ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5a23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|BT009538.1| Triticum aestivum clone wr1.pk0144.b10:fis, full ... 137 2e-29
2dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
3dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic D... 42 0.76
4ref|XM_640445.1| Dictyostelium discoideum ATP-specific succinyl-... 40 3.0
5gb|AC115594.2| Dictyostelium discoideum chromosome 2 map 4071862... 40 3.0
6gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1... 40 3.0
7gb|AC165235.11| Mus musculus chromosome 8, clone RP23-332G19, co... 40 3.0

>gb|BT009538.1| Triticum aestivum clone wr1.pk0144.b10:fis, full insert mRNA
           sequence
          Length = 2748

 Score =  137 bits (69), Expect = 2e-29
 Identities = 121/142 (85%), Gaps = 1/142 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caacatattggacttctagagcagttgaa-tctcgcaagaaatctttgtattgataactc 59
           ||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||| ||
Sbjct: 743 caacatattggacttctggaacagttgaactctggcaagaaatctttgtattgataattc 684

                                                                       
Query: 60  attcaaagcagcgccataaatccgacancngngaaatttgatacnnnnnnnnnttantct 119
           |||||||||||||||||||| |||||| | | ||||||||||||         ||| |||
Sbjct: 683 attcaaagcagcgccataaacccgacaacagggaaatttgataccattacacattagtct 624

                                 
Query: 120 atgcagnctggatcactnctta 141
           |||||| |||||||||| ||||
Sbjct: 623 atgcagcctggatcactcctta 602



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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 20       agcagttgaatctcgcaagaa 40
                |||||||||||||||||||||
Sbjct: 29207919 agcagttgaatctcgcaagaa 29207899



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>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
             clone:OJ1215_E11
          Length = 105301

 Score = 42.1 bits (21), Expect = 0.76
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 20    agcagttgaatctcgcaagaa 40
             |||||||||||||||||||||
Sbjct: 75206 agcagttgaatctcgcaagaa 75186



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>ref|XM_640445.1| Dictyostelium discoideum ATP-specific succinyl-CoA synthetase subunit
            beta (DDB0231357), partial mRNA
          Length = 1338

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 49   attgataactcattcaaagcagcg 72
            ||||||||||| ||||||||||||
Sbjct: 1145 attgataactccttcaaagcagcg 1122



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>gb|AC115594.2| Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4,
             complete sequence
          Length = 29143

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 49    attgataactcattcaaagcagcg 72
             ||||||||||| ||||||||||||
Sbjct: 19246 attgataactccttcaaagcagcg 19223



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>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome
          Length = 1751080

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 46     tgtattgataactcattcaa 65
              ||||||||||||||||||||
Sbjct: 241689 tgtattgataactcattcaa 241670



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>gb|AC165235.11| Mus musculus chromosome 8, clone RP23-332G19, complete sequence
          Length = 220008

 Score = 40.1 bits (20), Expect = 3.0
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 39    aaatctttgtattgataactcatt 62
             ||||||||||||| ||||||||||
Sbjct: 62554 aaatctttgtatttataactcatt 62577


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 648,957
Number of Sequences: 3902068
Number of extensions: 648957
Number of successful extensions: 9682
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9666
Number of HSP's gapped (non-prelim): 15
length of query: 234
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 212
effective length of database: 17,147,199,772
effective search space: 3635206351664
effective search space used: 3635206351664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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