ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC117184.3| Mus musculus BAC clone RP23-37L10 from chromosome... 36 3.3
2gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 36 3.3
3gb|AC134043.1| Homo sapiens chromosome 5 clone RP11-175K6, compl... 36 3.3
4gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, comple... 36 3.3
5gb|AC007200.1| Homo sapiens chromosome 5 Bac clone CTB-54K3, com... 36 3.3
6emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 36 3.3

>gb|AC117184.3| Mus musculus BAC clone RP23-37L10 from chromosome 7, complete sequence
          Length = 187341

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 15    agccagagttctacccct 32
             ||||||||||||||||||
Sbjct: 94698 agccagagttctacccct 94681



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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete
            sequence
          Length = 177226

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                              
Query: 13   gcagccagagttctaccc 30
            ||||||||||||||||||
Sbjct: 3842 gcagccagagttctaccc 3825



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>gb|AC134043.1| Homo sapiens chromosome 5 clone RP11-175K6, complete sequence
          Length = 154098

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 2     acacgttaanggcagccagag 22
             ||||||||| |||||||||||
Sbjct: 91167 acacgttaagggcagccagag 91147



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>gb|AC011376.5| Homo sapiens chromosome 5 clone CTB-11I22, complete sequence
          Length = 132768

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                  
Query: 2     acacgttaanggcagccagag 22
             ||||||||| |||||||||||
Sbjct: 13085 acacgttaagggcagccagag 13105



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>gb|AC007200.1| Homo sapiens chromosome 5 Bac clone CTB-54K3, complete sequence
          Length = 99670

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 2     acacgttaanggcagccagag 22
             ||||||||| |||||||||||
Sbjct: 13136 acacgttaagggcagccagag 13116



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>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 36.2 bits (18), Expect = 3.3
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     gcagccagagttctaccc 30
              ||||||||||||||||||
Sbjct: 113254 gcagccagagttctaccc 113237


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 114,773
Number of Sequences: 3902068
Number of extensions: 114773
Number of successful extensions: 36481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36470
Number of HSP's gapped (non-prelim): 11
length of query: 35
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 15
effective length of database: 17,155,003,908
effective search space: 257325058620
effective search space used: 257325058620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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