ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbags5a24 |
|---|---|
| Clone Library Name | barley_pub |
>APMAP_MOUSE (Q9D7N9) Adipocyte plasma membrane-associated protein (Protein| DD16) Length = 415 Score = 57.8 bits (138), Expect = 3e-08 Identities = 39/121 (32%), Positives = 61/121 (50%), Gaps = 5/121 (4%) Frame = -1 Query: 609 GTVDLFAI-LPGFPDNVRTNDKGEFWVAIHCRRS----AYARLLSHRVQLRKFLLSLPIP 445 G D+F +PGFPDN+R + G +WVA R+ + LS + +++ + + Sbjct: 291 GGADMFVENMPGFPDNIRPSSSGGYWVAAATIRANPGFSMLDFLSDKPFIKRMIFKM--- 347 Query: 444 AKYHYLMQIGGNLHALIIKYSPEGEVLDILEDTKGQVVRAVSEVEEKDGKLWIGSVLMPF 265 +M+ ++L+++ S G L D GQVV VSE E DG L++GS PF Sbjct: 348 FSQETVMKFVPR-YSLVLEVSDSGAFRRSLHDPDGQVVTYVSEAHEHDGYLYLGSFRSPF 406 Query: 264 I 262 I Sbjct: 407 I 407
>APMAP_HUMAN (Q9HDC9) Adipocyte plasma membrane-associated protein (BSCv| protein) Length = 416 Score = 56.6 bits (135), Expect = 6e-08 Identities = 38/121 (31%), Positives = 59/121 (48%), Gaps = 5/121 (4%) Frame = -1 Query: 609 GTVDLFAI-LPGFPDNVRTNDKGEFWVAIHCRRS----AYARLLSHRVQLRKFLLSLPIP 445 G DLF +PGFPDN+R + G +WV + R + LS R +++ + L Sbjct: 292 GGADLFVENMPGFPDNIRPSSSGGYWVGMSTIRPNPGFSMLDFLSERPWIKRMIFKL--- 348 Query: 444 AKYHYLMQIGGNLHALIIKYSPEGEVLDILEDTKGQVVRAVSEVEEKDGKLWIGSVLMPF 265 +M+ ++L+++ S G L D G V +SEV E DG L++GS PF Sbjct: 349 FSQETVMKFVPR-YSLVLELSDSGAFRRSLHDPDGLVATYISEVHEHDGHLYLGSFRSPF 407 Query: 264 I 262 + Sbjct: 408 L 408
>STS3_ARATH (P92976) Strictosidine synthase 3 precursor (EC 4.3.3.2) (SS-3)| Length = 329 Score = 33.5 bits (75), Expect = 0.51 Identities = 34/123 (27%), Positives = 47/123 (38%), Gaps = 3/123 (2%) Frame = -1 Query: 615 KAGTVDLFAILPGFPDNV-RTNDKGEFWVAIHCRRSAYARLLSHRVQLRKFLLSLPIPAK 439 KAGT + F PDN+ R G FWVA + Sbjct: 237 KAGTSEDFTNSVSNPDNIKRIGSTGNFWVASVVNSAT----------------------- 273 Query: 438 YHYLMQIGGNLHALIIKYSPEGEVLDI--LEDTKGQVVRAVSEVEEKDGKLWIGSVLMPF 265 G + +K S G+VL L+D G + VSEV E G+L+IG++ PF Sbjct: 274 --------GPTNPSAVKVSSAGKVLQTIPLKDKFGDTL--VSEVNEYKGQLYIGALFGPF 323 Query: 264 IAV 256 + Sbjct: 324 AGI 326
>STS1_ARATH (P94111) Strictosidine synthase 1 precursor (EC 4.3.3.2) (SS-1)| Length = 335 Score = 32.3 bits (72), Expect = 1.1 Identities = 34/130 (26%), Positives = 51/130 (39%), Gaps = 3/130 (2%) Frame = -1 Query: 615 KAGTVDLFAILPGFPDNV-RTNDKGEFWVAIHCRRSAYARLLSHRVQLRKFLLSLPIPAK 439 KAG+ + F PDN+ R G FWVA + + +P Sbjct: 235 KAGSSEDFTNSVSNPDNIKRIGSTGNFWVA-------------------SVVNKIIVPT- 274 Query: 438 YHYLMQIGGNLHALIIKYSPEGEVLDI--LEDTKGQVVRAVSEVEEKDGKLWIGSVLMPF 265 + +K + GEVL L+D G + +SEV E +G L+IG++ PF Sbjct: 275 -----------NPSAVKVNSNGEVLQTIPLKDKFGDTL--LSEVNEFEGNLYIGTLTGPF 321 Query: 264 IAVFDYAKES 235 + K S Sbjct: 322 AGILKLEKGS 331
>APBA3_HUMAN (O96018) Amyloid beta A4 precursor protein-binding family A member| 3 (Neuron-specific X11L2 protein) (Neuronal Munc18-1-interacting protein 3) (Mint-3) (Adapter protein X11gamma) Length = 575 Score = 32.0 bits (71), Expect = 1.5 Identities = 21/58 (36%), Positives = 27/58 (46%), Gaps = 5/58 (8%) Frame = -3 Query: 586 PAWVPGQREDQRQGRILGSNPLPAQRIRPAL---ESPRAAE--EVLAQPPDPRQVPLP 428 P WV G +Q R S+P P P + E P A+ E LA P P++VP P Sbjct: 152 PEWVEGASAEQEGSRSSSSSPEPWLETVPLVTPEEPPAGAQSPETLASYPAPQEVPGP 209
>MURE_COREF (Q8FNT5) UDP-N-acetylmuramoylalanyl-D-glutamate--2,| 6-diaminopimelate ligase (EC 6.3.2.13) (UDP-N-acetylmuramyl-tripeptide synthetase) (Meso-diaminopimelate-adding enzyme) (UDP-MurNAc-tripeptide synthetase) Length = 526 Score = 30.8 bits (68), Expect = 3.3 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%) Frame = +1 Query: 343 FSVLQDVEH--LALGAVLDDQRVQVAADLHQVVVLGGDREAEQELP 474 F + D H A+ AVLD R Q+ L V+ GGDR+A + P Sbjct: 370 FLAVVDYAHKPAAVAAVLDTLRTQIDGRLGVVIGAGGDRDATKRAP 415
>FOXQ1_HUMAN (Q9C009) Forkhead box protein Q1 (Hepatocyte nuclear factor 3| forkhead homolog 1) (HNF-3/forkhead-like protein 1) (HFH-1) Length = 403 Score = 30.4 bits (67), Expect = 4.3 Identities = 17/47 (36%), Positives = 20/47 (42%) Frame = -3 Query: 610 RNRRSLRHPAWVPGQREDQRQGRILGSNPLPAQRIRPALESPRAAEE 470 R R S R P PG R ++ G P PA P + SP EE Sbjct: 213 RKRLSHRAPVPAPGLRPEEAPGLPAAPPPAPAAPASPRMRSPARQEE 259
>NAC2_CHLRE (Q9LEM8) PsbD mRNA maturation factor Nac2, chloroplast precursor| Length = 1385 Score = 30.4 bits (67), Expect = 4.3 Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%) Frame = -3 Query: 547 GRILGSNPLPAQRIRPALESPRAAEEVLAQPP-DPRQVPLPDAD 419 G LGS PLP +R+ E +A PP D + P+PDAD Sbjct: 1340 GADLGSGPLPRRRLEDQDADYYEEPESMALPPLDAVRRPMPDAD 1383
>ATG4_YARLI (Q6CH28) Probable cysteine protease ATG4 (EC 3.4.22.-)| (Autophagy-related protein 4) Length = 545 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/80 (23%), Positives = 39/80 (48%), Gaps = 3/80 (3%) Frame = +1 Query: 265 EGHENGSYPKLAILLLHLAYGSHHLPFSVLQDVEHLALGAVLDDQRVQVAADLHQVVVLG 444 +G S K + ++H+ H++P S ++ E++++G DD V V +V + Sbjct: 374 KGSLTASKEKTSSQIVHIHPSRHNIP-SFDEEDEYVSIGGASDDDFVDVTKRARKVAAMT 432 Query: 445 GDREAEQELPQL---HAVTQ 495 G+ + + P + H VT+ Sbjct: 433 GNTGSGRSSPSILDSHLVTE 452
>CYL1_BOVIN (P35662) Cylicin-1 (Cylicin I) (Multiple-band polypeptide I)| Length = 667 Score = 30.0 bits (66), Expect = 5.7 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 11/56 (19%) Frame = -3 Query: 556 QRQGRILGSNPLPAQRIRPALE-------SPRAAEEVLAQ----PPDPRQVPLPDA 422 + +G+ +G+ +P R RP L SPR Q PP PR PLP+A Sbjct: 605 KEKGKKIGTGRVPPSRERPPLPPCEPILPSPRVKRLCRCQMPPPPPKPRYAPLPEA 660
>CNGB1_BOVIN (Q28181) 240 kDa protein of rod photoreceptor CNG-channel| [Contains: Glutamic acid-rich protein (GARP); Cyclic-nucleotide-gated cation channel 4 (CNG channel 4) (CNG-4) (Cyclic nucleotide-gated cation channel modulatory subunit)] Length = 1394 Score = 30.0 bits (66), Expect = 5.7 Identities = 13/49 (26%), Positives = 24/49 (48%) Frame = -3 Query: 571 GQREDQRQGRILGSNPLPAQRIRPALESPRAAEEVLAQPPDPRQVPLPD 425 G R++ + P PA I+P L++ + PP+P + P+P+ Sbjct: 188 GWRDEPTDAALGPEPPGPALEIKPMLQAQESPSLPAPGPPEPEEEPIPE 236
>ISY1_USTMA (Q4PEZ0) Pre-mRNA-splicing factor ISY1| Length = 351 Score = 29.6 bits (65), Expect = 7.4 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 1/65 (1%) Frame = -3 Query: 616 EGRNRRSLRHPAWVPGQREDQRQGR-ILGSNPLPAQRIRPALESPRAAEEVLAQPPDPRQ 440 E ++R+ + P +R QG I ++ A+ R LE P A+ + P D + Sbjct: 264 ESTSKRAPQDELQTPAKRHKNEQGHPIPPTHHADAEPSRTTLEPPSVADYSIFSPEDLQP 323 Query: 439 VPLPD 425 P+PD Sbjct: 324 PPIPD 328
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 29.6 bits (65), Expect = 7.4 Identities = 21/75 (28%), Positives = 30/75 (40%), Gaps = 5/75 (6%) Frame = -3 Query: 613 GRNRRSLRHPAWVPGQREDQRQGRILGS-----NPLPAQRIRPALESPRAAEEVLAQPPD 449 GR RR + P R+ Q++ G +P P +R R +P PP Sbjct: 518 GRRRRHSPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPP 577 Query: 448 PRQVPLPDADRRQPA 404 R+ P P RR P+ Sbjct: 578 RRRTPSPPPRRRSPS 592
>YR602_MIMIV (Q5UP61) Putative ankyrin repeat protein R602| Length = 304 Score = 29.3 bits (64), Expect = 9.7 Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 10/111 (9%) Frame = +1 Query: 229 LPRFLGIVKDGNEGHENGSYPKLAILLLHLAYGSHHLPFSVLQDVEHLALGAVLD----- 393 L F I+K N+ + +L +L++AY +HH SV ++ + LD Sbjct: 62 LDGFYQIIKHHNDIFRDNY--RLIRYILYIAYQNHHQDCSVYYEMIKYLIDYGLDITFND 119 Query: 394 DQRVQVAADLHQ-----VVVLGGDREAEQELPQLHAVTQEPGVCAAPAMDC 531 + +++A+ H+ V+ GGD A+ E P A C +DC Sbjct: 120 NFAIKLASLCHENILKLVIDNGGDVHADNEFPICLAANHGRLSCVKLLVDC 170
>DYR_ENTAE (P31074) Dihydrofolate reductase (EC 1.5.1.3)| Length = 159 Score = 29.3 bits (64), Expect = 9.7 Identities = 11/30 (36%), Positives = 18/30 (60%) Frame = +1 Query: 394 DQRVQVAADLHQVVVLGGDREAEQELPQLH 483 D+ + D +++V+GG R EQ LP+ H Sbjct: 79 DEAIAACGDAEEIMVIGGGRVYEQFLPKAH 108
>SULF1_RAT (Q8VI60) Extracellular sulfatase Sulf-1 precursor (EC 3.1.6.-)| (Sulfatase FP) (RSulfFP1) Length = 870 Score = 29.3 bits (64), Expect = 9.7 Identities = 25/76 (32%), Positives = 37/76 (48%), Gaps = 1/76 (1%) Frame = -1 Query: 525 HCRRSAYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALIIKYSPEGEVLDI-LED 349 HCR S Y S R + R+FL + P KY +L +++ EGE+ DI LE+ Sbjct: 505 HCRESGYRPSRSQRKKERQFLRNQGTP-KYKPRFVHTRQTRSLSVEF--EGEIYDINLEE 561 Query: 348 TKGQVVRAVSEVEEKD 301 + QV+ S + D Sbjct: 562 EELQVLPPRSVAKRHD 577
>SULF1_MOUSE (Q8K007) Extracellular sulfatase Sulf-1 precursor (EC 3.1.6.-)| (MSulf-1) Length = 870 Score = 29.3 bits (64), Expect = 9.7 Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%) Frame = -1 Query: 525 HCRRSAYARLLSHRVQLRKFLLSLPIPAKYHYLMQIGGNLHALIIKYSPEGEVLDI-LED 349 HCR S Y S R R+FL + P KY +L +++ EGE+ DI LE+ Sbjct: 505 HCRDSGYRSSRSQRKNQRQFLRNKGTP-KYKPRFVHTRQTRSLSVEF--EGEIYDINLEE 561 Query: 348 TKGQVV--RAVSEVEEKDGKLWIG 283 + QV+ R++++ ++ + +IG Sbjct: 562 EELQVLPPRSIAKRHDEGHQGFIG 585
>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)| Length = 268 Score = 29.3 bits (64), Expect = 9.7 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%) Frame = -3 Query: 526 PLPAQRIRPALESPRAAEEVLAQP-PDPRQVPLPDADRRQPA 404 P P +R P+ SP + P P PR P+P +R PA Sbjct: 152 PHPPRRSLPSPPSPSPSPSPSPSPSPSPRSTPIPHPRKRSPA 193 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 80,344,845 Number of Sequences: 219361 Number of extensions: 1570345 Number of successful extensions: 5492 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 5185 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5476 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5596027262 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
