ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4m12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit) 811 0.0
2dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 305 7e-80
3gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 305 7e-80
4emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa... 305 7e-80
5dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRN... 305 7e-80
6dbj|AK072527.1| Oryza sativa (japonica cultivar-group) cDNA clon... 297 2e-77
7gb|AY104910.1| Zea mays PCO110806 mRNA sequence 198 1e-47
8gb|AY072781.1| Helianthus annuus cytochrome c oxidase subunit 5c... 66 1e-07
9ref|NM_180908.1| Arabidopsis thaliana cytochrome-c oxidase AT5G6... 64 5e-07
10ref|NM_125524.2| Arabidopsis thaliana cytochrome-c oxidase AT5G6... 64 5e-07
11ref|NM_001037041.1| Arabidopsis thaliana cytochrome-c oxidase AT... 64 5e-07
12gb|BT024521.1| Arabidopsis thaliana At5g61310 mRNA, complete cds 64 5e-07
13gb|AY088342.1| Arabidopsis thaliana clone 5810 mRNA, complete se... 64 5e-07
14dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 64 5e-07
15emb|BX842047.1|CNS09Y9S Arabidopsis thaliana Full-length cDNA Co... 54 4e-04
16ref|NM_180142.1| Arabidopsis thaliana unknown protein AT2G47390 ... 52 0.002
17ref|NM_130306.2| Arabidopsis thaliana cytochrome-c oxidase AT2G4... 52 0.002
18gb|AY072780.1| Helianthus annuus cytochrome c oxidase subunit 5c... 52 0.002
19gb|AC002337.3| Arabidopsis thaliana chromosome 2 clone T8I13 map... 52 0.002
20gb|AY093734.1| Arabidopsis thaliana At2g47380/T8I13.22 mRNA, com... 52 0.002
21gb|AY070752.1| Arabidopsis thaliana At2g47380/T8I13.22 mRNA, com... 52 0.002
22emb|BX820449.1|CNS0A8OO Arabidopsis thaliana Full-length cDNA Co... 52 0.002
23emb|BX821087.1|CNS0A85I Arabidopsis thaliana Full-length cDNA Co... 52 0.002
24ref|NM_116105.2| Arabidopsis thaliana unknown protein AT3G62400 ... 50 0.007
25ref|NM_180407.2| Arabidopsis thaliana unknown protein AT3G62400 ... 50 0.007
26gb|AC151956.5| Medicago truncatula clone mth2-52p17, complete se... 50 0.007
27emb|BX821474.1|CNS0A87N Arabidopsis thaliana Full-length cDNA Co... 50 0.007
28emb|BX821469.1|CNS0A86G Arabidopsis thaliana Full-length cDNA Co... 50 0.007
29emb|BX826120.1|CNS0A7IC Arabidopsis thaliana Full-length cDNA Co... 50 0.007
30emb|BX825286.1|CNS0A7K2 Arabidopsis thaliana Full-length cDNA Co... 50 0.007
31emb|BX841637.1|CNS09YIY Arabidopsis thaliana Full-length cDNA Co... 50 0.007
32gb|BT004284.1| Arabidopsis thaliana clone RAFL15-37-F21 (R50133)... 50 0.007
33gb|AY088996.1| Arabidopsis thaliana clone 14169 mRNA, complete s... 50 0.007
34emb|AL162507.1|ATT12C14 Arabidopsis thaliana DNA chromosome 3, B... 50 0.007
35gb|S73602.1| cytochrome c oxidase subunit Vc [Ipomoea batatas=sw... 48 0.027
36emb|X53393.1|IBCYXVC Sweet potato mRNA for cytochrome c oxidase ... 48 0.027
37dbj|AK207360.1| Mus musculus cDNA, clone:Y2G0107M06, strand:minu... 44 0.42
38dbj|AK195260.1| Mus musculus cDNA, clone:Y1G0117O10, strand:minu... 44 0.42
39dbj|AK191697.1| Mus musculus cDNA, clone:Y1G0106K24, strand:minu... 44 0.42
40gb|AC118200.8| Mus musculus chromosome 5, clone RP23-330E5, comp... 42 1.7
41gb|DQ491003.1| Chlorella virus AR158 ctg_1047243734156 genomic s... 42 1.7
42gb|DQ491002.1| Paramecium bursaria Chlorella virus NY2A Chlorell... 42 1.7
43ref|XM_312587.2| Anopheles gambiae str. PEST ENSANGP00000001263 ... 42 1.7
44dbj|AP006137.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.7
45ref|XM_481337.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
46ref|XM_469168.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
47ref|XM_469167.1| Oryza sativa (japonica cultivar-group), mRNA 40 6.6
48gb|BC073206.1| Xenopus laevis MGC80481 protein, mRNA (cDNA clone... 40 6.6
49gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 40 6.6
50gb|AY495597.1| Gibberella moniliformis polyketide synthase (PKS7... 40 6.6
51gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genom... 40 6.6
52emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 ... 40 6.6
53gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b0... 40 6.6
54gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
55emb|BX908784.6| Zebrafish DNA sequence from clone DKEY-69I13, co... 40 6.6
56emb|AL954693.5| Zebrafish DNA sequence from clone BUSM1-146N9 in... 40 6.6
57emb|BX957247.4| Zebrafish DNA sequence from clone DKEYP-117H10 i... 40 6.6
58emb|BX537335.12| Zebrafish DNA sequence from clone DKEYP-84G9 in... 40 6.6
59gb|AC154697.2| Mus musculus BAC clone RP23-136A22 from chromosom... 40 6.6
60emb|BX544881.7| Zebrafish DNA sequence from clone DKEY-64F15 in ... 40 6.6
61gb|S76743.1| cop-2=cruxrhodopsin-2 [Haloarcula, arg-2, Andes hei... 40 6.6
62emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 i... 40 6.6
63dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
64dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
65dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
66dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
67dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
68dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
69gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
70gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Ca... 40 6.6
71ref|XM_238398.3| PREDICTED: Rattus norvegicus tyrosinase-related... 40 6.6
72gb|AF003626.2| Homo sapiens chromosome X clone ICRFXc104-M0525, ... 40 6.6
73dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
74dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
75dbj|AP003612.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
76dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome 40 6.6
77dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
78dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
79dbj|AP005255.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
80emb|BX248122.10| Zebrafish DNA sequence from clone CH211-214C20 ... 40 6.6
81emb|BX537115.11| Zebrafish DNA sequence from clone CH211-207B20 ... 40 6.6
82dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
83dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
84dbj|AP005065.3| Oryza sativa (japonica cultivar-group) genomic D... 40 6.6
85dbj|AK111383.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
86dbj|AK073375.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
87dbj|AK063414.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.6
88emb|CT009557.4| Pan troglodytes chromosome X clone PTB-010G23 ma... 40 6.6
89gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 6.6
90emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb... 40 6.6
91emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa... 40 6.6 
>emb|Z68091.1|HVCOXVCMR H.vulgare mRNA for cytochrome c (Vc subunit)
          Length = 481

 Score =  811 bits (409), Expect = 0.0
 Identities = 424/429 (98%)
 Strand = Plus / Minus

                                                                       
Query: 60  tatgacgagaaactaaattcaaaacggttcaatgttctcaaatggtggtgtgcttatttt 119
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 475 tatgacgagaaactaaattcaaaacggttcaatgttctcaaatggtgttgtgcttatttt 416

                                                                       
Query: 120 catgacaatctccacagcaatcactctgtcatgctctccacggagtttcacaaattactg 179
           ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 cattacaatctccacagaaatcactctgtcatgctctccacggagtttcacaaattactg 356

                                                                       
Query: 180 gcaaaaccgaaatggcaaaagacttcgcgatgtagaacttctggttcagcacgtcagaac 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 gcaaaaccgaaatggcaaaagacttcgcgatgtagaacttctggttcagcacgtcagaac 296

                                                                       
Query: 240 tactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcgggtc 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 tactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcgggtc 236

                                                                       
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaagggtg 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 235 ttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaagggtg 176

                                                                       
Query: 360 agtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactctg 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 175 agtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactctg 116

                                                                       
Query: 420 ccgcctgccatctgctagctgttgggctcagatgccaaaatgccttgccgccgccggagg 479
           |||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct: 115 ccgcctgccatctgctagctgttgggctcagatgccaaaatgccttccccccgccggagg 56

                    
Query: 480 agaagaggg 488
           |||||||||
Sbjct: 55  agaagaggg 47
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>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  305 bits (154), Expect = 7e-80
 Identities = 202/218 (92%)
 Strand = Plus / Plus

                                                                            
Query: 238      actactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcggg 297
                |||||||||| || || || |||||||| ||||||||||||||||||||||||||||  |
Sbjct: 23003280 actactcctcgacgacaacactgatctggcccttctcgagcatgtcgtagaaggatctag 23003339

                                                                            
Query: 298      tcttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaaggg 357
                |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 23003340 tcttcctctgctcgttccagtgatgcatcttccacagaccaccagcgaccagcccaaggg 23003399

                                                                            
Query: 358      tgagtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactc 417
                |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 23003400 tgagcccaatgcagatctccttcaccacgctcggccccttgagggtcgcatgtgcaattc 23003459

                                                      
Query: 418      tgccgcctgccatctgctagctgttgggctcagatgcc 455
                |||| |||||||| |||| ||||||| |||||||||||
Sbjct: 23003460 tgccacctgccatttgcttgctgttgagctcagatgcc 23003497



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                            
Query: 116      ttttcatgacaatctccacagcaatcactctgtcatgctctccacggagtttcacaaatt 175
                ||||||||||||||||||| ||| |  || ||||||||||||||  |||||||| |||| 
Sbjct: 23003180 ttttcatgacaatctccacggcactagctttgtcatgctctccagagagtttcagaaata 23003239

                          
Query: 176      actggcaaaa 185
                ||| ||||||
Sbjct: 23003240 acttgcaaaa 23003249



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 22400832 ccgccgccggaggagaagag 22400813



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 12598276 ccgccgccggaggagaagag 12598295
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  305 bits (154), Expect = 7e-80
 Identities = 202/218 (92%)
 Strand = Plus / Plus

                                                                            
Query: 238      actactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcggg 297
                |||||||||| || || || |||||||| ||||||||||||||||||||||||||||  |
Sbjct: 22931471 actactcctcgacgacaacactgatctggcccttctcgagcatgtcgtagaaggatctag 22931530

                                                                            
Query: 298      tcttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaaggg 357
                |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 22931531 tcttcctctgctcgttccagtgatgcatcttccacagaccaccagcgaccagcccaaggg 22931590

                                                                            
Query: 358      tgagtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactc 417
                |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 22931591 tgagcccaatgcagatctccttcaccacgctcggccccttgagggtcgcatgtgcaattc 22931650

                                                      
Query: 418      tgccgcctgccatctgctagctgttgggctcagatgcc 455
                |||| |||||||| |||| ||||||| |||||||||||
Sbjct: 22931651 tgccacctgccatttgcttgctgttgagctcagatgcc 22931688



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                            
Query: 116      ttttcatgacaatctccacagcaatcactctgtcatgctctccacggagtttcacaaatt 175
                ||||||||||||||||||| ||| |  || ||||||||||||||  |||||||| |||| 
Sbjct: 22931371 ttttcatgacaatctccacggcactagctttgtcatgctctccagagagtttcagaaata 22931430

                          
Query: 176      actggcaaaa 185
                ||| ||||||
Sbjct: 22931431 acttgcaaaa 22931440



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 22329177 ccgccgccggaggagaagag 22329158



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 12552550 ccgccgccggaggagaagag 12552569
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>emb|AL935072.4|CNS08CCO Oryza sativa chromosome 12, . BAC OSJNBa0028L05 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 155568

 Score =  305 bits (154), Expect = 7e-80
 Identities = 202/218 (92%)
 Strand = Plus / Plus

                                                                          
Query: 238    actactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcggg 297
              |||||||||| || || || |||||||| ||||||||||||||||||||||||||||  |
Sbjct: 112557 actactcctcgacgacaacactgatctggcccttctcgagcatgtcgtagaaggatctag 112616

                                                                          
Query: 298    tcttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaaggg 357
              |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 112617 tcttcctctgctcgttccagtgatgcatcttccacagaccaccagcgaccagcccaaggg 112676

                                                                          
Query: 358    tgagtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactc 417
              |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 112677 tgagcccaatgcagatctccttcaccacgctcggccccttgagggtcgcatgtgcaattc 112736

                                                    
Query: 418    tgccgcctgccatctgctagctgttgggctcagatgcc 455
              |||| |||||||| |||| ||||||| |||||||||||
Sbjct: 112737 tgccacctgccatttgcttgctgttgagctcagatgcc 112774



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Plus

                                                                          
Query: 116    ttttcatgacaatctccacagcaatcactctgtcatgctctccacggagtttcacaaatt 175
              ||||||||||||||||||| ||| |  || ||||||||||||||  |||||||| |||| 
Sbjct: 112457 ttttcatgacaatctccacggcactagctttgtcatgctctccagagagtttcagaaata 112516

                        
Query: 176    actggcaaaa 185
              ||| ||||||
Sbjct: 112517 acttgcaaaa 112526
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>dbj|AB027123.1| Oryza sativa (japonica cultivar-group) COX5c mRNA for cytochrome c
           oxidase subunit 5c, complete cds
          Length = 533

 Score =  305 bits (154), Expect = 7e-80
 Identities = 202/218 (92%)
 Strand = Plus / Minus

                                                                       
Query: 238 actactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcggg 297
           |||||||||| || || || |||||||| ||||||||||||||||||||||||||||  |
Sbjct: 291 actactcctcgacgacaacactgatctggcccttctcgagcatgtcgtagaaggatctag 232

                                                                       
Query: 298 tcttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaaggg 357
           |||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 231 tcttcctctgctcgttccagtgatgcatcttccacagaccaccagcgaccagcccaaggg 172

                                                                       
Query: 358 tgagtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactc 417
           |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 171 tgagcccaatgcagatctccttcaccacgctcggccccttgagggtcgcatgtgcaattc 112

                                                 
Query: 418 tgccgcctgccatctgctagctgttgggctcagatgcc 455
           |||| |||||||| |||| ||||||| |||||||||||
Sbjct: 111 tgccacctgccatttgcttgctgttgagctcagatgcc 74



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                       
Query: 116 ttttcatgacaatctccacagcaatcactctgtcatgctctccacggagtttcacaaatt 175
           ||||||||||||||||||| ||| |  || ||||||||||||||  |||||||| |||| 
Sbjct: 391 ttttcatgacaatctccacggcactagctttgtcatgctctccagagagtttcagaaata 332

                     
Query: 176 actggcaaaa 185
           ||| ||||||
Sbjct: 331 acttgcaaaa 322
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>dbj|AK072527.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023130G10, full
            insert sequence
          Length = 2803

 Score =  297 bits (150), Expect = 2e-77
 Identities = 201/218 (92%)
 Strand = Plus / Minus

                                                                        
Query: 238  actactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcggg 297
            |||||||||| || || || |||||||| ||||||||||||||||||||||||||||  |
Sbjct: 2601 actactcctcgacgacaacactgatctggcccttctcgagcatgtcgtagaaggatctag 2542

                                                                        
Query: 298  tcttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaaggg 357
            ||||||||||| |||||||||||||||||||||||| ||||||||| |||||||||||||
Sbjct: 2541 tcttcctctgcccgttccagtgatgcatcttccacagaccaccagcgaccagcccaaggg 2482

                                                                        
Query: 358  tgagtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactc 417
            |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 2481 tgagcccaatgcagatctccttcaccacgctcggccccttgagggtcgcatgtgcaattc 2422

                                                  
Query: 418  tgccgcctgccatctgctagctgttgggctcagatgcc 455
            |||| |||||||| |||| ||||||| |||||||||||
Sbjct: 2421 tgccacctgccatttgcttgctgttgagctcagatgcc 2384



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 60/70 (85%)
 Strand = Plus / Minus

                                                                        
Query: 116  ttttcatgacaatctccacagcaatcactctgtcatgctctccacggagtttcacaaatt 175
            ||||||||||||||||||| ||| |  || ||||||||||||||  |||||||| |||| 
Sbjct: 2701 ttttcatgacaatctccacggcactagctttgtcatgctctccagagagtttcagaaata 2642

                      
Query: 176  actggcaaaa 185
            ||| ||||||
Sbjct: 2641 acttgcaaaa 2632
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>gb|AY104910.1| Zea mays PCO110806 mRNA sequence
          Length = 749

 Score =  198 bits (100), Expect = 1e-47
 Identities = 172/196 (87%)
 Strand = Plus / Minus

                                                                       
Query: 240 tactcctcaacaacgacgctgatctgccccttctcgagcatgtcgtagaaggatcgggtc 299
           |||||||| || || ||||||||||| ||||| || |||||||| |||||||| |  |||
Sbjct: 362 tactcctcgacgacaacgctgatctggcccttgtcaagcatgtcatagaaggacctagtc 303

                                                                       
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaagggtg 359
           |||||||||||||||||||| |||||||||||||| || || || | ||| || ||||| 
Sbjct: 302 ttcctctgctcgttccagtggtgcatcttccacatgcctcccgcgatcagacccagggtc 243

                                                                       
Query: 360 agtccaatgaagatctccttcaccacgctcggccccttgagggtcgcatgtgcaactctg 419
           |||||||||||||||||||||||||| ||||| ||||||||||| ||||||||||| |||
Sbjct: 242 agtccaatgaagatctccttcaccacactcgggcccttgagggtggcatgtgcaaccctg 183

                           
Query: 420 ccgcctgccatctgct 435
           ||||||||||| ||||
Sbjct: 182 ccgcctgccatttgct 167



 Score = 46.1 bits (23), Expect = 0.11
 Identities = 61/71 (85%), Gaps = 7/71 (9%)
 Strand = Plus / Minus

                                                                       
Query: 92  tgttctcaaatggtggtgtgcttattttcatgacaa-tctccacagcaa----tcactct 146
           ||||||||||||||  ||||||||||| || ||||| ||||||||||||    ||||| |
Sbjct: 467 tgttctcaaatggt--tgtgcttatttccaggacaaatctccacagcaagcaatcacttt 410

                      
Query: 147 gtcatgctctc 157
           |||||||||||
Sbjct: 409 gtcatgctctc 399
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>gb|AY072781.1| Helianthus annuus cytochrome c oxidase subunit 5c (COX5c-2) mRNA,
           complete cds
          Length = 430

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 39/41 (95%)
 Strand = Plus / Minus

                                                    
Query: 303 ctctgctcgttccagtgatgcatcttccacataccaccagc 343
           ||||||||||||||||| ||||||||||||| |||||||||
Sbjct: 185 ctctgctcgttccagtggtgcatcttccacaaaccaccagc 145
to top
>ref|NM_180908.1| Arabidopsis thaliana cytochrome-c oxidase AT5G61310 transcript
           variant AT5G61310.1 mRNA, complete cds
          Length = 405

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 300 ttcctctgctcgttccagtgatgcatcttcca 331
           ||||||||||||||||||||||||||||||||
Sbjct: 220 ttcctctgctcgttccagtgatgcatcttcca 189
to top
>ref|NM_125524.2| Arabidopsis thaliana cytochrome-c oxidase AT5G61310 transcript
           variant AT5G61310.2 mRNA, complete cds
          Length = 430

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 300 ttcctctgctcgttccagtgatgcatcttcca 331
           ||||||||||||||||||||||||||||||||
Sbjct: 232 ttcctctgctcgttccagtgatgcatcttcca 201
to top
>ref|NM_001037041.1| Arabidopsis thaliana cytochrome-c oxidase AT5G61310 transcript
           variant AT5G61310.3 mRNA, complete cds
          Length = 428

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 300 ttcctctgctcgttccagtgatgcatcttcca 331
           ||||||||||||||||||||||||||||||||
Sbjct: 230 ttcctctgctcgttccagtgatgcatcttcca 199
to top
>gb|BT024521.1| Arabidopsis thaliana At5g61310 mRNA, complete cds
          Length = 195

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 300 ttcctctgctcgttccagtgatgcatcttcca 331
           ||||||||||||||||||||||||||||||||
Sbjct: 131 ttcctctgctcgttccagtgatgcatcttcca 100
to top
>gb|AY088342.1| Arabidopsis thaliana clone 5810 mRNA, complete sequence
          Length = 406

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 300 ttcctctgctcgttccagtgatgcatcttcca 331
           ||||||||||||||||||||||||||||||||
Sbjct: 221 ttcctctgctcgttccagtgatgcatcttcca 190
to top
>dbj|AB010073.1| Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MFB13
          Length = 80376

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Plus

                                             
Query: 300   ttcctctgctcgttccagtgatgcatcttcca 331
             ||||||||||||||||||||||||||||||||
Sbjct: 24165 ttcctctgctcgttccagtgatgcatcttcca 24196
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>emb|BX842047.1|CNS09Y9S Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL10ZF12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 433

 Score = 54.0 bits (27), Expect = 4e-04
 Identities = 63/75 (84%)
 Strand = Plus / Minus

                                                                       
Query: 270 ttctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttc 329
           ||||| |||| ||| ||||| | || ||| |||||||| |||||||| || |||||||||
Sbjct: 183 ttctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttc 124

                          
Query: 330 cacataccaccagca 344
           || | ||||||||||
Sbjct: 123 caaagaccaccagca 109
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>ref|NM_180142.1| Arabidopsis thaliana unknown protein AT2G47390 mRNA, complete cds
          Length = 3604

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Plus

                                                                        
Query: 271  tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
            |||| |||| ||| ||||| | || ||| |||||||| |||||||| || ||||||||||
Sbjct: 3423 tctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttcc 3482

                          
Query: 331  acataccaccagca 344
            | | ||||||||||
Sbjct: 3483 aaagaccaccagca 3496
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>ref|NM_130306.2| Arabidopsis thaliana cytochrome-c oxidase AT2G47380 mRNA, complete
           cds
          Length = 422

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 271 tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
           |||| |||| ||| ||||| | || ||| |||||||| |||||||| || ||||||||||
Sbjct: 222 tctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttcc 163

                         
Query: 331 acataccaccagca 344
           | | ||||||||||
Sbjct: 162 aaagaccaccagca 149
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>gb|AY072780.1| Helianthus annuus cytochrome c oxidase subunit 5c (COX5c-1) mRNA,
           complete cds
          Length = 342

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                 
Query: 303 ctctgctcgttccagtgatgcatcttccacataccacc 340
           ||||||||||||||||| ||||||||||| | ||||||
Sbjct: 189 ctctgctcgttccagtggtgcatcttccataaaccacc 152
to top
>gb|AC002337.3| Arabidopsis thaliana chromosome 2 clone T8I13 map CIC06C03, complete
             sequence
          Length = 88068

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                         
Query: 271   tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
             |||| |||| ||| ||||| | || ||| |||||||| |||||||| || ||||||||||
Sbjct: 76129 tctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttcc 76070

                           
Query: 331   acataccaccagca 344
             | | ||||||||||
Sbjct: 76069 aaagaccaccagca 76056
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>gb|AY093734.1| Arabidopsis thaliana At2g47380/T8I13.22 mRNA, complete cds
          Length = 195

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 271 tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
           |||| |||| ||| ||||| | || ||| |||||||| |||||||| || ||||||||||
Sbjct: 160 tctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttcc 101

                         
Query: 331 acataccaccagca 344
           | | ||||||||||
Sbjct: 100 aaagaccaccagca 87
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>gb|AY070752.1| Arabidopsis thaliana At2g47380/T8I13.22 mRNA, complete cds
          Length = 422

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 271 tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
           |||| |||| ||| ||||| | || ||| |||||||| |||||||| || ||||||||||
Sbjct: 222 tctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttcc 163

                         
Query: 331 acataccaccagca 344
           | | ||||||||||
Sbjct: 162 aaagaccaccagca 149
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>emb|BX820449.1|CNS0A8OO Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH35ZC04 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 437

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 271 tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
           |||| |||| ||| ||||| | || ||| |||||||| |||||||| || ||||||||||
Sbjct: 207 tctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttcc 148

                         
Query: 331 acataccaccagca 344
           | | ||||||||||
Sbjct: 147 aaagaccaccagca 134
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>emb|BX821087.1|CNS0A85I Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL13ZE12 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 497

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 62/74 (83%)
 Strand = Plus / Minus

                                                                       
Query: 271 tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
           |||| |||| ||| ||||| | || ||| |||||||| |||||||| || ||||||||||
Sbjct: 239 tctcaagcaagtcatagaaagttctggttttcctctgttcgttccaatggtgcatcttcc 180

                         
Query: 331 acataccaccagca 344
           | | ||||||||||
Sbjct: 179 aaagaccaccagca 166
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>ref|NM_116105.2| Arabidopsis thaliana unknown protein AT3G62400 transcript variant
           AT3G62400.1 mRNA, complete cds
          Length = 522

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           ||||||||||| ||||| || ||||||||||| | ||||||||||
Sbjct: 216 ttcctctgctcattccaatggtgcatcttccagagaccaccagca 172
to top
>ref|NM_180407.2| Arabidopsis thaliana unknown protein AT3G62400 transcript variant
           AT3G62400.2 mRNA, complete cds
          Length = 483

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           ||||||||||| ||||| || ||||||||||| | ||||||||||
Sbjct: 189 ttcctctgctcattccaatggtgcatcttccagagaccaccagca 145
to top
>gb|AC151956.5| Medicago truncatula clone mth2-52p17, complete sequence
          Length = 120704

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Minus

                                                                         
Query: 303   ctctgctcgttccagtgatgcatcttccacataccaccagcaaccagcccaagggtgagt 362
             ||||| || ||||| |||||||||||||| | |||||||||||| |  ||||| |||| |
Sbjct: 37142 ctctgttcattccaatgatgcatcttccatacaccaccagcaactaaaccaagtgtgatt 37083

                  
Query: 363   ccaat 367
             |||||
Sbjct: 37082 ccaat 37078
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>emb|BX821474.1|CNS0A87N Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL44ZD02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 449

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           |||||||| |||||||| || ||||||||||| | ||||||||||
Sbjct: 177 ttcctctgttcgttccaatggtgcatcttccaaagaccaccagca 133
to top
>emb|BX821469.1|CNS0A86G Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL44ZB08 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 480

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           |||||||| |||||||| || ||||||||||| | ||||||||||
Sbjct: 179 ttcctctgttcgttccaatggtgcatcttccaaagaccaccagca 135
to top
>emb|BX826120.1|CNS0A7IC Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL85ZF02 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 440

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           ||||||||||| ||||| || ||||||||||| | ||||||||||
Sbjct: 166 ttcctctgctcattccaatggtgcatcttccagagaccaccagca 122
to top
>emb|BX825286.1|CNS0A7K2 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL26ZG11 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 456

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           ||||||||||| ||||| || ||||||||||| | ||||||||||
Sbjct: 181 ttcctctgctcattccaatggtgcatcttccagagaccaccagca 137
to top
>emb|BX841637.1|CNS09YIY Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTFB86ZF12 of Flowers and buds of strain col-0 of
           Arabidopsis thaliana (thale cress)
          Length = 398

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 52/61 (85%)
 Strand = Plus / Plus

                                                                       
Query: 271 tctcgagcatgtcgtagaaggatcgggtcttcctctgctcgttccagtgatgcatcttcc 330
           |||| |||| ||| ||||| |||| ||| |||||||| |||||||| || ||||||||||
Sbjct: 183 tctcaagcaagtcatagaaagatctggttttcctctgttcgttccaatggtgcatcttcc 242

            
Query: 331 a 331
           |
Sbjct: 243 a 243
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>gb|BT004284.1| Arabidopsis thaliana clone RAFL15-37-F21 (R50133) putative
           cytochrome c oxidase subunit (At3g62400) mRNA, complete
           cds
          Length = 1085

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           ||||||||||| ||||| || ||||||||||| | ||||||||||
Sbjct: 763 ttcctctgctcattccaatggtgcatcttccagagaccaccagca 719
to top
>gb|AY088996.1| Arabidopsis thaliana clone 14169 mRNA, complete sequence
          Length = 522

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                        
Query: 300 ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
           ||||||||||| ||||| || ||||||||||| | ||||||||||
Sbjct: 216 ttcctctgctcattccaatggtgcatcttccagagaccaccagca 172
to top
>emb|AL162507.1|ATT12C14 Arabidopsis thaliana DNA chromosome 3, BAC clone T12C14
          Length = 77720

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 40/45 (88%)
 Strand = Plus / Minus

                                                          
Query: 300   ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
             ||||||||||| ||||| || ||||||||||| | ||||||||||
Sbjct: 33663 ttcctctgctcattccaatggtgcatcttccagagaccaccagca 33619
to top
>gb|S73602.1| cytochrome c oxidase subunit Vc [Ipomoea batatas=sweet potatoes,
            Genomic, 3268 nt]
          Length = 3268

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                            
Query: 258  ctgatctgccccttctcgagcatgtcgtagaa 289
            |||||||| ||||||||||||||||| |||||
Sbjct: 2956 ctgatctgacccttctcgagcatgtcatagaa 2925
to top
>emb|X53393.1|IBCYXVC Sweet potato mRNA for cytochrome c oxidase subunit Vc
          Length = 455

 Score = 48.1 bits (24), Expect = 0.027
 Identities = 30/32 (93%)
 Strand = Plus / Minus

                                           
Query: 258 ctgatctgccccttctcgagcatgtcgtagaa 289
           |||||||| ||||||||||||||||| |||||
Sbjct: 185 ctgatctgacccttctcgagcatgtcatagaa 154
to top
>dbj|AK207360.1| Mus musculus cDNA, clone:Y2G0107M06, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000006151, based on BLAT search
          Length = 394

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  aatgttctcaaatggtggtgtg 111
           ||||||||||||||||||||||
Sbjct: 285 aatgttctcaaatggtggtgtg 264
to top
>dbj|AK195260.1| Mus musculus cDNA, clone:Y1G0117O10, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000006151, based on BLAT search
          Length = 392

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  aatgttctcaaatggtggtgtg 111
           ||||||||||||||||||||||
Sbjct: 283 aatgttctcaaatggtggtgtg 262
to top
>dbj|AK191697.1| Mus musculus cDNA, clone:Y1G0106K24, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000006151, based on BLAT search
          Length = 426

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 90  aatgttctcaaatggtggtgtg 111
           ||||||||||||||||||||||
Sbjct: 317 aatgttctcaaatggtggtgtg 296
to top
>gb|AC118200.8| Mus musculus chromosome 5, clone RP23-330E5, complete sequence
          Length = 208710

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 348   agcccaagggtgagtccaatg 368
             |||||||||||||||||||||
Sbjct: 73840 agcccaagggtgagtccaatg 73860
to top
>gb|DQ491003.1| Chlorella virus AR158 ctg_1047243734156 genomic sequence
          Length = 344691

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 464    ttgccgccgccggaggagaag 484
              |||||||||||||||||||||
Sbjct: 319880 ttgccgccgccggaggagaag 319860
to top
>gb|DQ491002.1| Paramecium bursaria Chlorella virus NY2A Chlorella virus NY2A ctg_13
             genomic sequence
          Length = 368683

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 464   ttgccgccgccggaggagaag 484
             |||||||||||||||||||||
Sbjct: 31410 ttgccgccgccggaggagaag 31430
to top
>ref|XM_312587.2| Anopheles gambiae str. PEST ENSANGP00000001263
           (ENSANGG00000001081), partial mRNA
          Length = 1653

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 368 gaagatctccttcaccacgctcggc 392
           |||||||||||||||| ||||||||
Sbjct: 57  gaagatctccttcacctcgctcggc 33
to top
>dbj|AP006137.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT37K17, TM0239,
             complete sequence
          Length = 106506

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 39/45 (86%)
 Strand = Plus / Plus

                                                          
Query: 300   ttcctctgctcgttccagtgatgcatcttccacataccaccagca 344
             |||||||| || ||||| |||||||||||||| | || |||||||
Sbjct: 57548 ttcctctgttcattccaatgatgcatcttccagacactaccagca 57592
to top
>ref|XM_481337.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 547

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 gccttgccgccgccggagga 480
           ||||||||||||||||||||
Sbjct: 29  gccttgccgccgccggagga 10
to top
>ref|XM_469168.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1099

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 gccttgccgccgccggagga 480
           ||||||||||||||||||||
Sbjct: 46  gccttgccgccgccggagga 27
to top
>ref|XM_469167.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 854

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 gccttgccgccgccggagga 480
           ||||||||||||||||||||
Sbjct: 32  gccttgccgccgccggagga 13
to top
>gb|BC073206.1| Xenopus laevis MGC80481 protein, mRNA (cDNA clone MGC:80481
            IMAGE:5156566), complete cds
          Length = 2645

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 125  caatctccacagcaatcactctgt 148
            |||| |||||||||||||||||||
Sbjct: 2211 caatatccacagcaatcactctgt 2188
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 461      gccttgccgccgccggagga 480
                ||||||||||||||||||||
Sbjct: 25851735 gccttgccgccgccggagga 25851754



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 461     gccttgccgccgccggagga 480
               ||||||||||||||||||||
Sbjct: 8224293 gccttgccgccgccggagga 8224312
to top
>gb|AY495597.1| Gibberella moniliformis polyketide synthase (PKS7) gene, complete cds
          Length = 11078

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 180  gcaaaaccgaaatggcaaaa 199
            ||||||||||||||||||||
Sbjct: 8951 gcaaaaccgaaatggcaaaa 8970
to top
>gb|AC145387.2| Oryza sativa chromosome 3 BAC OSJNBb0031A14 genomic sequence, complete
             sequence
          Length = 44761

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 461   gccttgccgccgccggagga 480
             ||||||||||||||||||||
Sbjct: 22678 gccttgccgccgccggagga 22697
to top
>emb|CR388077.11| Zebrafish DNA sequence from clone CH211-286E11 in linkage group 8,
             complete sequence
          Length = 192705

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ttactggcaaaaccgaaatg 193
             ||||||||||||||||||||
Sbjct: 28516 ttactggcaaaaccgaaatg 28535
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>gb|DQ459071.1| Sorghum bicolor cultivar BTx623 clone BAC c0156b06, complete sequence
          Length = 112592

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 52    atatttgatatgacgagaaa 71
             ||||||||||||||||||||
Sbjct: 16556 atatttgatatgacgagaaa 16537
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>gb|AC122143.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0090F16, complete sequence
          Length = 147341

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    ccgccgccggaggagaagag 486
              ||||||||||||||||||||
Sbjct: 119021 ccgccgccggaggagaagag 119002
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>emb|BX908784.6| Zebrafish DNA sequence from clone DKEY-69I13, complete sequence
          Length = 116059

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 174   ttactggcaaaaccgaaatg 193
             ||||||||||||||||||||
Sbjct: 57727 ttactggcaaaaccgaaatg 57746
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>emb|AL954693.5| Zebrafish DNA sequence from clone BUSM1-146N9 in linkage group 14
             Contains part of a novel gene similar to human GCN1
             (general control of amino-acid synthesis 1-like 1
             (yeast)), part of  anovel gene similar to human RAB35
             (member of RAS oncogene family) and four CpG islands,
             complete sequence
          Length = 107343

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ttactggcaaaaccgaaatg 193
             ||||||||||||||||||||
Sbjct: 88563 ttactggcaaaaccgaaatg 88544
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>emb|BX957247.4| Zebrafish DNA sequence from clone DKEYP-117H10 in linkage group 23,
             complete sequence
          Length = 166306

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 174   ttactggcaaaaccgaaatg 193
             ||||||||||||||||||||
Sbjct: 15100 ttactggcaaaaccgaaatg 15081
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>emb|BX537335.12| Zebrafish DNA sequence from clone DKEYP-84G9 in linkage group 23,
              complete sequence
          Length = 186566

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    ttactggcaaaaccgaaatg 193
              ||||||||||||||||||||
Sbjct: 103883 ttactggcaaaaccgaaatg 103902
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>gb|AC154697.2| Mus musculus BAC clone RP23-136A22 from chromosome 13, complete sequence
          Length = 202379

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     atccctgaatttgtttgcaa 33
              ||||||||||||||||||||
Sbjct: 122321 atccctgaatttgtttgcaa 122302
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>emb|BX544881.7| Zebrafish DNA sequence from clone DKEY-64F15 in linkage group 14,
              complete sequence
          Length = 163842

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    ttactggcaaaaccgaaatg 193
              ||||||||||||||||||||
Sbjct: 163100 ttactggcaaaaccgaaatg 163119
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>gb|S76743.1| cop-2=cruxrhodopsin-2 [Haloarcula, arg-2, Andes heights isolate,
           Genomic, 959 nt]
          Length = 959

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 204 tcgcgatgtagaacttctgg 223
           ||||||||||||||||||||
Sbjct: 277 tcgcgatgtagaacttctgg 258
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>emb|BX855617.8| Zebrafish DNA sequence from clone DKEYP-123H10 in linkage group 1,
              complete sequence
          Length = 160094

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 38     tatgagacaaagacatattt 57
              ||||||||||||||||||||
Sbjct: 154333 tatgagacaaagacatattt 154314
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 24703467 ccgccgccggaggagaagag 24703486
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 461      gccttgccgccgccggagga 480
                ||||||||||||||||||||
Sbjct: 11632646 gccttgccgccgccggagga 11632627
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 461     gccttgccgccgccggagga 480
               ||||||||||||||||||||
Sbjct: 8642713 gccttgccgccgccggagga 8642694
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 461      gccttgccgccgccggagga 480
                ||||||||||||||||||||
Sbjct: 23411962 gccttgccgccgccggagga 23411943



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 22062156 ccgccgccggaggagaagag 22062175
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 461      gccttgccgccgccggagga 480
                ||||||||||||||||||||
Sbjct: 25943044 gccttgccgccgccggagga 25943063



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 461     gccttgccgccgccggagga 480
               ||||||||||||||||||||
Sbjct: 8222128 gccttgccgccgccggagga 8222147
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 19265601 ccgccgccggaggagaagag 19265620



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 16223287 ccgccgccggaggagaagag 16223268
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>gb|AC134234.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0019J12,
              complete sequence
          Length = 195583

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    gccttgccgccgccggagga 480
              ||||||||||||||||||||
Sbjct: 155723 gccttgccgccgccggagga 155742
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>gb|AC055717.36| Homo sapiens 12 BAC RP11-572C21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 204425

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    caatgttctcaaatggtggt 108
             ||||||||||||||||||||
Sbjct: 74618 caatgttctcaaatggtggt 74599
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>ref|XM_238398.3| PREDICTED: Rattus norvegicus tyrosinase-related protein 1 (Tyrp1),
           mRNA
          Length = 2025

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 90  aatgttctcaaatggtggtgtgct 113
           ||||||||||||| ||||||||||
Sbjct: 957 aatgttctcaaattgtggtgtgct 934
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>gb|AF003626.2| Homo sapiens chromosome X clone ICRFXc104-M0525, LL0XNC01-C1233,
             ICRFXc104-C1284, Qc-3C1, LL0XNC01-B1439, LL0XNC01-220B3,
             LL0XNC01-57B6, Qc-12C11 map q28, complete sequence
          Length = 86834

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 340   cagcaaccagcccaagggtg 359
             ||||||||||||||||||||
Sbjct: 43929 cagcaaccagcccaagggtg 43948
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>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
            clone:OSJNBa0039C01
          Length = 151054

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 461  gccttgccgccgccggagga 480
            ||||||||||||||||||||
Sbjct: 1354 gccttgccgccgccggagga 1335
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>dbj|AP004694.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0467G09
          Length = 158204

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   gccttgccgccgccggagga 480
             ||||||||||||||||||||
Sbjct: 92917 gccttgccgccgccggagga 92898
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>dbj|AP003612.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0457B11
          Length = 144015

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 461    gccttgccgccgccggagga 480
              ||||||||||||||||||||
Sbjct: 130935 gccttgccgccgccggagga 130916
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>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 375     tccttcaccacgctcggccccttg 398
               |||||||||||||||||| |||||
Sbjct: 1973694 tccttcaccacgctcggcgccttg 1973671
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>dbj|AP005461.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0612G07
          Length = 182548

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 467    ccgccgccggaggagaagag 486
              ||||||||||||||||||||
Sbjct: 100029 ccgccgccggaggagaagag 100048
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>dbj|AP003615.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0486H12
          Length = 179085

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   gccttgccgccgccggagga 480
             ||||||||||||||||||||
Sbjct: 71517 gccttgccgccgccggagga 71498
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>dbj|AP005255.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0087F05
          Length = 143908

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 461   gccttgccgccgccggagga 480
             ||||||||||||||||||||
Sbjct: 56453 gccttgccgccgccggagga 56434
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>emb|BX248122.10| Zebrafish DNA sequence from clone CH211-214C20 in linkage group 4,
              complete sequence
          Length = 216208

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 174    ttactggcaaaaccgaaatg 193
              ||||||||||||||||||||
Sbjct: 107101 ttactggcaaaaccgaaatg 107082
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>emb|BX537115.11| Zebrafish DNA sequence from clone CH211-207B20 in linkage group 14,
              complete sequence
          Length = 192331

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 174    ttactggcaaaaccgaaatg 193
              ||||||||||||||||||||
Sbjct: 167518 ttactggcaaaaccgaaatg 167537
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>dbj|AP004777.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0458B05
          Length = 144917

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   ccgccgccggaggagaagag 486
             ||||||||||||||||||||
Sbjct: 33399 ccgccgccggaggagaagag 33418
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>dbj|AP005067.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487H05
          Length = 176057

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 467   ccgccgccggaggagaagag 486
             ||||||||||||||||||||
Sbjct: 57774 ccgccgccggaggagaagag 57755
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>dbj|AP005065.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0046H03
          Length = 137020

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 467    ccgccgccggaggagaagag 486
              ||||||||||||||||||||
Sbjct: 115616 ccgccgccggaggagaagag 115597
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>dbj|AK111383.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-182-B09, full
           insert sequence
          Length = 544

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 gccttgccgccgccggagga 480
           ||||||||||||||||||||
Sbjct: 29  gccttgccgccgccggagga 10
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>dbj|AK073375.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028M15, full
           insert sequence
          Length = 1950

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 gccttgccgccgccggagga 480
           ||||||||||||||||||||
Sbjct: 60  gccttgccgccgccggagga 41
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>dbj|AK063414.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-B07, full
           insert sequence
          Length = 3278

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 461 gccttgccgccgccggagga 480
           ||||||||||||||||||||
Sbjct: 60  gccttgccgccgccggagga 41
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>emb|CT009557.4| Pan troglodytes chromosome X clone PTB-010G23 map Xq28, complete sequence
          Length = 244504

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 340    cagcaaccagcccaagggtg 359
              ||||||||||||||||||||
Sbjct: 217949 cagcaaccagcccaagggtg 217930
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 467      ccgccgccggaggagaagag 486
                ||||||||||||||||||||
Sbjct: 25015137 ccgccgccggaggagaagag 25015156
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>emb|AL844499.5|CNS08CAW Oryza sativa chromosome 12, . BAC OSJNBb0092K12 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 129540

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 467   ccgccgccggaggagaagag 486
             ||||||||||||||||||||
Sbjct: 43464 ccgccgccggaggagaagag 43483
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>emb|AL732640.4|CNS08C9F Oryza sativa chromosome 12, . BAC OSJNBa0022K16 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 183414

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 467    ccgccgccggaggagaagag 486
              ||||||||||||||||||||
Sbjct: 106702 ccgccgccggaggagaagag 106721


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,600,440
Number of Sequences: 3902068
Number of extensions: 4600440
Number of successful extensions: 83262
Number of sequences better than 10.0: 91
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82649
Number of HSP's gapped (non-prelim): 611
length of query: 489
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 467
effective length of database: 17,147,199,772
effective search space: 8007742293524
effective search space used: 8007742293524
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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