>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score =  143 bits (72), Expect = 3e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 100  gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 159
            |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2013 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 1954

                                                                        
Query: 160  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 219
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 1953 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 1894

                                
Query: 220  atcaactcgaggacctccat 239
            ||||  || |||||||||||
Sbjct: 1893 atcagttcaaggacctccat 1874

>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  143 bits (72), Expect = 3e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                            
Query: 100      gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 159
                |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24723752 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24723693

                                                                            
Query: 160      agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 219
                |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24723692 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24723633

                                    
Query: 220      atcaactcgaggacctccat 239
                ||||  || |||||||||||
Sbjct: 24723632 atcagttcaaggacctccat 24723613

>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score =  143 bits (72), Expect = 3e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                         
Query: 100   gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 159
             |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24553 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24494

                                                                         
Query: 160   agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 219
             |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24493 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24434

                                 
Query: 220   atcaactcgaggacctccat 239
             ||||  || |||||||||||
Sbjct: 24433 atcagttcaaggacctccat 24414

>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score =  143 bits (72), Expect = 3e-31
 Identities = 123/140 (87%)
 Strand = Plus / Minus

                                                                        
Query: 100  gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 159
            |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2350 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 2291

                                                                        
Query: 160  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 219
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 2290 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 2231

                                
Query: 220  atcaactcgaggacctccat 239
            ||||  || |||||||||||
Sbjct: 2230 atcagttcaaggacctccat 2211

>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score =  119 bits (60), Expect = 4e-24
 Identities = 117/136 (86%)
 Strand = Plus / Minus

                                                                         
Query: 104   tggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagca 163
             |||| |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |
Sbjct: 27043 tggaaacttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaata 26984

                                                                         
Query: 164   ccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatca 223
             ||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 26983 ccaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatca 26924

                             
Query: 224   actcgaggacctccat 239
             | || |||| ||||||
Sbjct: 26923 attcaaggaactccat 26908

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  119 bits (60), Expect = 4e-24
 Identities = 117/136 (86%)
 Strand = Plus / Minus

                                                                            
Query: 104      tggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagca 163
                |||| |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |
Sbjct: 10810111 tggaaacttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaata 10810052

                                                                            
Query: 164      ccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatca 223
                ||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 10810051 ccaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatca 10809992

                                
Query: 224      actcgaggacctccat 239
                | || |||| ||||||
Sbjct: 10809991 attcaaggaactccat 10809976

>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score =  105 bits (53), Expect = 6e-20
 Identities = 125/149 (83%)
 Strand = Plus / Minus

                                                                       
Query: 91  ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 150
           |||||||||||||  || || |||||||| ||||| || ||||| ||||| |||||||| 
Sbjct: 903 ttttatcaagccagagagacctcaagggatgactttgccagccatagcaatccaggatca 844

                                                                       
Query: 151 ttcctcttcagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcg 210
           ||||| ||||  |||||||| ||||| |||||||||| |||||| ||||  |||||||| 
Sbjct: 843 ttccttttcaataccaggtaagtctcagcacgcccaacctcatctgagattacatcctca 784

                                        
Query: 211 cagaagccaatcaactcgaggacctccat 239
           ||||| |||||||| || || ||||||||
Sbjct: 783 cagaaaccaatcaattcaagaacctccat 755

>gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker
          Length = 286

 Score = 63.9 bits (32), Expect = 2e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 91  ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 150
           |||||||||||||  || || |||||||||||||| || ||||| ||||| |||||||| 
Sbjct: 203 ttttatcaagccagagagacctcaagggaggactttgccagccatagcaatccaggatca 262

                               
Query: 151 ttcctcttcagcaccaggta 170
           ||||| ||||  ||||||||
Sbjct: 263 ttccttttcaataccaggta 282

>gb|DQ207725.1| Zea mays cultivar inbred line Mo17 IDP525 marker
          Length = 406

 Score = 56.0 bits (28), Expect = 5e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 91  ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 150
           |||||||||||||  || || |||||||| ||||| || ||||| ||||| |||||||| 
Sbjct: 326 ttttatcaagccagagagacctcaagggatgactttgccagccatagcaatccaggatca 385

                               
Query: 151 ttcctcttcagcaccaggta 170
           ||||| ||||  ||||||||
Sbjct: 386 ttccttttcaataccaggta 405

>emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromosome 4, complete sequence
          Length = 131053

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    agccacagcaacccaggatc 149
              ||||||||||||||||||||
Sbjct: 114977 agccacagcaacccaggatc 114996

>emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 490B10
          Length = 154782

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    agccacagcaacccaggatc 149
              ||||||||||||||||||||
Sbjct: 114031 agccacagcaacccaggatc 114012

>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete
             sequence
          Length = 122162

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 76694 agccacagcaacccaggatc 76713

>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete
             sequence
          Length = 166118

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 29160 agccacagcaacccaggatc 29141

>emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chromosome 7, complete
              sequence
          Length = 175108

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    agccacagcaacccaggatc 149
              ||||||||||||||||||||
Sbjct: 162018 agccacagcaacccaggatc 162037

>emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chromosome 7, complete
              sequence
          Length = 175487

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 130    agccacagcaacccaggatc 149
              ||||||||||||||||||||
Sbjct: 144535 agccacagcaacccaggatc 144516

>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24,
             complete sequence
          Length = 105329

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 150   gttcctcttcagcaccaggt 169
             ||||||||||||||||||||
Sbjct: 25779 gttcctcttcagcaccaggt 25760

>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for
              S-adenosylhomocysteine hydrolase
          Length = 204138

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    agccacagcaacccaggatc 149
              ||||||||||||||||||||
Sbjct: 148219 agccacagcaacccaggatc 148238

>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 76526 agccacagcaacccaggatc 76545



 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 130  agccacagcaacccaggatc 149
            ||||||||||||||||||||
Sbjct: 7098 agccacagcaacccaggatc 7117

>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence
          Length = 76665

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 130  agccacagcaacccaggatc 149
            ||||||||||||||||||||
Sbjct: 6678 agccacagcaacccaggatc 6659

>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 130    agccacagcaacccaggatc 149
              ||||||||||||||||||||
Sbjct: 346739 agccacagcaacccaggatc 346758

>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 15925 agccacagcaacccaggatc 15906

>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    tgaaatgtcatgatatacag 54
             ||||||||||||||||||||
Sbjct: 24000 tgaaatgtcatgatatacag 23981

>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 82183 agccacagcaacccaggatc 82202

>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
             S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 29241 agccacagcaacccaggatc 29260

>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence
          Length = 155710

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 24945 agccacagcaacccaggatc 24926

>gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence
          Length = 125904

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 68226 agccacagcaacccaggatc 68245

>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence
          Length = 93393

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 47778 agccacagcaacccaggatc 47759

>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 35   tgaaatgtcatgatatacag 54
            ||||||||||||||||||||
Sbjct: 3700 tgaaatgtcatgatatacag 3719

>gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromosome ul, complete
             sequence
          Length = 260878

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 96    tcaagccatggatacttcaaggga 119
             |||||||| |||||||||||||||
Sbjct: 27561 tcaagccaaggatacttcaaggga 27538

>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
             sequence
          Length = 168798

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 57612 agccacagcaacccaggatc 57593

>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 3.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 130   agccacagcaacccaggatc 149
             ||||||||||||||||||||
Sbjct: 19794 agccacagcaacccaggatc 19775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,650,326
Number of Sequences: 3902068
Number of extensions: 1650326
Number of successful extensions: 28943
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28768
Number of HSP's gapped (non-prelim): 175
length of query: 241
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 219
effective length of database: 17,147,199,772
effective search space: 3755236750068
effective search space used: 3755236750068
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)