ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags4l15
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CALX_SOYBN (Q39817) Calnexin homolog precursor 92 9e-19
2CALX_PEA (O82709) Calnexin homolog precursor 85 2e-16
3CALX2_ARATH (Q38798) Calnexin homolog 2 precursor 84 2e-16
4CALX_HELTU (Q39994) Calnexin homolog precursor 79 8e-15
5CALX1_ARATH (P29402) Calnexin homolog 1 precursor 73 5e-13
6SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precurs... 32 1.8
7KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-ass... 31 3.1
8ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1) 30 4.0

>CALX_SOYBN (Q39817) Calnexin homolog precursor|
          Length = 546

 Score = 92.4 bits (228), Expect = 9e-19
 Identities = 44/76 (57%), Positives = 54/76 (71%)
 Frame = -3

Query: 585 KXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILAS 406
           K        S+ +S FQKK+F +LYKIADIPFL  +K KI DLIEK EKQPN+TI IL +
Sbjct: 422 KAEEEAATGSDGISGFQKKVFDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVA 481

Query: 405 VAVILVTVLFRTIFGG 358
           V V+ V++ FR IFGG
Sbjct: 482 VVVVFVSIFFRLIFGG 497



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>CALX_PEA (O82709) Calnexin homolog precursor|
          Length = 551

 Score = 84.7 bits (208), Expect = 2e-16
 Identities = 40/67 (59%), Positives = 51/67 (76%)
 Frame = -3

Query: 558 SEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVL 379
           SE ++  QKK F +LYKIADI FL   K KII++IEKGEKQPN+TI I+ SV ++ V++ 
Sbjct: 436 SEGIAGIQKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIF 495

Query: 378 FRTIFGG 358
           FR IFGG
Sbjct: 496 FRLIFGG 502



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>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor|
          Length = 532

 Score = 84.3 bits (207), Expect = 2e-16
 Identities = 40/98 (40%), Positives = 58/98 (59%)
 Frame = -3

Query: 588 QKXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILA 409
           QK       E++ L  +QKK+F +LYK+ADI FL  YK KI++LIEK E QPN+TI +L 
Sbjct: 414 QKAEDEAAGEADGLKSYQKKVFDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLI 473

Query: 408 SVAVILVTVLFRTIFGGXXXXXXXXXXXXXXXPSATEA 295
           S+ ++ +++ F+ IFGG                S +EA
Sbjct: 474 SIVIVFLSLFFKLIFGGAKAKVEKKKPETAAETSTSEA 511



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>CALX_HELTU (Q39994) Calnexin homolog precursor|
          Length = 540

 Score = 79.3 bits (194), Expect = 8e-15
 Identities = 33/66 (50%), Positives = 50/66 (75%)
 Frame = -3

Query: 555 EDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLF 376
           + L   QK +F VLYKIAD+PFL  +K+K+++LIEK E QPNITI ++ S+ V++ ++L 
Sbjct: 426 DGLKGIQKAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILL 485

Query: 375 RTIFGG 358
           + +FGG
Sbjct: 486 KLLFGG 491



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>CALX1_ARATH (P29402) Calnexin homolog 1 precursor|
          Length = 530

 Score = 73.2 bits (178), Expect = 5e-13
 Identities = 32/77 (41%), Positives = 49/77 (63%)
 Frame = -3

Query: 588 QKXXXXXXXESEDLSEFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILA 409
           QK        ++ L  +QK +F +L K+AD+ FL  YK KI +LIEK E+QPN+TI +L 
Sbjct: 412 QKAEEEAAGSADGLKSYQKVVFDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLV 471

Query: 408 SVAVILVTVLFRTIFGG 358
           ++ V+  ++  + IFGG
Sbjct: 472 AIVVVFFSLFLKLIFGG 488



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>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger|
           receptor expressed by endothelial cells 2 protein)
           (SREC-II) (SRECRP-1)
          Length = 866

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%)
 Frame = -2

Query: 415 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 290
           +G  C   CYC+  +    Q G+  C A    R C  +  C+ S C
Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222



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>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein|
           5.6) (Ultrahigh sulfur keratin-associated protein 5.6)
          Length = 129

 Score = 30.8 bits (68), Expect = 3.1
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 406 SCCHPCYCALQNHFRWQEGSGTCEARCC 323
           SCC PCYC+         GS  C++ CC
Sbjct: 89  SCCKPCYCSSGC------GSSCCQSSCC 110



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>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)|
          Length = 545

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 10/32 (31%), Positives = 17/32 (53%)
 Frame = -2

Query: 391 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 296
           CY + ++H R   G   C+ + CG+   C+ S
Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64,589,802
Number of Sequences: 219361
Number of extensions: 1066966
Number of successful extensions: 3306
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3301
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5158951200
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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