ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY109127.1| Zea mays PCO138649 mRNA sequence 103 7e-19
2ref|NM_195463.1| Oryza sativa (japonica cultivar-group) putative... 92 3e-15
3gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome... 92 3e-15
4gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 geno... 92 3e-15
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
6dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
7dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic D... 92 3e-15
8gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 92 3e-15
9gb|BT018979.1| Zea mays clone Contig415.F mRNA sequence 90 1e-14
10gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 62 2e-06
11gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare str... 62 2e-06
12dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 62 2e-06
13ref|NM_117746.3| Arabidopsis thaliana carbohydrate transporter/ ... 48 0.036
14emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA ... 48 0.036
15emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, ... 48 0.036
16dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
17emb|BX828041.1|CNS0A2WR Arabidopsis thaliana Full-length cDNA Co... 48 0.036
18gb|BT004139.1| Arabidopsis thaliana clone RAFL15-36-B07 (R50004)... 48 0.036
19dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
20dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.036
21gb|AC154234.1| Mus musculus BAC clone RP24-345H5 from 16, comple... 46 0.14
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 42 2.2
23gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 ... 42 2.2
24gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromoso... 42 2.2
25emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4,... 42 2.2
26ref|NM_129853.3| Arabidopsis thaliana unknown protein AT2G42920 ... 40 8.9
27ref|XM_530924.1| PREDICTED: Pan troglodytes LOC462664 (LOC462664... 40 8.9
28gb|AC103672.7| Mus musculus chromosome 15, clone RP24-351G3, com... 40 8.9
29gb|AC148089.8| Mus musculus chromosome 8, clone RP24-366L10, com... 40 8.9
30gb|AF321298.1| Walrus calicivirus non-structural polyprotein, ca... 40 8.9
31gb|BC043639.1| Xenopus laevis similar to enhancer of split relat... 40 8.9
32emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chro... 40 8.9
33emb|AL157828.14| Human DNA sequence from clone RP11-214I20 on ch... 40 8.9
34emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A... 40 8.9
35emb|AL035690.10|HS202I21 Human DNA sequence from clone RP1-202I2... 40 8.9
36gb|AC159618.2| Mus musculus BAC clone RP24-472P16 from chromosom... 40 8.9
37gb|BC022007.2| Homo sapiens chromosome 6 open reading frame 64, ... 40 8.9
38gb|AC106726.3| Homo sapiens 3 BAC RP11-450I19 (Roswell Park Canc... 40 8.9
39gb|AC131068.11| Mus musculus chromosome 15, clone RP23-383I12, c... 40 8.9
40emb|CR627244.1| Homo sapiens mRNA; cDNA DKFZp781B2319 (from clon... 40 8.9
41dbj|AK125622.1| Homo sapiens cDNA FLJ43634 fis, clone SPLEN2036712 40 8.9
42dbj|AK124992.1| Homo sapiens cDNA FLJ43002 fis, clone BRTHA2013054 40 8.9
43emb|CR621024.1| full-length cDNA clone CS0DL004YL07 of B cells (... 40 8.9
44emb|CR593115.1| full-length cDNA clone CS0DI059YE11 of Placenta ... 40 8.9
45dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102 40 8.9
46gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map... 40 8.9
47gb|AC006580.4| Arabidopsis thaliana chromosome 2 clone F23E6 map... 40 8.9
48gb|AC023122.9| Homo sapiens BAC clone RP11-297L21 from 3, comple... 40 8.9
49gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome 40 8.9
50emb|BX511107.3| Zebrafish DNA sequence from clone CH211-117I13 i... 40 8.9
51gb|AF383157.1|AF383157 Xenopus laevis enhancer of split related ... 40 8.9
52dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
53emb|BX539308.3| Zebrafish DNA sequence from clone DKEYP-84C8 in ... 40 8.9
54gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17... 40 8.9
55gb|AC127894.6| Homo sapiens 12 BAC RP11-324P9 (Roswell Park Canc... 40 8.9
56dbj|AP004113.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
57dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic D... 40 8.9
58gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complet... 40 8.9
59emb|CT030246.7| Mouse DNA sequence from clone RP24-400A10 on chr... 40 8.9
60emb|AL136839.1|HSM801807 Homo sapiens mRNA; cDNA DKFZp434H012 (f... 40 8.9 
>gb|AY109127.1| Zea mays PCO138649 mRNA sequence
          Length = 932

 Score =  103 bits (52), Expect = 7e-19
 Identities = 145/176 (82%)
 Strand = Plus / Minus

                                                                       
Query: 468 tcacacacctctgttggctggaacaagtttgagaagctttgccagatcatatgagttgaa 527
           |||| |||||||||| ||||||| ||| |||| ||||||||| ||||||||||| |||||
Sbjct: 583 tcacgcacctctgtttgctggaataagcttgacaagctttgcaagatcatatgacttgaa 524

                                                                       
Query: 528 gtcccttccgaaacataagctgaggtccaatggagtttttccaccattggttcttcttgt 587
            |||||||| || ||||  || || ||||  | |||  | ||| | ||||||||||||||
Sbjct: 523 atcccttccaaagcatagacttagatccagcgcagtcctcccatccttggttcttcttgt 464

                                                                   
Query: 588 ctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactctgta 643
           || ||| ||||||||||||||||| | ||| | |||||| | ||| ||||||||||
Sbjct: 463 cttatccgcaccattgacaagcaagaccttagctatatctctattcctactctgta 408
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>ref|NM_195463.1| Oryza sativa (japonica cultivar-group) putative ankyrin repeat
           protein (OJ1004_F02.5), mRNA
          Length = 447

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                       
Query: 578 ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 637
           |||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 349 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 290

                 
Query: 638 tctgta 643
           ||||||
Sbjct: 289 tctgta 284
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>gb|AC092387.6| Oryza sativa (japonica cultivar-group) chromosome 10 clone OJ1004_F02
             map C8, complete sequence
          Length = 116304

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                         
Query: 578   ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 637
             |||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 17042 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 17101

                   
Query: 638   tctgta 643
             ||||||
Sbjct: 17102 tctgta 17107
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>gb|AC099325.4| Oryza sativa chromosome 10 BAC OSJNBb0048O22 genomic sequence,
            complete sequence
          Length = 134825

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Minus

                                                                        
Query: 578  ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 637
            |||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 6384 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 6325

                  
Query: 638  tctgta 643
            ||||||
Sbjct: 6324 tctgta 6319
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
               sequence
          Length = 22685906

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                           
Query: 578     ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 637
               |||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 7160424 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 7160483

                     
Query: 638     tctgta 643
               ||||||
Sbjct: 7160484 tctgta 7160489
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
               sequence
          Length = 30731886

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                           
Query: 574     ttggttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgattt 633
               ||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | ||||
Sbjct: 7132310 ttggttcttctcgtcttatctgcaccattgacaagcaatatctttgctatatctctattt 7132369

                         
Query: 634     ctactctgta 643
               ||||||||||
Sbjct: 7132370 ctactctgta 7132379



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                           
Query: 487     ggaacaagtttgagaagctttgccagatcatatgagttgaagtcccttccgaaacataag 546
               ||||||||||||| ||||||||||| |||||| || ||||| || ||||| ||||| |||
Sbjct: 7131956 ggaacaagtttgacaagctttgccaaatcataagacttgaaatctcttccaaaacacaag 7132015

                 
Query: 547     ct 548
               ||
Sbjct: 7132016 ct 7132017
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>dbj|AP004995.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
            clone:OSJNBa0068B06
          Length = 143712

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 64/70 (91%)
 Strand = Plus / Plus

                                                                        
Query: 574  ttggttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgattt 633
            ||||||||||| |||| ||| ||||||||||||||||||||||||| |||||| | ||||
Sbjct: 9721 ttggttcttctcgtcttatctgcaccattgacaagcaatatctttgctatatctctattt 9780

                      
Query: 634  ctactctgta 643
            ||||||||||
Sbjct: 9781 ctactctgta 9790



 Score = 60.0 bits (30), Expect = 1e-05
 Identities = 54/62 (87%)
 Strand = Plus / Plus

                                                                        
Query: 487  ggaacaagtttgagaagctttgccagatcatatgagttgaagtcccttccgaaacataag 546
            ||||||||||||| ||||||||||| |||||| || ||||| || ||||| ||||| |||
Sbjct: 9367 ggaacaagtttgacaagctttgccaaatcataagacttgaaatctcttccaaaacacaag 9426

              
Query: 547  ct 548
            ||
Sbjct: 9427 ct 9428
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 91.7 bits (46), Expect = 3e-15
 Identities = 61/66 (92%)
 Strand = Plus / Plus

                                                                           
Query: 578     ttcttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctac 637
               |||||||||||| ||| ||||||||||||||||||||| |||||||||| | ||||||||
Sbjct: 7163720 ttcttcttgtctcatctgcaccattgacaagcaatatcattgttatatctctatttctac 7163779

                     
Query: 638     tctgta 643
               ||||||
Sbjct: 7163780 tctgta 7163785
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>gb|BT018979.1| Zea mays clone Contig415.F mRNA sequence
          Length = 1356

 Score = 89.7 bits (45), Expect = 1e-14
 Identities = 138/169 (81%)
 Strand = Plus / Minus

                                                                        
Query: 475  cctctgttggctggaacaagtttgagaagctttgccagatcatatgagttgaagtccctt 534
            ||||| || ||||||| ||| |||| ||||||||| ||||||||||| ||||| ||||||
Sbjct: 1013 cctctatttgctggaataagcttgacaagctttgcaagatcatatgacttgaaatccctt 954

                                                                        
Query: 535  ccgaaacataagctgaggtccaatggagtttttccaccattggttcttcttgtctgatcg 594
            || || ||||  || || ||||  | |||  | ||| | |||||||||||||||| ||| 
Sbjct: 953  ccaaagcatagacttagatccagcgcagtcctcccatccttggttcttcttgtcttatcc 894

                                                             
Query: 595  gcaccattgacaagcaatatctttgttatatcccgatttctactctgta 643
            ||||||||||||||||| | ||| | |||||| | ||| ||||||||||
Sbjct: 893  gcaccattgacaagcaagaccttagctatatctctattcctactctgta 845
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 581      ttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactct 640
                ||||||||| ||| ||||||||| ||| ||||||| ||| |||||| | |||||||||||
Sbjct: 15073413 ttcttgtcttatccgcaccattggcaaacaatatcattgctatatctctatttctactct 15073354

                   
Query: 641      gta 643
                |||
Sbjct: 15073353 gta 15073351
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>gb|AC091733.3| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0048F08, from chromosome 3, complete sequence
          Length = 155790

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Plus

                                                                         
Query: 581   ttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactct 640
             ||||||||| ||| ||||||||| ||| ||||||| ||| |||||| | |||||||||||
Sbjct: 81360 ttcttgtcttatccgcaccattggcaaacaatatcattgctatatctctatttctactct 81419

                
Query: 641   gta 643
             |||
Sbjct: 81420 gta 81422
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                            
Query: 581      ttcttgtctgatcggcaccattgacaagcaatatctttgttatatcccgatttctactct 640
                ||||||||| ||| ||||||||| ||| ||||||| ||| |||||| | |||||||||||
Sbjct: 15067947 ttcttgtcttatccgcaccattggcaaacaatatcattgctatatctctatttctactct 15067888

                   
Query: 641      gta 643
                |||
Sbjct: 15067887 gta 15067885
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>ref|NM_117746.3| Arabidopsis thaliana carbohydrate transporter/ sugar porter
           AT4G16480 mRNA, complete cds
          Length = 1996

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 566 ttccaccattggttcttcttgtctgatc 593
           ||||||||||| ||||||||||||||||
Sbjct: 136 ttccaccattgtttcttcttgtctgatc 109
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>emb|Z97341.2|ATFCA6 Arabidopsis thaliana DNA chromosome 4, ESSA I FCA contig fragment No. 6
          Length = 213788

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 566   ttccaccattggttcttcttgtctgatc 593
             ||||||||||| ||||||||||||||||
Sbjct: 55755 ttccaccattgtttcttcttgtctgatc 55728
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>emb|AL161544.2|ATCHRIV44 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 44
          Length = 198735

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                         
Query: 566   ttccaccattggttcttcttgtctgatc 593
             ||||||||||| ||||||||||||||||
Sbjct: 33683 ttccaccattgtttcttcttgtctgatc 33656
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1,
              complete sequence
          Length = 43261740

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 501    aagctttgccagatcatatgagttgaagtcccttccgaaacataagct 548
              ||||||||||| |||||| || ||||| || ||||| |||||||||||
Sbjct: 434865 aagctttgccaaatcataagacttgaaatctcttccaaaacataagct 434818
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>emb|BX828041.1|CNS0A2WR Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTPGH47ZD07 of Hormone Treated Callus of strain col-0
           of Arabidopsis thaliana (thale cress)
          Length = 1955

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 566 ttccaccattggttcttcttgtctgatc 593
           ||||||||||| ||||||||||||||||
Sbjct: 136 ttccaccattgtttcttcttgtctgatc 109
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>gb|BT004139.1| Arabidopsis thaliana clone RAFL15-36-B07 (R50004) putative membrane
           transporter (At4g16480) mRNA, complete cds
          Length = 1964

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 27/28 (96%)
 Strand = Plus / Minus

                                       
Query: 566 ttccaccattggttcttcttgtctgatc 593
           ||||||||||| ||||||||||||||||
Sbjct: 88  ttccaccattgtttcttcttgtctgatc 61
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>dbj|AP002863.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0005A05
          Length = 190834

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                              
Query: 501    aagctttgccagatcatatgagttgaagtcccttccgaaacataagct 548
              ||||||||||| |||||| || ||||| || ||||| |||||||||||
Sbjct: 186703 aagctttgccaaatcataagacttgaaatctcttccaaaacataagct 186656
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>dbj|AP002845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0482C06
          Length = 182779

 Score = 48.1 bits (24), Expect = 0.036
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                             
Query: 501   aagctttgccagatcatatgagttgaagtcccttccgaaacataagct 548
             ||||||||||| |||||| || ||||| || ||||| |||||||||||
Sbjct: 75066 aagctttgccaaatcataagacttgaaatctcttccaaaacataagct 75019
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>gb|AC154234.1| Mus musculus BAC clone RP24-345H5 from 16, complete sequence
          Length = 161505

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                     
Query: 575    tggttcttcttgtctgatcggca 597
              |||||||||||||||||||||||
Sbjct: 127366 tggttcttcttgtctgatcggca 127344
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 488      gaacaagtttgagaagctttgccag 512
                ||||||||||||||| |||||||||
Sbjct: 22379366 gaacaagtttgagaaactttgccag 22379390
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>gb|AC007918.2|F28J9 Arabidopsis thaliana chromosome 1 BAC F28J9 sequence, complete sequence
          Length = 115963

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 486   tggaacaagtttgagaagctt 506
             |||||||||||||||||||||
Sbjct: 76851 tggaacaagtttgagaagctt 76831
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>gb|AC157495.2| Gallus gallus BAC clone CH261-13P20 from chromosome unknown, complete
              sequence
          Length = 228855

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 23     ttgaacaaaatacaagcacat 43
              |||||||||||||||||||||
Sbjct: 119010 ttgaacaaaatacaagcacat 118990
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>emb|AL606448.3|OSJN00013 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064H22,
              complete sequence
          Length = 147214

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 488    gaacaagtttgagaagctttgccag 512
              ||||||||||||||| |||||||||
Sbjct: 130270 gaacaagtttgagaaactttgccag 130294
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>ref|NM_129853.3| Arabidopsis thaliana unknown protein AT2G42920 mRNA, complete cds
          Length = 1687

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 214 acacaacatgtcaatgaaaa 233
           ||||||||||||||||||||
Sbjct: 358 acacaacatgtcaatgaaaa 339
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>ref|XM_530924.1| PREDICTED: Pan troglodytes LOC462664 (LOC462664), mRNA
          Length = 1119

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 422  ttgctgccatttgatctttg 441
            ||||||||||||||||||||
Sbjct: 1030 ttgctgccatttgatctttg 1049
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>gb|AC103672.7| Mus musculus chromosome 15, clone RP24-351G3, complete sequence
          Length = 192753

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 32    atacaagcacatctttataa 51
             ||||||||||||||||||||
Sbjct: 23741 atacaagcacatctttataa 23722
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>gb|AC148089.8| Mus musculus chromosome 8, clone RP24-366L10, complete sequence
          Length = 178426

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 567   tccaccattggttcttcttgtctg 590
             ||||||||||||||||| ||||||
Sbjct: 77386 tccaccattggttcttcgtgtctg 77363
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>gb|AF321298.1| Walrus calicivirus non-structural polyprotein, capsid, and putative
            nucleic-acid binding protein genes, complete cds
          Length = 8289

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 91   tctgaatgttgccaattcac 110
            ||||||||||||||||||||
Sbjct: 3747 tctgaatgttgccaattcac 3728
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>gb|BC043639.1| Xenopus laevis similar to enhancer of split related, mRNA (cDNA clone
            MGC:53782 IMAGE:5537441), complete cds
          Length = 1651

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   atacaagcacatctttataa 51
            ||||||||||||||||||||
Sbjct: 1371 atacaagcacatctttataa 1352
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>emb|AL356276.9| Human DNA sequence from clone RP11-367J7 on chromosome 1 Contains the
             gene for Fc receptor-like protein 3 (FCRH3), a novel gene,
             a pseudogene similar to part of SON DNA binding protein
             (SON), a voltage-dependent anion channel 1 (VDAC1)
             pseudogene, the SPAP1 gene for SH2 domain containing
             phosphatase anchor protein 1 and the 3' end of the gene
             for Fc receptor-like protein 1 (FCRH1), complete sequence
          Length = 160356

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 89    tctctgaatgttgccaattc 108
             ||||||||||||||||||||
Sbjct: 31500 tctctgaatgttgccaattc 31481
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>emb|AL157828.14| Human DNA sequence from clone RP11-214I20 on chromosome 9p22.3-24
            Contains the 5' end of a novel gene and the 3' end of a
            novel gene (FLJ38505 FLJ90271), complete sequence
          Length = 100927

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 395  ataatcaccttaggacagag 414
            ||||||||||||||||||||
Sbjct: 6288 ataatcaccttaggacagag 6307
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>emb|AL117348.26|HSDJ559A3 Human DNA sequence from clone RP4-559A3 on chromosome 1q41-42.2
             Contains the 5' end of a novel gene (KIAA0792), the LEFTB
             gene for left-right determination, factor B, the PYCR2
             gene for pyrroline-5-carboxylate reductase family, member
             2, the EBAF gene for endometrial bleeding associated
             factor (left-right determination, factor A; transforming
             growth factor beta superfamily), a novel gene, an NADH
             dehydrogenase (ubiquinone) 1 alpha subcomplex, 3, 9kDa
             (NDUFA3) pseudogene and two CpG islands, complete sequence
          Length = 127736

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 363   aaaggaataccagcactcca 382
             ||||||||||||||||||||
Sbjct: 20826 aaaggaataccagcactcca 20845
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>emb|AL035690.10|HS202I21 Human DNA sequence from clone RP1-202I21 on chromosome 6p21.1-21.2
             Contains a novel gene (FLJ11101, DKFZp434H012), a
             pseudogene similar to part of breast cancer antigen
             NY-BR-1,  the GLP1R gene for glucagon-like peptide 1
             receptor, a 40S ribosomal protein S2 (RPS2) pseudogene,
             the 3' part of the DNAH8 gene for dynein axonemal heavy
             polypeptide 8 and CpG islands, complete sequence
          Length = 142665

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 422   ttgctgccatttgatctttg 441
             ||||||||||||||||||||
Sbjct: 40216 ttgctgccatttgatctttg 40235
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>gb|AC159618.2| Mus musculus BAC clone RP24-472P16 from chromosome 12, complete
             sequence
          Length = 170146

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   caacatgtcaatgaaaacaa 236
             ||||||||||||||||||||
Sbjct: 49050 caacatgtcaatgaaaacaa 49031
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>gb|BC022007.2| Homo sapiens chromosome 6 open reading frame 64, mRNA (cDNA clone
           MGC:26272 IMAGE:4825803), complete cds
          Length = 1125

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 ttgctgccatttgatctttg 441
           ||||||||||||||||||||
Sbjct: 721 ttgctgccatttgatctttg 740
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>gb|AC106726.3| Homo sapiens 3 BAC RP11-450I19 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 200359

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 487  ggaacaagtttgagaagctt 506
            ||||||||||||||||||||
Sbjct: 4986 ggaacaagtttgagaagctt 5005
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>gb|AC131068.11| Mus musculus chromosome 15, clone RP23-383I12, complete sequence
          Length = 183651

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 32     atacaagcacatctttataa 51
              ||||||||||||||||||||
Sbjct: 157632 atacaagcacatctttataa 157613
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>emb|CR627244.1| Homo sapiens mRNA; cDNA DKFZp781B2319 (from clone DKFZp781B2319)
          Length = 5193

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 422  ttgctgccatttgatctttg 441
            ||||||||||||||||||||
Sbjct: 5088 ttgctgccatttgatctttg 5107
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>dbj|AK125622.1| Homo sapiens cDNA FLJ43634 fis, clone SPLEN2036712
          Length = 2558

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 89   tctctgaatgttgccaattc 108
            ||||||||||||||||||||
Sbjct: 1606 tctctgaatgttgccaattc 1625
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>dbj|AK124992.1| Homo sapiens cDNA FLJ43002 fis, clone BRTHA2013054
          Length = 3547

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 422  ttgctgccatttgatctttg 441
            ||||||||||||||||||||
Sbjct: 3458 ttgctgccatttgatctttg 3477
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>emb|CR621024.1| full-length cDNA clone CS0DL004YL07 of B cells (Ramos cell line)
           Cot 25-normalized of Homo sapiens (human)
          Length = 1622

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 ttgctgccatttgatctttg 441
           ||||||||||||||||||||
Sbjct: 588 ttgctgccatttgatctttg 607
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>emb|CR593115.1| full-length cDNA clone CS0DI059YE11 of Placenta Cot 25-normalized
           of Homo sapiens (human)
          Length = 1965

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 ttgctgccatttgatctttg 441
           ||||||||||||||||||||
Sbjct: 784 ttgctgccatttgatctttg 803
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>dbj|AP007162.1| Aspergillus oryzae RIB40 genomic DNA, SC102
          Length = 1779707

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 593    cggcaccattgacaagcaat 612
              ||||||||||||||||||||
Sbjct: 773523 cggcaccattgacaagcaat 773504
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>gb|AC006931.6| Arabidopsis thaliana chromosome 2 clone F7D19 map m551, complete
             sequence
          Length = 115310

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   acacaacatgtcaatgaaaa 233
             ||||||||||||||||||||
Sbjct: 22691 acacaacatgtcaatgaaaa 22710
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>gb|AC006580.4| Arabidopsis thaliana chromosome 2 clone F23E6 map m551, complete
             sequence
          Length = 34842

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 214   acacaacatgtcaatgaaaa 233
             ||||||||||||||||||||
Sbjct: 26091 acacaacatgtcaatgaaaa 26110
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>gb|AC023122.9| Homo sapiens BAC clone RP11-297L21 from 3, complete sequence
          Length = 178642

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 487  ggaacaagtttgagaagctt 506
            ||||||||||||||||||||
Sbjct: 2654 ggaacaagtttgagaagctt 2635
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>gb|CP000254.1| Methanospirillum hungatei JF-1, complete genome
          Length = 3544738

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 5       tgttctgaattctgcagttt 24
               ||||||||||||||||||||
Sbjct: 2282861 tgttctgaattctgcagttt 2282880
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>emb|BX511107.3| Zebrafish DNA sequence from clone CH211-117I13 in linkage group 23,
             complete sequence
          Length = 165497

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 510   cagatcatatgagttgaagt 529
             ||||||||||||||||||||
Sbjct: 36457 cagatcatatgagttgaagt 36438
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>gb|AF383157.1|AF383157 Xenopus laevis enhancer of split related 1 (ESR1) mRNA, complete cds
          Length = 1623

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 32   atacaagcacatctttataa 51
            ||||||||||||||||||||
Sbjct: 1386 atacaagcacatctttataa 1367
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      ttgcaactaatgtagtaact 73
               ||||||||||||||||||||
Sbjct: 3846287 ttgcaactaatgtagtaact 3846268
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>emb|BX539308.3| Zebrafish DNA sequence from clone DKEYP-84C8 in linkage group 1, complete
              sequence
          Length = 176769

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 48     ataatgttgcaactaatgta 67
              ||||||||||||||||||||
Sbjct: 144898 ataatgttgcaactaatgta 144917
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>gb|AC012562.5|AC012562 Arabidopsis thaliana chromosome 3 BAC F17O14 genomic sequence, complete
             sequence
          Length = 90721

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 246   aaaccttccaagttccaagt 265
             ||||||||||||||||||||
Sbjct: 66709 aaaccttccaagttccaagt 66728
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>gb|AC127894.6| Homo sapiens 12 BAC RP11-324P9 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 96967

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 475   cctctgttggctggaacaag 494
             ||||||||||||||||||||
Sbjct: 59999 cctctgttggctggaacaag 60018
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>dbj|AP004113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1116_A06
          Length = 176062

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     ttgcaactaatgtagtaact 73
              ||||||||||||||||||||
Sbjct: 102619 ttgcaactaatgtagtaact 102600
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>dbj|AP004836.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0030G02
          Length = 187265

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 54    ttgcaactaatgtagtaact 73
             ||||||||||||||||||||
Sbjct: 44758 ttgcaactaatgtagtaact 44739
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>gb|AC134523.5| Mus musculus BAC clone RP24-492M8 from 5, complete sequence
          Length = 178801

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 481   ttggctggaacaagtttgag 500
             ||||||||||||||||||||
Sbjct: 24766 ttggctggaacaagtttgag 24785
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>emb|CT030246.7| Mouse DNA sequence from clone RP24-400A10 on chromosome 12, complete
            sequence
          Length = 158577

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 217  caacatgtcaatgaaaacaa 236
            ||||||||||||||||||||
Sbjct: 7073 caacatgtcaatgaaaacaa 7092
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>emb|AL136839.1|HSM801807 Homo sapiens mRNA; cDNA DKFZp434H012 (from clone DKFZp434H012);
           complete cds
          Length = 1156

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 422 ttgctgccatttgatctttg 441
           ||||||||||||||||||||
Sbjct: 752 ttgctgccatttgatctttg 771


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,571,296
Number of Sequences: 3902068
Number of extensions: 5571296
Number of successful extensions: 98707
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 98360
Number of HSP's gapped (non-prelim): 347
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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