ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags4m02 |
|---|---|
| Clone Library Name | barley_pub |
>RS10_ORYSA (Q9AYP4) 40S ribosomal protein S10| Length = 183 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/92 (35%), Positives = 36/92 (39%), Gaps = 2/92 (2%) Frame = -3 Query: 561 YWYLTNDGH*VPPHLPSTXXXXXXXXXXXXXXXXX--XXXXXLAHPGDRPRGPPRFEXXX 388 YWYLTNDG HL + PGDRPRGPPRFE Sbjct: 65 YWYLTNDGI---EHLLNYLNLPSEIVPATLKKSARPPGRPFGSGPPGDRPRGPPRFEGDR 121 Query: 387 XXXXXXXXXXXXXXXXXXDFAGEKGGAPADYQ 292 DF GEKGGAPA++Q Sbjct: 122 PRFGDRDGYRGGPRGAPGDFGGEKGGAPAEFQ 153
>RS10C_ARATH (Q9LTF2) 40S ribosomal protein S10-3| Length = 179 Score = 36.6 bits (83), Expect(2) = 0.006 Identities = 21/47 (44%), Positives = 22/47 (46%) Frame = -3 Query: 432 PGDRPRGPPRFEXXXXXXXXXXXXXXXXXXXXXDFAGEKGGAPADYQ 292 PGDR RGP R E +F GEKGGAPADYQ Sbjct: 106 PGDRSRGP-RHEGGDRPRFGDRDGYRAGPRAGGEFGGEKGGAPADYQ 151 Score = 22.3 bits (46), Expect(2) = 0.006 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = -2 Query: 499 EIVPNTLKKSAK 464 ++VP TLKKSAK Sbjct: 85 DVVPATLKKSAK 96
>CREB5_MOUSE (Q8K1L0) cAMP response element-binding protein 5 (CRE-BPa)| (Fragment) Length = 353 Score = 37.4 bits (85), Expect = 0.031 Identities = 26/83 (31%), Positives = 31/83 (37%) Frame = +3 Query: 222 QNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQ 401 Q++T H LH H P Q HP+H + Q HH NHP HH+ H Sbjct: 111 QDQTPHHHLHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQ---NHPHHHS---HSH 164 Query: 402 NEEDPWGGHPGGPEPKGRDGGLA 470 P H P P G A Sbjct: 165 LHAHP-AHHQTSPHPPLHTGNQA 186
>CREB5_HUMAN (Q02930) cAMP response element-binding protein 5 (CRE-BPa)| Length = 508 Score = 36.6 bits (83), Expect = 0.052 Identities = 25/83 (30%), Positives = 31/83 (37%) Frame = +3 Query: 222 QNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQ 401 Q++T H +H H P Q HP+H + Q HH NHP HH+ H Sbjct: 266 QDQTPHHHMHSHPHQHQTLPPHHPYPHQHQHPAHHPHPQPHHQQ---NHPHHHS---HSH 319 Query: 402 NEEDPWGGHPGGPEPKGRDGGLA 470 P H P P G A Sbjct: 320 LHAHP-AHHQTSPHPPLHTGNQA 341
>HRG_HUMAN (P04196) Histidine-rich glycoprotein precursor| (Histidine-proline-rich glycoprotein) (HPRG) Length = 525 Score = 34.7 bits (78), Expect = 0.20 Identities = 29/103 (28%), Positives = 33/103 (32%) Frame = +3 Query: 168 PVGCSHLLKCSFFTPWKVQNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHH 347 P+ CS +F T R H + HP K +Q H H H H Sbjct: 321 PMSCSSCQHATFGT------NGAQRHSHNNNS-SDLHPHKHHSHEQHPHGHHPHAHHPHE 373 Query: 348 VGLLCNHPCHHT*ACHPQNEEDPWGGHPGGPEPKGRDGGLADF 476 HP H HP P G HP G P G DF Sbjct: 374 HDTHRQHPHGH----HPHGHH-PHGHHPHGHHPHGHHPHCHDF 411
>BTD_DROME (Q24266) Transcription factor btd (Protein buttonhead)| Length = 644 Score = 34.7 bits (78), Expect = 0.20 Identities = 17/52 (32%), Positives = 27/52 (51%), Gaps = 2/52 (3%) Frame = +3 Query: 195 CSFFTPWKVQNRTCHRR--LHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEH 344 C++ P+ Q++ ++ H Q A QH + +Q LH SHQQ Q+H Sbjct: 6 CNYLNPYAQQHQAQQQQHAQHQQHAQQQQHHLHMQQAQHHLHLSHQQAQQQH 57
>MN1_HUMAN (Q10571) Probable tumor suppressor protein MN1| Length = 1319 Score = 33.9 bits (76), Expect = 0.34 Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 11/64 (17%) Frame = +3 Query: 288 LAGSQQELHPSHQQNHQEHHVGLLCNHPCH-----------HT*ACHPQNEEDPWGGHPG 434 + G E + H + H E H G L P H H + HP +GG+ G Sbjct: 60 ILGMNMEPYGFHARGHSELHAGGLQAQPVHGFFGGQQPHHGHPGSHHPHQHHPHFGGNFG 119 Query: 435 GPEP 446 GP+P Sbjct: 120 GPDP 123
>RS10A_ARATH (Q9SW09) 40S ribosomal protein S10-1| Length = 177 Score = 30.4 bits (67), Expect(2) = 0.34 Identities = 18/47 (38%), Positives = 20/47 (42%) Frame = -3 Query: 432 PGDRPRGPPRFEXXXXXXXXXXXXXXXXXXXXXDFAGEKGGAPADYQ 292 PGDR RGPPR + EKGGAPAD+Q Sbjct: 106 PGDRQRGPPRSDGDRPRFGDRDGYRGGPRG-----GDEKGGAPADFQ 147 Score = 22.3 bits (46), Expect(2) = 0.34 Identities = 9/12 (75%), Positives = 11/12 (91%) Frame = -2 Query: 499 EIVPNTLKKSAK 464 ++VP TLKKSAK Sbjct: 85 DVVPATLKKSAK 96
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 33.5 bits (75), Expect = 0.44 Identities = 27/86 (31%), Positives = 31/86 (36%), Gaps = 8/86 (9%) Frame = +3 Query: 231 TCHRRLHGQRAWHHQH-----P*KLAGSQQELHP-SHQQNHQEHHVGLLCNHPCHHT*AC 392 T +HG HH H +A Q + HP SH +HQ HH HP H A Sbjct: 176 TAASSIHGHAHAHHVHMAAAAAASVAQHQHQSHPHSHHHHHQNHH-----QHP-HQQPAT 229 Query: 393 HPQNEEDPWGGHPG--GPEPKGRDGG 464 P H G GP GG Sbjct: 230 QTALRSPPHSDHGGSVGPATSSSGGG 255
>HRPX_PLALO (P04929) Histidine-rich glycoprotein precursor| Length = 351 Score = 32.3 bits (72), Expect = 0.98 Identities = 19/66 (28%), Positives = 23/66 (34%), Gaps = 2/66 (3%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQN--EE 410 H H HH H L H +H +H+EHH H HH H + Sbjct: 101 HHHHHHHPPHHHHH---LGHHHHHHHAAHHHHHEEHHHHHHAAHHHHHEEHHHHHHAAHH 157 Query: 411 DPWGGH 428 PW H Sbjct: 158 HPWFHH 163 Score = 32.0 bits (71), Expect = 1.3 Identities = 17/53 (32%), Positives = 19/53 (35%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACH 395 H HG HH H G H H +H HH +H HH A H Sbjct: 228 HHHHHGHHHHHHHHH----GHHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 276 Score = 31.6 bits (70), Expect = 1.7 Identities = 17/53 (32%), Positives = 19/53 (35%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACH 395 H HG HH H G H H +H HH +H HH A H Sbjct: 218 HHHHHGHHHHHHHHH----GHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDAHH 266 Score = 31.2 bits (69), Expect = 2.2 Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 1/49 (2%) Frame = +3 Query: 267 HHQHP*KLAGSQQELHPSHQQNHQ-EHHVGLLCNHPCHHT*ACHPQNEE 410 HH HP HP H +H HH L +H HH A H +EE Sbjct: 94 HHHHP----------HPHHHHHHHPPHHHHHLGHHHHHHHAAHHHHHEE 132 Score = 30.8 bits (68), Expect = 2.9 Identities = 18/64 (28%), Positives = 21/64 (32%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDP 416 H H A HH H A H +H HH G +H HH H + D Sbjct: 195 HHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDA 254 Query: 417 WGGH 428 H Sbjct: 255 HHHH 258 Score = 30.8 bits (68), Expect = 2.9 Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 3/63 (4%) Frame = +3 Query: 249 HGQRAWHHQHP*KLAGSQQELHPSH--QQNHQEHHVGLLCNHP-CHHT*ACHPQNEEDPW 419 H HH HP + E H H +++H+ HH +HP HH HP + Sbjct: 56 HLHEEHHHHHPEEHHEPHHEEHHHHHPEEHHEPHHEEHHHHHPHPHHHHHHHPPHHHHHL 115 Query: 420 GGH 428 G H Sbjct: 116 GHH 118 Score = 30.0 bits (66), Expect = 4.9 Identities = 18/64 (28%), Positives = 22/64 (34%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDP 416 H H A HH H + H H +H HH +H HH A H + D Sbjct: 256 HHHHHHHDAHHHHH--HHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHHHHHHHDA 313 Query: 417 WGGH 428 H Sbjct: 314 HHHH 317 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/53 (30%), Positives = 19/53 (35%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACH 395 H HG HH H + H H +H HH +H HH A H Sbjct: 238 HHHHHGHHHHHHHHH----DAHHHHHHHHDAHHHHHHHHDAHHHHHHHHDAHH 286 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/64 (26%), Positives = 20/64 (31%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDP 416 H H A HH H H +H HH G +H HH H + D Sbjct: 205 HHHHHHHHAPHHHHHHHHGHHHHHHHHHGHHHHHHHHHGHHHHHHHHHDAHHHHHHHHDA 264 Query: 417 WGGH 428 H Sbjct: 265 HHHH 268 Score = 29.3 bits (64), Expect = 8.3 Identities = 15/48 (31%), Positives = 17/48 (35%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHH 380 H H A HH H A H +H HH G +H HH Sbjct: 185 HHHHHHHHAPHHHHHHHHAPHHHHHHHHAPHHHHHHHHGHHHHHHHHH 232
>CCG8_NEUCR (Q01306) Clock-controlled protein 8| Length = 661 Score = 32.3 bits (72), Expect = 0.98 Identities = 15/43 (34%), Positives = 18/43 (41%), Gaps = 6/43 (13%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELH------PSHQQNHQEHH 347 HR +H + H+H Q H P HQQ HQ HH Sbjct: 7 HRHMHSPSSQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHH 49 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/48 (33%), Positives = 21/48 (43%) Frame = +3 Query: 207 TPWKVQNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHV 350 +P Q+ + + Q HHQH QQ H HQQ Q+H V Sbjct: 12 SPSSQQHEHQQHQQYQQPPQHHQHYEAPQHQQQHQHHHHQQQQQQHPV 59
>RS10B_ARATH (Q9FFS8) 40S ribosomal protein S10-2| Length = 180 Score = 31.6 bits (70), Expect = 1.7 Identities = 18/46 (39%), Positives = 20/46 (43%) Frame = -3 Query: 429 GDRPRGPPRFEXXXXXXXXXXXXXXXXXXXXXDFAGEKGGAPADYQ 292 GDRPRGPPR + G+K GAPADYQ Sbjct: 107 GDRPRGPPRGDGERRFGDRDGYRGGPKSGGEY---GDKAGAPADYQ 149
>ZEST_DROVI (Q24762) Regulatory protein zeste| Length = 618 Score = 31.6 bits (70), Expect = 1.7 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +1 Query: 346 TWASSVTIPVTIPRPVTLKTRRTPGAVTRVGQSRRG 453 T ++ ++PVT+P PVT+ P AV+ V S G Sbjct: 479 TVTAATSVPVTVPVPVTVPVTAAPAAVSNVSVSGAG 514
>DTX_DROME (Q23985) Protein deltex| Length = 738 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/44 (31%), Positives = 19/44 (43%) Frame = +3 Query: 249 HGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHH 380 H + HQH + QQ H QQ HQ+ + +H HH Sbjct: 259 HQVQQQQHQHQHQQQQQQQHHHQHQQQQHQQQQQHQMQHHQIHH 302 Score = 30.4 bits (67), Expect = 3.7 Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 5/89 (5%) Frame = +3 Query: 96 SSRCSQNSNINRLDSTQRLHWI*-----RPVGCSHLLKCSFFTPWKVQNRTCHRRLHGQR 260 +S SQ + + +L T+ LH + P+ SH ++ + Q++ H++ Q+ Sbjct: 225 ASVSSQYNTLPKLGDTKSLHRVPMTRQQHPLPTSHQVQ-------QQQHQHQHQQQQ-QQ 276 Query: 261 AWHHQHP*KLAGSQQELHPSHQQNHQEHH 347 HHQH QQ+ H QQ+ +HH Sbjct: 277 QHHHQH-------QQQQHQQQQQHQMQHH 298
>YJI3_YEAST (P47030) Hypothetical 68.8 kDa protein in EXO70-ARP4 intergenic| region Length = 604 Score = 30.8 bits (68), Expect = 2.9 Identities = 14/36 (38%), Positives = 18/36 (50%) Frame = +3 Query: 321 HQQNHQEHHVGLLCNHPCHHT*ACHPQNEEDPWGGH 428 H +HQ H+ H HHT + H NE+ PW H Sbjct: 399 HHHHHQLHNPNSHHLHTHHHT-SSHKFNEDKPWKSH 433
>CLOCK_DROME (O61735) Circadian locomoter output cycles protein kaput (dCLOCK)| (dPAS1) Length = 1027 Score = 30.4 bits (67), Expect = 3.7 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 2/45 (4%) Frame = +3 Query: 225 NRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQ--EHHVG 353 +R HR H ++ HH + +QQ+ H HQQ Q +H VG Sbjct: 535 HREHHRENHHNQSHHHMQQQQQHQNQQQQHQQHQQLQQQLQHTVG 579
>SOS_DROME (P26675) Protein son of sevenless| Length = 1596 Score = 30.0 bits (66), Expect = 4.9 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = +3 Query: 300 QQELHPSHQQNHQEHHVGLLCNHPCHH 380 QQ+ HP+ H +HH L +HP H Sbjct: 1515 QQQTHPAIYSQHHQHHATHLPHHPHQH 1541
>PNT1_DROME (P51022) ETS-like protein pointed, isoform P1 (D-ETS-2)| Length = 623 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/43 (37%), Positives = 17/43 (39%), Gaps = 2/43 (4%) Frame = +3 Query: 249 HGQRAWHHQHP*KLAGSQQELHPSH--QQNHQEHHVGLLCNHP 371 H HH HP Q LH H QQ Q+ LL HP Sbjct: 76 HHHHHHHHSHPHHQLAQQTGLHSHHTMQQQLQQQQQSLLLQHP 118
>GTR8_HUMAN (Q9NY64) Solute carrier family 2, facilitated glucose transporter| member 8 (Glucose transporter type 8) (Glucose transporter type X1) Length = 477 Score = 30.0 bits (66), Expect = 4.9 Identities = 16/34 (47%), Positives = 18/34 (52%) Frame = +3 Query: 405 EEDPWGGHPGGPEPKGRDGGLADFLRVLGTISDG 506 E P G PGG P+GR LA F LG +S G Sbjct: 8 ETQPLLGPPGGSAPRGRRVFLAAFAAALGPLSFG 41
>HR4_DROME (Q9W539) Hormone receptor 4 (dHR4)| Length = 1518 Score = 29.6 bits (65), Expect = 6.4 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%) Frame = +3 Query: 222 QNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPS----HQQNHQEHH 347 Q + ++ H Q+ H QH QQ+LH H Q HQ HH Sbjct: 1032 QQQAAAQQQHQQQQQHQQHQ---QHQQQQLHSPLHHHHHQGHQSHH 1074
>SRY_MOUSE (Q05738) Sex-determining region Y protein (Testis-determining| factor) Length = 395 Score = 29.6 bits (65), Expect = 6.4 Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 2/50 (4%) Frame = +3 Query: 237 HRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQ--EHHVGLLCNHPCHH 380 H + Q HHQ + QQ+ H HQQ Q +HH H HH Sbjct: 158 HHQQQQQFYDHHQQQQQQQQQQQQFHDHHQQKQQFHDHHQQQQQFHDHHH 207
>GBF_DICDI (P36417) G-box-binding factor (GBF)| Length = 708 Score = 29.3 bits (64), Expect = 8.3 Identities = 13/41 (31%), Positives = 18/41 (43%) Frame = +3 Query: 222 QNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEH 344 Q + ++ H Q+ HHQH Q HQ N Q+H Sbjct: 208 QQQQQQQQQHHQQQQHHQHSQPQQQHQHNQQQQHQHNQQQH 248
>FSH_DROME (P13709) Homeotic protein female sterile (Fragile-chorion membrane| protein) Length = 2038 Score = 29.3 bits (64), Expect = 8.3 Identities = 14/53 (26%), Positives = 24/53 (45%) Frame = +3 Query: 222 QNRTCHRRLHGQRAWHHQHP*KLAGSQQELHPSHQQNHQEHHVGLLCNHPCHH 380 Q + H++ + HHQ + +QQ+L QQ Q+ H+ + HH Sbjct: 1515 QQQQTHQQQQQHQQQHHQQQQQQQLTQQQLQQQQQQQQQQQHLQQQQHQQQHH 1567 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 74,912,249 Number of Sequences: 219361 Number of extensions: 1496928 Number of successful extensions: 5346 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 4564 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5169 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4815021120 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
