Sbjct: 2630 aaatatttcagatatgtaccatggctatgaaatatcgggtagtct-agtgtgcccttagc 2572 Query: 719 ccatttccctctgat 733 ||||| ||||||||| Sbjct: 2571 ccattgccctctgat 2557
>gb|AY986485.1| Zea mays NBS-LRR type disease resistance protein (MRPR1) mRNA, complete cds Length = 3256 Score = 95.6 bits (48), Expect = 2e-16 Identities = 78/88 (88%) Strand = Plus / Minus Query: 360 agagcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgaca 419 |||||||||||||||||| ||| ||||||||||||||||||||||||||||||| | || Sbjct: 2872 agagcttcttcagggagcgaagcgattcaatgccttgagggaccttatccagctccacca 2813 Query: 420 acgacacaacatacaaaccttcgatgca 447 ||||||| |||| |||||||||||| Sbjct: 2812 gtgacacaatgtacagaccttcgatgca 2785 Score = 89.7 bits (45), Expect = 1e-14 Identities = 110/132 (83%), Gaps = 6/132 (4%) Strand = Plus / Minus Query: 538 aagaaccaaaatgtttgcactacgcatgttgttgagtcgcagatacgtgaggttcggcaa 597 ||||||||| || |||||||||||||||||||||||| ||||| |||||||| ||||| Sbjct: 2694 aagaaccaatatacttgcactacgcatgttgttgagtctcagatttgtgaggtttggcaa 2635 Query: 598 gtgtggtgcaagcatccctagtggatcctcgtcttcccaaaggtgacaccagcttagagc 657 ||||| || |||||| | |||||| ||||| ||||||| |||||||||||||| Sbjct: 2634 atgtggagcgagcatctccagtgga------tcttctgaaaggtggcaccagcttagagc 2581 Query: 658 tagatacttgag 669 || ||||||||| Sbjct: 2580 taaatacttgag 2569
>gb|AC119670.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0007H22, complete sequence Length = 160938 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 68766 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 68825 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 68826 gacacaacatataaaccttc 68845 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 68914 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 68963 Score = 48.1 bits (24), Expect = 0.042 Identities = 36/40 (90%) Strand = Plus / Plus Query: 362 agcttcttcagggagctaagggattcaatgccttgaggga 401 |||||||||||| | |||||||| |||||||||| ||||| Sbjct: 80211 agcttcttcaggtacctaagggactcaatgccttcaggga 80250 Score = 44.1 bits (22), Expect = 0.66 Identities = 43/50 (86%) Strand = Plus / Plus Query: 344 tgcaagcccaccaaccagagcttcttcagggagctaagggattcaatgcc 393 |||||||||| || ||| || |||||||||||| || |||||||||||| Sbjct: 118227 tgcaagcccagcagccatagtttcttcagggagagaatggattcaatgcc 118276
>dbj|AK111854.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033009C22, full insert sequence Length = 4632 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 207 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 266 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 267 gacacaacatataaaccttc 286 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 355 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 404
>dbj|AK111665.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157J04, full insert sequence Length = 3070 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 2673 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 2614 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 2613 gacacaacatataaaccttc 2594 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 2525 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 2476
>dbj|AK107455.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-128-C09, full insert sequence Length = 1845 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Plus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 208 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 267 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 268 gacacaacatataaaccttc 287 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Plus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 356 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 405
>dbj|AB019186.1| Oryza sativa (japonica cultivar-group) mRNA for RPR1, complete cds Length = 3012 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 2655 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 2596 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 2595 gacacaacatataaaccttc 2576 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 2507 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 2458
>dbj|AB019240.2| Oryza sativa (indica cultivar-group) mRNA for RPR1h, complete cds Length = 3034 Score = 63.9 bits (32), Expect = 7e-07 Identities = 68/80 (85%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgagggaccttatccagcttcgacaac 421 ||||||||||| | ||||| || ||||||||||||||||| || |||| ||| | ||| Sbjct: 2653 agcttcttcagatacctaagagactcaatgccttgagggacattgtccaactttggcaat 2594 Query: 422 gacacaacatacaaaccttc 441 ||||||||||| |||||||| Sbjct: 2593 gacacaacatataaaccttc 2574 Score = 52.0 bits (26), Expect = 0.003 Identities = 44/50 (88%) Strand = Plus / Minus Query: 510 tcttcaggtgaggaaaggaatctgcagaaagaaccaaaatgtttgcacta 559 ||||||| ||||| ||| ||||||||||||||||||| || |||||||| Sbjct: 2505 tcttcagctgagggaagcaatctgcagaaagaaccaaggtgcttgcacta 2456
>gb|AC133005.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0052C16, complete sequence Length = 137872 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Plus Query: 365 ttcttcagggagctaagggattcaatgccttgagggac 402 ||||| ||||||||||||||||||||||||| |||||| Sbjct: 126545 ttcttaagggagctaagggattcaatgccttcagggac 126582 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Plus Query: 637 aaggtgacaccagcttagagctagatactt 666 ||||||||||| |||||||||||||||||| Sbjct: 126817 aaggtgacaccggcttagagctagatactt 126846
>gb|AC119072.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0073N20 BAC genomic sequence, complete sequence Length = 147289 Score = 60.0 bits (30), Expect = 1e-05 Identities = 36/38 (94%) Strand = Plus / Minus Query: 365 ttcttcagggagctaagggattcaatgccttgagggac 402 ||||| ||||||||||||||||||||||||| |||||| Sbjct: 89079 ttcttaagggagctaagggattcaatgccttcagggac 89042 Score = 52.0 bits (26), Expect = 0.003 Identities = 29/30 (96%) Strand = Plus / Minus Query: 637 aaggtgacaccagcttagagctagatactt 666 ||||||||||| |||||||||||||||||| Sbjct: 88807 aaggtgacaccggcttagagctagatactt 88778 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 360 agagcttcttcagggagctaaggga 384 ||||||||||||||||||| ||||| Sbjct: 16380 agagcttcttcagggagctgaggga 16356
>ref|XM_474915.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2889 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Minus Query: 629 tcttcccaaaggtgacaccagcttagagctagatacttgagattt 673 ||||||| ||| ||||||||||||||||||| |||||||||||| Sbjct: 2270 tcttccccaagatgacaccagcttagagctaagtacttgagattt 2226
>emb|AL662948.4|OSJN00150 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0060B20, complete sequence Length = 147254 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 629 tcttcccaaaggtgacaccagcttagagctagatacttgagattt 673 ||||||| ||| ||||||||||||||||||| |||||||||||| Sbjct: 138248 tcttccccaagatgacaccagcttagagctaagtacttgagattt 138292
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 58.0 bits (29), Expect = 4e-05 Identities = 41/45 (91%) Strand = Plus / Plus Query: 629 tcttcccaaaggtgacaccagcttagagctagatacttgagattt 673 ||||||| ||| ||||||||||||||||||| |||||||||||| Sbjct: 7932551 tcttccccaagatgacaccagcttagagctaagtacttgagattt 7932595 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgcattcagagtttcagacac 275 ||||||||||||||||||||| Sbjct: 21430438 cgcattcagagtttcagacac 21430418
>gb|BT009286.1| Triticum aestivum clone wlm0.pk0014.a2:fis, full insert mRNA sequence Length = 2185 Score = 50.1 bits (25), Expect = 0.011 Identities = 28/29 (96%) Strand = Plus / Minus Query: 644 caccagcttagagctagatacttgagatt 672 |||||||||||||| |||||||||||||| Sbjct: 1526 caccagcttagagccagatacttgagatt 1498
>gb|AC119071.1| Oryza sativa ssp. japonica cv. Nipponbare OSJNBa0044D15 BAC genomic sequence, complete sequence Length = 144544 Score = 48.1 bits (24), Expect = 0.042 Identities = 36/40 (90%) Strand = Plus / Minus Query: 362 agcttcttcagggagctaagggattcaatgccttgaggga 401 |||||||||||| | |||||||| |||||||||| ||||| Sbjct: 137488 agcttcttcaggtacctaagggactcaatgccttcaggga 137449 Score = 44.1 bits (22), Expect = 0.66 Identities = 43/50 (86%) Strand = Plus / Minus Query: 344 tgcaagcccaccaaccagagcttcttcagggagctaagggattcaatgcc 393 |||||||||| || ||| || |||||||||||| || |||||||||||| Sbjct: 99480 tgcaagcccagcagccatagtttcttcagggagagaatggattcaatgcc 99431
>gb|AC144767.4| Mus musculus BAC clone RP23-82F8 from chromosome 6, complete sequence Length = 229027 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 376 gctaagggattcaatgccttgag 398 ||||||||||||||||||||||| Sbjct: 9215 gctaagggattcaatgccttgag 9193
>gb|AC093176.6| Mus musculus Strain C57BL6/J chromosome 6 BAC, RP23-109H11, Complete Sequence, complete sequence Length = 192227 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 376 gctaagggattcaatgccttgag 398 ||||||||||||||||||||||| Sbjct: 136855 gctaagggattcaatgccttgag 136877
>gb|AC163627.4| Mus musculus BAC clone RP23-341E13 from chromosome 6, complete sequence Length = 191467 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Plus Query: 376 gctaagggattcaatgccttgag 398 ||||||||||||||||||||||| Sbjct: 54830 gctaagggattcaatgccttgag 54852
>dbj|BS000029.1| Pan troglodytes chromosome 22 clone:RP43-172K02, map 22, complete sequences Length = 173573 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 538 aagaaccaaaatgtttgcacta 559 |||||||||||||||||||||| Sbjct: 104258 aagaaccaaaatgtttgcacta 104279
>dbj|AK102193.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087C03, full insert sequence Length = 2538 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Plus Query: 641 tgacaccagcttagagctagatacttgagatttt 674 |||||||| ||||||||||| ||| ||||||||| Sbjct: 833 tgacaccaacttagagctaggtacctgagatttt 866
>dbj|AK101375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033036A06, full insert sequence Length = 2603 Score = 44.1 bits (22), Expect = 0.66 Identities = 31/34 (91%) Strand = Plus / Plus Query: 641 tgacaccagcttagagctagatacttgagatttt 674 |||||||| ||||||||||| ||| ||||||||| Sbjct: 856 tgacaccaacttagagctaggtacctgagatttt 889
>emb|AL163213.2|HS21C013 Homo sapiens chromosome 21 segment HS21C013 Length = 340000 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 538 aagaaccaaaatgtttgcacta 559 |||||||||||||||||||||| Sbjct: 13272 aagaaccaaaatgtttgcacta 13293
>dbj|AP000473.2| Homo sapiens genomic DNA, chromosome 21q21.1-q21.2, clone:B291N6, LL56-APP region, complete sequence Length = 155448 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Plus Query: 538 aagaaccaaaatgtttgcacta 559 |||||||||||||||||||||| Sbjct: 98777 aagaaccaaaatgtttgcacta 98798
>ref|NM_001005918.1| Homo sapiens ATPase, Cu++ transporting, beta polypeptide (ATP7B), transcript variant 2, mRNA Length = 6023 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 1676 gaaaggaatctgcagaaagaa 1696
>ref|NM_000053.2| Homo sapiens ATPase, Cu++ transporting, beta polypeptide (ATP7B), transcript variant 1, mRNA Length = 6644 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 1676 gaaaggaatctgcagaaagaa 1696
>emb|AL606458.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084A10, complete sequence Length = 144811 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 cgcattcagagtttcagacac 275 ||||||||||||||||||||| Sbjct: 80188 cgcattcagagtttcagacac 80168
>emb|AL138821.12| Human DNA sequence from clone RP11-381L18 on chromosome 13 Contains part of the ATP7B gene for ATPase Cu++ transporting, beta polypeptide (Wilson disease) and a fatty acid binding protein pseudogene, complete sequence Length = 41669 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 30548 gaaaggaatctgcagaaagaa 30528
>emb|AL928666.7| Mouse DNA sequence from clone RP23-216G14 on chromosome 11, complete sequence Length = 91110 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 292 caccatcttctgctgcattcc 312 ||||||||||||||||||||| Sbjct: 54432 caccatcttctgctgcattcc 54452
>ref|NM_183395.1| Homo sapiens cold autoinflammatory syndrome 1 (CIAS1), transcript variant 2, mRNA Length = 4142 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 caccaaccagagcttcttcag 372 ||||||||||||||||||||| Sbjct: 3080 caccaaccagagcttcttcag 3060
>gb|AE005895.1| Caulobacter crescentus CB15 section 221 of 359 of the complete genome Length = 12430 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 ccaaccagagcttcttcaggg 374 ||||||||||||||||||||| Sbjct: 4737 ccaaccagagcttcttcaggg 4717
>gb|AY092033.1| Homo sapiens NALP3 intermediate isoform (NALP3) mRNA, complete cds Length = 3237 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 caccaaccagagcttcttcag 372 ||||||||||||||||||||| Sbjct: 2496 caccaaccagagcttcttcag 2476
>gb|AC091577.9| Homo sapiens chromosome 18, clone RP11-704J2, complete sequence Length = 158840 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 712 ccttggcccatttccctctga 732 ||||||||||||||||||||| Sbjct: 40288 ccttggcccatttccctctga 40308
>gb|AF427617.1|AF427617 Homo sapiens cryopyrin (CIAS1) mRNA, complete cds, alternatively spliced Length = 3828 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 caccaaccagagcttcttcag 372 ||||||||||||||||||||| Sbjct: 3080 caccaaccagagcttcttcag 3060
>gb|AF054176.1|AF054176 Homo sapiens angiotensin/vasopressin receptor AII/AVP mRNA, complete cds Length = 2218 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 caccaaccagagcttcttcag 372 ||||||||||||||||||||| Sbjct: 1159 caccaaccagagcttcttcag 1139
>gb|AC015963.8|AC015963 Homo sapiens chromosome , clone RP11-112B21, complete sequence Length = 172657 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 712 ccttggcccatttccctctga 732 ||||||||||||||||||||| Sbjct: 171248 ccttggcccatttccctctga 171228
>gb|DQ015922.1| Homo sapiens Wilson's disease protein (ATP7B) mRNA, complete cds Length = 4065 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 1186 gaaaggaatctgcagaaagaa 1206
>gb|U03464.1|HSU03464 Human P-type ATPase ATP7B mRNA, complete cds Length = 4449 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 1519 gaaaggaatctgcagaaagaa 1539
>dbj|AB208891.1| Homo sapiens mRNA for Cryopyrin deletion 4 isoform variant protein Length = 4008 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 352 caccaaccagagcttcttcag 372 ||||||||||||||||||||| Sbjct: 3260 caccaaccagagcttcttcag 3240
>dbj|AB209461.1| Homo sapiens mRNA for ATPase, Cu++ transporting, beta polypeptide isoform a variant protein Length = 5655 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 11 gaaaggaatctgcagaaagaa 31
>gb|U11700.1|HSU11700 Human copper transporting ATPase mRNA, complete cds Length = 6642 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 1681 gaaaggaatctgcagaaagaa 1701
>gb|L25591.1|HUMPWD Homo sapiens (PWD) gene mRNA, 3' end Length = 5413 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 1074 gaaaggaatctgcagaaagaa 1094
>gb|L25442.1|HUMWND Human Wilson disease-associated protein (WND) mRNA, partial cds Length = 1053 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 522 gaaaggaatctgcagaaagaa 542 ||||||||||||||||||||| Sbjct: 59 gaaaggaatctgcagaaagaa 79 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,156,869 Number of Sequences: 3902068 Number of extensions: 6156869 Number of successful extensions: 108925 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 49 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 108616 Number of HSP's gapped (non-prelim): 300 length of query: 748 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 725 effective length of database: 17,143,297,704 effective search space: 12428890835400 effective search space used: 12428890835400 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)
