ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4m14 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY237103.1| Triticum aestivum cytosolic starch phosphorylase mRNA, partial cds Length = 1591 Score = 842 bits (425), Expect = 0.0 Identities = 489/509 (96%), Gaps = 1/509 (0%) Strand = Plus / Minus Query: 90 cgcatcctctatgcacttcaaaagtgcagcagaatacacaacacaacaggcttcgtacgt 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1456 cgcatcctctatgcacttcaaaagtgcagcagaatacacaacacaacaggcttcgtacgt 1397 Query: 150 tgcttcattcttctcagctacaacggaagcaggggttattcaccgtggatca-tataaga 208 |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| Sbjct: 1396 tgcttcattcttctcagctacaacggaagcaggggttattcaccatggaccagtataagg 1337 Query: 209 tccttattactgccaagcatcatcgtccaatgcctcttgatcgtgcctcctcttcatgga 268 ||||||||||||||| |||||||| |||| |||||||||| | |||||||||||||| Sbjct: 1336 tccttattactgccacgcatcatcatccatcacctcttgatcacgtctcctcttcatgga 1277 Query: 269 acagggcaggccgaaatgccccagatctccttcgcgtactggtcgatggtgcggtcgctg 328 |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 1276 acagggcaagccgaaatgccccagatctccttcgcatattggtcgatggtgcggtcgctg 1217 Query: 329 ctgaatttgccgcttccagccgtgttcaagatggacatcttgatccatttcttcttgtcc 388 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1216 ctgaacttgccgcttccagccgtgttcaagatggacatcttgatccatttcttcttgtcc 1157 Query: 389 ttgtaggcttcatcaacccgggcctgtgcctcaatgtagcttgggaagtcatagccaaca 448 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct: 1156 ttgtaggcttcatcaacccgggcctgtgcgtcaatgtagcttgggaagtcatagccaaca 1097 Query: 449 aggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagaggagtg 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1096 aggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagaggagtg 1037 Query: 509 tagtcataggtgccgaaagcaccactcctgataaactgcttggcttcttcaaagcgtggg 568 ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 1036 tagtcgtaggtgccgaaagcaccactcctgataaactgtttggcttcttcaaagcgtggg 977 Query: 569 tctggcttgaacaagccattttccctttc 597 ||||||||||||||||||| ||||||||| Sbjct: 976 tctggcttgaacaagccatcttccctttc 948 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/65 (90%), Gaps = 3/65 (4%) Strand = Plus / Minus Query: 1 ttttattgggaacctggatgattccgcc-ttcc-gttccggat-aaaatagtacggttac 57 |||||||| ||||||||||||||||||| |||| |||| |||| ||||||||| |||||| Sbjct: 1548 ttttattgagaacctggatgattccgccattccggttcaggatcaaaatagtatggttac 1489 Query: 58 agacc 62 ||||| Sbjct: 1488 agacc 1484
>gb|AF275551.1| Triticum aestivum alpha 1,4-glucan phosphorylase mRNA, complete cds Length = 2856 Score = 823 bits (415), Expect = 0.0 Identities = 482/503 (95%), Gaps = 1/503 (0%) Strand = Plus / Minus Query: 90 cgcatcctctatgcacttcaaaagtgcagcagaatacacaacacaacaggcttcgtacgt 149 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2729 cgcatcctctatgcacttcaaaagtgcagcagaatacacaacacaacaggcttcgtacgt 2670 Query: 150 tgcttcattcttctcagctacaacggaagcaggggttattcaccgtggatca-tataaga 208 |||||||||||||||||||||||||||||||||||||||||||| |||| || |||||| Sbjct: 2669 tgcttcattcttctcagctacaacggaagcaggggttattcaccatggaccagtataagg 2610 Query: 209 tccttattactgccaagcatcatcgtccaatgcctcttgatcgtgcctcctcttcatgga 268 ||||||||||||||| |||||||| |||| |||||||||| | |||||||||||||| Sbjct: 2609 tccttattactgccacgcatcatcatccatcacctcttgatcacgtctcctcttcatgga 2550 Query: 269 acagggcaggccgaaatgccccagatctccttcgcgtactggtcgatggtgcggtcgctg 328 |||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct: 2549 acagggcaagccgaaatgccccagatctccttcgcatattggtcgatggtgcggtcgctg 2490 Query: 329 ctgaatttgccgcttccagccgtgttcaagatggacatcttgatccatttcttcttgtcc 388 ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct: 2489 ctgaacttgccgcttccagccgtgttcaagatggacatcttgacccatttcttcttgtcc 2430 Query: 389 ttgtaggcttcatcaacccgggcctgtgcctcaatgtagcttgggaagtcatagccaaca 448 ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| Sbjct: 2429 ttgtaggcttcatcaacccgggcctgtgcatcaatgtagcttggaaagtcatagccaaca 2370 Query: 449 aggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagaggagtg 508 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2369 aggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagaggagtg 2310 Query: 509 tagtcataggtgccgaaagcaccactcctgataaactgcttggcttcttcaaagcgtggg 568 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 2309 tagtcgtaggtgccgaaagcaccactcctgataaactgcttggcttcttcgaagcgtggg 2250 Query: 569 tctggcttgaacaagccattttc 591 ||||||||||||||||||||||| Sbjct: 2249 tctggcttgaacaagccattttc 2227 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/65 (90%), Gaps = 3/65 (4%) Strand = Plus / Minus Query: 1 ttttattgggaacctggatgattccgcc-ttcc-gttccggat-aaaatagtacggttac 57 |||||||| ||||||||||||||||||| |||| |||| |||| ||||||||| |||||| Sbjct: 2821 ttttattgagaacctggatgattccgccattccggttcaggatcaaaatagtatggttac 2762 Query: 58 agacc 62 ||||| Sbjct: 2761 agacc 2757
>gb|BT009122.1| Triticum aestivum clone wl1n.pk0013.c2:fis, full insert mRNA sequence Length = 978 Score = 813 bits (410), Expect = 0.0 Identities = 488/512 (95%), Gaps = 4/512 (0%) Strand = Plus / Minus Query: 90 cgcatcctctatgcacttcaaaagtgcagcagaatacacaacacaaca---ggcttcgta 146 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 855 cgcatcctctatgcacttcaaaagtgcagcagaatacacaacacaacaacaggcttcgta 796 Query: 147 cgttgcttcattcttctcagctacaacggaagcaggggttattcaccgtggatca-tata 205 ||||||||||||||||||||||||||||||||||||||||||||||| |||| || || | Sbjct: 795 cgttgcttcattcttctcagctacaacggaagcaggggttattcaccatggaccagtaca 736 Query: 206 agatccttattactgccaagcatcatcgtccaatgcctcttgatcgtgcctcctcttcat 265 || ||||||||| ||||| |||||||| ||||| |||||||||| | ||||||||||| Sbjct: 735 aggtccttattagtgccacgcatcatcatccaacacctcttgatcacgtctcctcttcat 676 Query: 266 ggaacagggcaggccgaaatgccccagatctccttcgcgtactggtcgatggtgcggtcg 325 ||||||||||| |||||||||||||||||||||||||| || ||||| |||||||||||| Sbjct: 675 ggaacagggcaagccgaaatgccccagatctccttcgcatattggtcaatggtgcggtcg 616 Query: 326 ctgctgaatttgccgcttccagccgtgttcaagatggacatcttgatccatttcttcttg 385 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 615 ctgctgaacttgccacttccagccgtgttcaagatggacatcttgatccatttcttcttg 556 Query: 386 tccttgtaggcttcatcaacccgggcctgtgcctcaatgtagcttgggaagtcatagcca 445 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct: 555 tccttgtaggcttcatcaacccgggcctgtgcatcaatgtagcttgggaagtcatagcca 496 Query: 446 acaaggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagagga 505 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 495 acaaggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagagga 436 Query: 506 gtgtagtcataggtgccgaaagcaccactcctgataaactgcttggcttcttcaaagcgt 565 |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 435 gtgtagtcgtaggtgccgaaagcaccactcctgataaactgcttggcttcttcaaagcgt 376 Query: 566 gggtctggcttgaacaagccattttccctttc 597 |||||||||||||||||||||||||||||||| Sbjct: 375 gggtctggcttgaacaagccattttccctttc 344 Score = 58.0 bits (29), Expect = 3e-05 Identities = 59/65 (90%), Gaps = 3/65 (4%) Strand = Plus / Minus Query: 1 ttttattgggaacctggatgattccgcc-ttcc-gttccggat-aaaatagtacggttac 57 |||||||| ||||||||||||||||||| |||| |||| |||| ||||||||| |||||| Sbjct: 947 ttttattgagaacctggatgattccgccattccggttcaggatcaaaatagtatggttac 888 Query: 58 agacc 62 ||||| Sbjct: 887 agacc 883
>ref|NM_190632.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2526 Score = 329 bits (166), Expect = 6e-87 Identities = 271/306 (88%) Strand = Plus / Minus Query: 283 aatgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgct 342 ||||||||| || ||||| || ||||| |||| || |||||||||||||||||||| || Sbjct: 2505 aatgccccatatttcctttgcatactgagcgatagtacggtcgctgctgaatttgccact 2446 Query: 343 tccagccgtgttcaagatggacatcttgatccatttcttcttgtccttgtaggcttcatc 402 |||||| ||||||| || ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 2445 tccagctgtgttcagtatagacatcttgatccattttttcttatccttgtaggcttcatc 2386 Query: 403 aacccgggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcacc 462 |||| |||||||||| ||||| ||||||||||| ||||||||||| ||||| || ||||| Sbjct: 2385 aacctgggcctgtgcatcaatatagcttgggaaatcatagccaacgaggaaataatcacc 2326 Query: 463 acgcccaaatccagtgttcccttcaagggaatccaagagaggagtgtagtcataggtgcc 522 ||| |||||||||| || |||||||| ||||||||||| |||| |||||||||||||| Sbjct: 2325 acgaccaaatccagaatttccttcaagagaatccaagaggggagcatagtcataggtgcc 2266 Query: 523 gaaagcaccactcctgataaactgcttggcttcttcaaagcgtgggtctggcttgaacaa 582 |||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||| Sbjct: 2265 aaaagcaccactccttataagctgcttggcttcttcaaaacgtgggtctggtttgaacaa 2206 Query: 583 gccatt 588 |||||| Sbjct: 2205 gccatt 2200
>dbj|AK105410.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-123-F09, full insert sequence Length = 2918 Score = 329 bits (166), Expect = 6e-87 Identities = 271/306 (88%) Strand = Plus / Minus Query: 283 aatgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgct 342 ||||||||| || ||||| || ||||| |||| || |||||||||||||||||||| || Sbjct: 2618 aatgccccatatttcctttgcatactgagcgatagtacggtcgctgctgaatttgccact 2559 Query: 343 tccagccgtgttcaagatggacatcttgatccatttcttcttgtccttgtaggcttcatc 402 |||||| ||||||| || ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 2558 tccagctgtgttcagtatagacatcttgatccattttttcttatccttgtaggcttcatc 2499 Query: 403 aacccgggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcacc 462 |||| |||||||||| ||||| ||||||||||| ||||||||||| ||||| || ||||| Sbjct: 2498 aacctgggcctgtgcatcaatatagcttgggaaatcatagccaacgaggaaataatcacc 2439 Query: 463 acgcccaaatccagtgttcccttcaagggaatccaagagaggagtgtagtcataggtgcc 522 ||| |||||||||| || |||||||| ||||||||||| |||| |||||||||||||| Sbjct: 2438 acgaccaaatccagaatttccttcaagagaatccaagaggggagcatagtcataggtgcc 2379 Query: 523 gaaagcaccactcctgataaactgcttggcttcttcaaagcgtgggtctggcttgaacaa 582 |||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||| Sbjct: 2378 aaaagcaccactccttataagctgcttggcttcttcaaaacgtgggtctggtttgaacaa 2319 Query: 583 gccatt 588 |||||| Sbjct: 2318 gccatt 2313 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 168 tacaacggaagcaggggttattcaccgtggatc 200 ||||||||||||| | ||||||||||||||||| Sbjct: 2742 tacaacggaagcaagtgttattcaccgtggatc 2710
>dbj|AK103367.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033126P09, full insert sequence Length = 2920 Score = 329 bits (166), Expect = 6e-87 Identities = 271/306 (88%) Strand = Plus / Minus Query: 283 aatgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgct 342 ||||||||| || ||||| || ||||| |||| || |||||||||||||||||||| || Sbjct: 2620 aatgccccatatttcctttgcatactgagcgatagtacggtcgctgctgaatttgccact 2561 Query: 343 tccagccgtgttcaagatggacatcttgatccatttcttcttgtccttgtaggcttcatc 402 |||||| ||||||| || ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 2560 tccagctgtgttcagtatagacatcttgatccattttttcttatccttgtaggcttcatc 2501 Query: 403 aacccgggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcacc 462 |||| |||||||||| ||||| ||||||||||| ||||||||||| ||||| || ||||| Sbjct: 2500 aacctgggcctgtgcatcaatatagcttgggaaatcatagccaacgaggaaataatcacc 2441 Query: 463 acgcccaaatccagtgttcccttcaagggaatccaagagaggagtgtagtcataggtgcc 522 ||| |||||||||| || |||||||| ||||||||||| |||| |||||||||||||| Sbjct: 2440 acgaccaaatccagaatttccttcaagagaatccaagaggggagcatagtcataggtgcc 2381 Query: 523 gaaagcaccactcctgataaactgcttggcttcttcaaagcgtgggtctggcttgaacaa 582 |||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||| Sbjct: 2380 aaaagcaccactccttataagctgcttggcttcttcaaaacgtgggtctggtttgaacaa 2321 Query: 583 gccatt 588 |||||| Sbjct: 2320 gccatt 2315 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 168 tacaacggaagcaggggttattcaccgtggatc 200 ||||||||||||| | ||||||||||||||||| Sbjct: 2744 tacaacggaagcaagtgttattcaccgtggatc 2712
>gb|BT009168.1| Triticum aestivum clone wl1n.pk0097.g1:fis, full insert mRNA sequence Length = 1070 Score = 325 bits (164), Expect = 1e-85 Identities = 269/304 (88%) Strand = Plus / Minus Query: 288 cccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgcttccag 347 |||| |||||||| || |||||| ||||||| || ||||| ||||||||||| || |||| Sbjct: 773 cccatatctccttggcatactgggcgatggtccgatcgctactgaatttgccactcccag 714 Query: 348 ccgtgttcaagatggacatcttgatccatttcttcttgtccttgtaggcttcatcaaccc 407 | ||||||||||||||||||||| |||| |||||||| |||||||||||| |||| |||| Sbjct: 713 ctgtgttcaagatggacatcttggtccacttcttcttatccttgtaggctgcatccaccc 654 Query: 408 gggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgcc 467 | ||||||| || |||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 653 gatcctgtgcatcgatgtagcttgggaagtcatagccaacaaggaaataatcaccacgcc 594 Query: 468 caaatccagtgttcccttcaagggaatccaagagaggagtgtagtcataggtgccgaaag 527 ||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||| Sbjct: 593 caaatccagaattcccttcaagggaatccaagagaggttcatagtcatagctgccaaaag 534 Query: 528 caccactcctgataaactgcttggcttcttcaaagcgtgggtctggcttgaacaagccat 587 | |||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||| Sbjct: 533 cgccactccttataaactgcttggcttcttcaaaacgtgggtctggtttgaacagaccat 474 Query: 588 tttc 591 |||| Sbjct: 473 tttc 470
>gb|AY108242.1| Zea mays PCO093963 mRNA sequence Length = 1339 Score = 325 bits (164), Expect = 1e-85 Identities = 269/304 (88%) Strand = Plus / Minus Query: 288 cccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgcttccag 347 |||| |||||||| || |||||| ||||||| || ||||| ||||||||||| || |||| Sbjct: 1056 cccatatctccttggcatactgggcgatggtccgatcgctactgaatttgccactcccag 997 Query: 348 ccgtgttcaagatggacatcttgatccatttcttcttgtccttgtaggcttcatcaaccc 407 | ||||||||||||||||||||| |||| |||||||| |||||||||||| |||| |||| Sbjct: 996 ctgtgttcaagatggacatcttggtccacttcttcttatccttgtaggctgcatccaccc 937 Query: 408 gggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgcc 467 | ||||||| || |||||||||||||||||||||||||||||||| || |||||||||| Sbjct: 936 gatcctgtgcatcgatgtagcttgggaagtcatagccaacaaggaaataatcaccacgcc 877 Query: 468 caaatccagtgttcccttcaagggaatccaagagaggagtgtagtcataggtgccgaaag 527 ||||||||| |||||||||||||||||||||||||| ||||||||| |||| |||| Sbjct: 876 caaatccagaattcccttcaagggaatccaagagaggttcatagtcatagatgccaaaag 817 Query: 528 caccactcctgataaactgcttggcttcttcaaagcgtgggtctggcttgaacaagccat 587 | |||||||| ||||||||||||||||||||||| ||||||||||| ||||||| |||| Sbjct: 816 cgccactccttataaactgcttggcttcttcaaaacgtgggtctggtttgaacagaccat 757 Query: 588 tttc 591 |||| Sbjct: 756 tttc 753
>gb|AF326977.1|AF326977 Oryza sativa alpha 1,4-glucan phosphorylase H isozyme mRNA, partial cds Length = 2739 Score = 321 bits (162), Expect = 1e-84 Identities = 270/306 (88%) Strand = Plus / Minus Query: 283 aatgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgct 342 ||||||||| || ||||| || ||||| |||| || |||||||||||||||||||| || Sbjct: 2409 aatgccccatatttcctttgcatactgagcgatagtacggtcgctgctgaatttgccact 2350 Query: 343 tccagccgtgttcaagatggacatcttgatccatttcttcttgtccttgtaggcttcatc 402 |||||| ||||||| || ||||||||||||||||| ||||| ||||||||||||||||| Sbjct: 2349 tccagctgtgttcagtatagacatcttgatccattttttcttatccttgtaggcttcatc 2290 Query: 403 aacccgggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcacc 462 |||| |||||||||| ||||| ||||||||||| |||||||| || ||||| || ||||| Sbjct: 2289 aacctgggcctgtgcatcaatatagcttgggaaatcatagcccacgaggaaataatcacc 2230 Query: 463 acgcccaaatccagtgttcccttcaagggaatccaagagaggagtgtagtcataggtgcc 522 ||| |||||||||| || |||||||| ||||||||||| |||| |||||||||||||| Sbjct: 2229 acgaccaaatccagaatttccttcaagagaatccaagaggggagcatagtcataggtgcc 2170 Query: 523 gaaagcaccactcctgataaactgcttggcttcttcaaagcgtgggtctggcttgaacaa 582 |||||||||||||| |||| |||||||||||||||||| ||||||||||| |||||||| Sbjct: 2169 aaaagcaccactccttataagctgcttggcttcttcaaaacgtgggtctggtttgaacaa 2110 Query: 583 gccatt 588 |||||| Sbjct: 2109 gccatt 2104 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Minus Query: 168 tacaacggaagcaggggttattcaccgtggatc 200 ||||||||||||| | ||||||||||||||||| Sbjct: 2533 tacaacggaagcaagtgttattcaccgtggatc 2501
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 224 bits (113), Expect = 3e-55 Identities = 173/193 (89%) Strand = Plus / Plus Query: 388 cttgtaggcttcatcaacccgggcctgtgcctcaatgtagcttgggaagtcatagccaac 447 ||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 36664352 cttgtaggcttcatcaacctgggcctgtgcatcaatatagcttgggaaatcatagccaac 36664411 Query: 448 aaggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagaggagt 507 ||||| || |||||||| |||||||||| || |||||||| ||||||||||| |||| Sbjct: 36664412 gaggaaataatcaccacgaccaaatccagaatttccttcaagagaatccaagaggggagc 36664471 Query: 508 gtagtcataggtgccgaaagcaccactcctgataaactgcttggcttcttcaaagcgtgg 567 |||||||||||||| |||||||||||||| |||| |||||||||||||||||| ||||| Sbjct: 36664472 atagtcataggtgccaaaagcaccactccttataagctgcttggcttcttcaaaacgtgg 36664531 Query: 568 gtctggcttgaac 580 |||||| |||||| Sbjct: 36664532 gtctggtttgaac 36664544 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 283 aatgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgct 342 ||||||||| || ||||| || ||||| |||| || |||||||||||||||||||| || Sbjct: 36663880 aatgccccatatttcctttgcatactgagcgatagtacggtcgctgctgaatttgccact 36663939 Query: 343 tccagccgtgttcaagatggacatcttgatccatttcttctt 384 |||||| ||||||| || ||||||||||||||||| ||||| Sbjct: 36663940 tccagctgtgttcagtatagacatcttgatccattttttctt 36663981 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 168 tacaacggaagcaggggttattcaccgtggatc 200 ||||||||||||| | ||||||||||||||||| Sbjct: 36663756 tacaacggaagcaagtgttattcaccgtggatc 36663788
>dbj|AP004072.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0529H11 Length = 165969 Score = 224 bits (113), Expect = 3e-55 Identities = 173/193 (89%) Strand = Plus / Plus Query: 388 cttgtaggcttcatcaacccgggcctgtgcctcaatgtagcttgggaagtcatagccaac 447 ||||||||||||||||||| |||||||||| ||||| ||||||||||| ||||||||||| Sbjct: 137618 cttgtaggcttcatcaacctgggcctgtgcatcaatatagcttgggaaatcatagccaac 137677 Query: 448 aaggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatccaagagaggagt 507 ||||| || |||||||| |||||||||| || |||||||| ||||||||||| |||| Sbjct: 137678 gaggaaataatcaccacgaccaaatccagaatttccttcaagagaatccaagaggggagc 137737 Query: 508 gtagtcataggtgccgaaagcaccactcctgataaactgcttggcttcttcaaagcgtgg 567 |||||||||||||| |||||||||||||| |||| |||||||||||||||||| ||||| Sbjct: 137738 atagtcataggtgccaaaagcaccactccttataagctgcttggcttcttcaaaacgtgg 137797 Query: 568 gtctggcttgaac 580 |||||| |||||| Sbjct: 137798 gtctggtttgaac 137810 Score = 91.7 bits (46), Expect = 2e-15 Identities = 88/102 (86%) Strand = Plus / Plus Query: 283 aatgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgccgct 342 ||||||||| || ||||| || ||||| |||| || |||||||||||||||||||| || Sbjct: 137146 aatgccccatatttcctttgcatactgagcgatagtacggtcgctgctgaatttgccact 137205 Query: 343 tccagccgtgttcaagatggacatcttgatccatttcttctt 384 |||||| ||||||| || ||||||||||||||||| ||||| Sbjct: 137206 tccagctgtgttcagtatagacatcttgatccattttttctt 137247 Score = 50.1 bits (25), Expect = 0.008 Identities = 31/33 (93%) Strand = Plus / Plus Query: 168 tacaacggaagcaggggttattcaccgtggatc 200 ||||||||||||| | ||||||||||||||||| Sbjct: 137022 tacaacggaagcaagtgttattcaccgtggatc 137054
>gb|AY098895.1| Citrus hybrid cultivar starch phosphorylase type H mRNA, complete cds Length = 2884 Score = 97.6 bits (49), Expect = 4e-17 Identities = 223/281 (79%) Strand = Plus / Minus Query: 317 gtgcggtcgctgctgaatttgccgcttccagccgtgttcaagatggacatcttgatccat 376 ||||| || ||||||||||| || || ||||| || | || || |||||||| | ||| Sbjct: 2515 gtgcgatcactgctgaatttcccactgccagctgtacttaatatagacatcttcagccac 2456 Query: 377 ttcttcttgtccttgtaggcttcatcaacccgggcctgtgcctcaatgtagcttgggaag 436 |||||| ||||||||| |||| ||||| | | |||| ||||| | ||| ||||||||| Sbjct: 2455 ttcttccggtccttgtaagcttggtcaactctgtcctgagcctctaagtaacttgggaag 2396 Query: 437 tcatagccaacaaggaagtagtcaccacgcccaaatccagtgttcccttcaagggaatcc 496 ||||| ||||| || || || |||||||| ||| | ||||||||||| || |||||||| Sbjct: 2395 tcataaccaactagaaaataatcaccacgaccataaccagtgttcccctccagggaatca 2336 Query: 497 aagagaggagtgtagtcataggtgccgaaagcaccactcctgataaactgcttggcttct 556 | || || ||||||||||| | || || || ||||| || ||||| |||||||| ||| Sbjct: 2335 agaagcgggttgtagtcatagcttccaaatgctccacttcttataaattgcttggcctct 2276 Query: 557 tcaaagcgtgggtctggcttgaacaagccattttccctttc 597 ||||| || || ||||| |||||||| |||| ||| ||||| Sbjct: 2275 tcaaaccgaggatctggtttgaacaatccatcttctctttc 2235
>gb|M69038.1|POTAGPTHI Potato alpha-glucan phosphorylase type H isozyme mRNA, complete cds Length = 2655 Score = 73.8 bits (37), Expect = 6e-10 Identities = 103/125 (82%) Strand = Plus / Minus Query: 362 gacatcttgatccatttcttcttgtccttgtaggcttcatcaacccgggcctgtgcctca 421 |||||||| |||||| | ||| |||||||||| ||||||||||||| ||||| || || Sbjct: 2428 gacatctttatccatcttttcctgtccttgtaagcttcatcaacccttgcctgagcatcc 2369 Query: 422 atgtagcttgggaagtcatagccaacaaggaagtagtcaccacgcccaaatccagtgttc 481 |||||||| || || |||| |||||||| || ||||| ||||| ||| |||| | |||| Sbjct: 2368 atgtagctcggaaaatcatgaccaacaagaaaatagtctccacgaccatatcccgagttc 2309 Query: 482 ccttc 486 ||||| Sbjct: 2308 ccttc 2304
>ref|NM_114564.2| Arabidopsis thaliana ATPHS2; phosphorylase/ transferase, transferring glycosyl groups AT3G46970 (ATPHS2) mRNA, complete cds Length = 2981 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 409 ggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgccc 468 |||||| || || |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct: 2603 ggcctgagcgtccatgtagctggggaagtcatacccaaccaggaagtaatcaccacgtcc 2544 Query: 469 aaatccagtgttcccttcaagggaatc 495 ||| || ||||| || ||||| ||||| Sbjct: 2543 aaaacctgtgttaccctcaagagaatc 2517
>emb|AL133292.3|ATF13I12 Arabidopsis thaliana DNA chromosome 3, BAC clone F13I12 Length = 140680 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Plus Query: 409 ggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgccc 468 |||||| || || |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct: 19319 ggcctgagcgtccatgtagctggggaagtcatacccaaccaggaagtaatcaccacgtcc 19378 Query: 469 aaatccagtgttcccttcaagggaatc 495 ||| || ||||| || ||||| ||||| Sbjct: 19379 aaaacctgtgttaccctcaagagaatc 19405
>gb|AY090236.1| Arabidopsis thaliana AT3g46970/F13I12_20 mRNA, complete cds Length = 2887 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 409 ggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgccc 468 |||||| || || |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct: 2511 ggcctgagcgtccatgtagctggggaagtcatacccaaccaggaagtaatcaccacgtcc 2452 Query: 469 aaatccagtgttcccttcaagggaatc 495 ||| || ||||| || ||||| ||||| Sbjct: 2451 aaaacctgtgttaccctcaagagaatc 2425
>gb|AY056807.1| Arabidopsis thaliana AT3g46970/F13I12_20 mRNA, complete cds Length = 2981 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 409 ggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgccc 468 |||||| || || |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct: 2603 ggcctgagcgtccatgtagctggggaagtcatacccaaccaggaagtaatcaccacgtcc 2544 Query: 469 aaatccagtgttcccttcaagggaatc 495 ||| || ||||| || ||||| ||||| Sbjct: 2543 aaaacctgtgttaccctcaagagaatc 2517
>emb|BX826198.1|CNS0A6HG Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTSIL90ZE06 of Silique of strain col-0 of Arabidopsis thaliana (thale cress) Length = 705 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 409 ggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgccc 468 |||||| || || |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct: 329 ggcctgagcgtccatgtagctggggaagtcatacccaaccaggaagtaatcaccacgtcc 270 Query: 469 aaatccagtgttcccttcaagggaatc 495 ||| || ||||| || ||||| ||||| Sbjct: 269 aaaacctgtgttaccctcaagagaatc 243
>gb|BT003012.1| Arabidopsis thaliana At3g46970/F13I12_20 gene, complete cds Length = 2526 Score = 69.9 bits (35), Expect = 9e-09 Identities = 74/87 (85%) Strand = Plus / Minus Query: 409 ggcctgtgcctcaatgtagcttgggaagtcatagccaacaaggaagtagtcaccacgccc 468 |||||| || || |||||||| ||||||||||| ||||| |||||||| |||||||| || Sbjct: 2379 ggcctgagcgtccatgtagctggggaagtcatacccaaccaggaagtaatcaccacgtcc 2320 Query: 469 aaatccagtgttcccttcaagggaatc 495 ||| || ||||| || ||||| ||||| Sbjct: 2319 aaaacctgtgttaccctcaagagaatc 2293
>gb|AY570719.1| Ostreococcus tauri PHOIII (pho3) gene, partial cds Length = 1048 Score = 61.9 bits (31), Expect = 2e-06 Identities = 34/35 (97%) Strand = Plus / Minus Query: 284 atgccccagatctccttcgcgtactggtcgatggt 318 |||||||||||||||||||||||||| |||||||| Sbjct: 906 atgccccagatctccttcgcgtactgatcgatggt 872
>emb|Z35117.1|VFALGLPHO Vicia faba var. minor mRNA for alpha 1,4-glucan phosphorylase type H, (VfPho2 gene) Length = 2910 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 422 atgtagcttgggaagtcatagccaacaaggaagta 456 |||||||||||||||||||| |||||||| ||||| Sbjct: 2523 atgtagcttgggaagtcataaccaacaagaaagta 2489
>emb|X04265.1|OCPHOR Rabbit mRNA for muscle glycogen phosphorylase (EC.2.4.1.1) Length = 2831 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 287 ccccagatctccttcgcgtactggtcgatggtgcggtcgctg 328 |||||||||||| |||||||||| | ||||||||||||||| Sbjct: 2554 ccccagatctcccgcgcgtactgggcaatggtgcggtcgctg 2513
>dbj|D00040.1|RABPYGM Oryctolagus cuniculus mRNA for glycogen phosphorylase, complete cds Length = 2831 Score = 52.0 bits (26), Expect = 0.002 Identities = 38/42 (90%) Strand = Plus / Minus Query: 287 ccccagatctccttcgcgtactggtcgatggtgcggtcgctg 328 |||||||||||| |||||||||| | ||||||||||||||| Sbjct: 2554 ccccagatctcccgcgcgtactgggcaatggtgcggtcgctg 2513
>gb|BC114109.1| Bos taurus cDNA clone IMAGE:8175920, containing frame-shift errors Length = 2910 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 286 gccccagatctccttcgcgtactggtcgatggtgcggtc 324 ||||||||||||| | ||||||||| | ||||||||||| Sbjct: 2552 gccccagatctccctggcgtactgggcaatggtgcggtc 2514
>gb|S82859.1| alpha-1,4-glucan orthophosphate glycosyl transferase [cattle, skeletal muscle, mRNA, 2854 nt] Length = 2854 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 286 gccccagatctccttcgcgtactggtcgatggtgcggtc 324 ||||||||||||| | ||||||||| | ||||||||||| Sbjct: 2519 gccccagatctccctggcgtactgggcaatggtgcggtc 2481
>gb|AF001899.1|AF001899 Ovis aries glycogen myophosphorylase mRNA, complete cds Length = 2869 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 286 gccccagatctccttcgcgtactggtcgatggtgcggtc 324 ||||||||||||| | ||||||||| | ||||||||||| Sbjct: 2551 gccccagatctccctggcgtactgggcaatggtgcggtc 2513
>ref|NM_001009192.1| Ovis aries muscle glycogen phosphorylase (PYGM), mRNA Length = 2869 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 286 gccccagatctccttcgcgtactggtcgatggtgcggtc 324 ||||||||||||| | ||||||||| | ||||||||||| Sbjct: 2551 gccccagatctccctggcgtactgggcaatggtgcggtc 2513
>ref|NM_175786.2| Bos taurus phosphorylase, glycogen; muscle (McArdle syndrome, glycogen storage disease type V) (PYGM), mRNA Length = 2854 Score = 46.1 bits (23), Expect = 0.13 Identities = 35/39 (89%) Strand = Plus / Minus Query: 286 gccccagatctccttcgcgtactggtcgatggtgcggtc 324 ||||||||||||| | ||||||||| | ||||||||||| Sbjct: 2519 gccccagatctccctggcgtactgggcaatggtgcggtc 2481
>emb|X03030.1|OCPHOSR1 Rabbit mRNA 3'-fragment for glycogen phosphorylase (aa 572-841) Length = 1028 Score = 44.1 bits (22), Expect = 0.52 Identities = 34/38 (89%) Strand = Plus / Minus Query: 287 ccccagatctccttcgcgtactggtcgatggtgcggtc 324 |||||||||||| |||||||||| | ||||||||||| Sbjct: 760 ccccagatctcccgcgcgtactgggcaatggtgcggtc 723
>emb|AL583923.1|MLEPRTN7 Mycobacterium leprae strain TN complete genome; segment 7/10 Length = 348950 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 ctggtcgatggtgcggtcgctg 328 |||||||||||||||||||||| Sbjct: 344598 ctggtcgatggtgcggtcgctg 344577
>emb|AL049491.1|MLCB1222 Mycobacterium leprae cosmid B1222 Length = 34714 Score = 44.1 bits (22), Expect = 0.52 Identities = 22/22 (100%) Strand = Plus / Minus Query: 307 ctggtcgatggtgcggtcgctg 328 |||||||||||||||||||||| Sbjct: 24987 ctggtcgatggtgcggtcgctg 24966
>emb|X73684.1|STSTP1 S.tuberosum mRNA for leaf type L starch phosphorylase Length = 3171 Score = 42.1 bits (21), Expect = 2.1 Identities = 36/41 (87%) Strand = Plus / Minus Query: 343 tccagccgtgttcaagatggacatcttgatccatttcttct 383 |||||| ||||| ||||| ||||| ||| |||||||||||| Sbjct: 2930 tccagctgtgtttaagatcgacattttggtccatttcttct 2890
>ref|NM_102884.1| Arabidopsis thaliana aspartic-type endopeptidase/ pepsin A AT1G31450 mRNA, complete cds Length = 1338 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 aagtcatagccaacaaggaa 453 |||||||||||||||||||| Sbjct: 1286 aagtcatagccaacaaggaa 1267
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 346 agccgtgttcaagatggacatctt 369 |||||||||||||||| ||||||| Sbjct: 3732061 agccgtgttcaagatgaacatctt 3732038
>gb|BC055181.1| Danio rerio zgc:63642, mRNA (cDNA clone MGC:63642 IMAGE:5605037), complete cds Length = 1740 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 284 atgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgcc 339 |||||||||||||| |||||||| |||||||||||||||| ||||||||| Sbjct: 1061 atgccccagatctcacgggcgtactgactgatggtgcggtcgctggagaatttgcc 1006
>gb|DQ372710.1| Acidovorax sp. MUL2G8 transcriptional regulator gene, partial cds; beta-lactamase fold protein and putative integrase/recombinase genes, complete cds; class 1 integron, complete sequence; and hypothetical protein and TnpA transposase genes, complete cds Length = 6002 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 gccgaaagcaccactcctga 539 |||||||||||||||||||| Sbjct: 1983 gccgaaagcaccactcctga 2002
>emb|AL365230.8| Human DNA sequence from clone RP11-384G23 on chromosome 13, complete sequence Length = 99257 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 102 gcacttcaaaagtgcagcag 121 |||||||||||||||||||| Sbjct: 63906 gcacttcaaaagtgcagcag 63925
>emb|AL928799.13| Zebrafish DNA sequence from clone CH211-15B10 in linkage group 7, complete sequence Length = 89993 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Plus Query: 284 atgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgcc 339 |||||||||||||| |||||||| |||||||||||||||| ||||||||| Sbjct: 24095 atgccccagatctcacgggcgtactgactgatggtgcggtcgctggagaatttgcc 24150
>emb|BX640447.1| Bordetella bronchiseptica strain RB50, complete genome; segment 11/16 Length = 349442 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 232 cgtccaatgcctcttgatcgtgcc 255 |||||||||| ||||||||||||| Sbjct: 266161 cgtccaatgcttcttgatcgtgcc 266184
>emb|BX640443.1| Bordetella bronchiseptica strain RB50, complete genome; segment 7/16 Length = 346274 Score = 40.1 bits (20), Expect = 8.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 232 cgtccaatgcctcttgatcgtgcc 255 |||||||||| ||||||||||||| Sbjct: 262635 cgtccaatgcttcttgatcgtgcc 262612
>emb|AL939132.1|SCO939132 Streptomyces coelicolor A3(2) complete genome; segment 29/29 Length = 302007 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 293 atctccttcgcgtactggtc 312 |||||||||||||||||||| Sbjct: 200089 atctccttcgcgtactggtc 200070
>ref|NM_200472.1| Danio rerio zgc:63642 (zgc:63642), mRNA Length = 1740 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 284 atgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgcc 339 |||||||||||||| |||||||| |||||||||||||||| ||||||||| Sbjct: 1061 atgccccagatctcacgggcgtactgactgatggtgcggtcgctggagaatttgcc 1006
>gb|DQ056472.1| Arabidopsis thaliana aspartyl protease family protein (At1g31450) mRNA, complete cds Length = 1338 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 434 aagtcatagccaacaaggaa 453 |||||||||||||||||||| Sbjct: 1286 aagtcatagccaacaaggaa 1267
>ref|XM_694373.1| PREDICTED: Danio rerio similar to Glycogen phosphorylase, muscle form (Myophosphorylase) (LOC570850), mRNA Length = 1842 Score = 40.1 bits (20), Expect = 8.1 Identities = 47/56 (83%) Strand = Plus / Minus Query: 284 atgccccagatctccttcgcgtactggtcgatggtgcggtcgctgctgaatttgcc 339 |||||||||||||| |||||||| |||||||||||||||| ||||||||| Sbjct: 1328 atgccccagatctcacgggcgtactgactgatggtgcggtcgctggagaatttgcc 1273
>gb|AC027135.6|AC027135 Arabidopsis thaliana chromosome 1 BAC T8E3 genomic sequence, complete sequence Length = 80139 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 434 aagtcatagccaacaaggaa 453 |||||||||||||||||||| Sbjct: 22520 aagtcatagccaacaaggaa 22539
>emb|AJ011862.1|CRO011862 Catharanthus roseus mRNA for flavonoid 3',5'-hydroxylase Length = 1595 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 367 cttgatccatttcttcttgt 386 |||||||||||||||||||| Sbjct: 1069 cttgatccatttcttcttgt 1050
>dbj|AP002906.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1589B1 Length = 162728 Score = 40.1 bits (20), Expect = 8.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 152 cttcattcttctcagctaca 171 |||||||||||||||||||| Sbjct: 19716 cttcattcttctcagctaca 19697 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,596,147 Number of Sequences: 3902068 Number of extensions: 4596147 Number of successful extensions: 78672 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 43 Number of HSP's successfully gapped in prelim test: 4 Number of HSP's that attempted gapping in prelim test: 78562 Number of HSP's gapped (non-prelim): 100 length of query: 597 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 574 effective length of database: 17,143,297,704 effective search space: 9840252882096 effective search space used: 9840252882096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
