| Clone Name | rbags5a23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|BT009538.1| Triticum aestivum clone wr1.pk0144.b10:fis, full insert mRNA sequence Length = 2748 Score = 137 bits (69), Expect = 2e-29 Identities = 121/142 (85%), Gaps = 1/142 (0%) Strand = Plus / Minus Query: 1 caacatattggacttctagagcagttgaa-tctcgcaagaaatctttgtattgataactc 59 ||||||||||||||||| || |||||||| ||| ||||||||||||||||||||||| || Sbjct: 743 caacatattggacttctggaacagttgaactctggcaagaaatctttgtattgataattc 684 Query: 60 attcaaagcagcgccataaatccgacancngngaaatttgatacnnnnnnnnnttantct 119 |||||||||||||||||||| |||||| | | |||||||||||| ||| ||| Sbjct: 683 attcaaagcagcgccataaacccgacaacagggaaatttgataccattacacattagtct 624 Query: 120 atgcagnctggatcactnctta 141 |||||| |||||||||| |||| Sbjct: 623 atgcagcctggatcactcctta 602
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 agcagttgaatctcgcaagaa 40 ||||||||||||||||||||| Sbjct: 29207919 agcagttgaatctcgcaagaa 29207899
>dbj|AP004324.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OJ1215_E11 Length = 105301 Score = 42.1 bits (21), Expect = 0.76 Identities = 21/21 (100%) Strand = Plus / Minus Query: 20 agcagttgaatctcgcaagaa 40 ||||||||||||||||||||| Sbjct: 75206 agcagttgaatctcgcaagaa 75186
>ref|XM_640445.1| Dictyostelium discoideum ATP-specific succinyl-CoA synthetase subunit beta (DDB0231357), partial mRNA Length = 1338 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 attgataactcattcaaagcagcg 72 ||||||||||| |||||||||||| Sbjct: 1145 attgataactccttcaaagcagcg 1122
>gb|AC115594.2| Dictyostelium discoideum chromosome 2 map 4071862-4101005 strain AX4, complete sequence Length = 29143 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 49 attgataactcattcaaagcagcg 72 ||||||||||| |||||||||||| Sbjct: 19246 attgataactccttcaaagcagcg 19223
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 40.1 bits (20), Expect = 3.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 46 tgtattgataactcattcaa 65 |||||||||||||||||||| Sbjct: 241689 tgtattgataactcattcaa 241670
>gb|AC165235.11| Mus musculus chromosome 8, clone RP23-332G19, complete sequence Length = 220008 Score = 40.1 bits (20), Expect = 3.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 39 aaatctttgtattgataactcatt 62 ||||||||||||| |||||||||| Sbjct: 62554 aaatctttgtatttataactcatt 62577 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 648,957 Number of Sequences: 3902068 Number of extensions: 648957 Number of successful extensions: 9682 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 7 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9666 Number of HSP's gapped (non-prelim): 15 length of query: 234 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 212 effective length of database: 17,147,199,772 effective search space: 3635206351664 effective search space used: 3635206351664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)