ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5a14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase)... 32 1.8
2GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region ge... 30 5.2
3HAM_DROME (Q8I7Z8) Transcription factor hamlet 29 8.8

>BGLS_SCHCO (P29091) Beta-glucosidase (EC 3.2.1.21) (Gentiobiase) (Cellobiase)|
           (Beta-D-glucoside glucohydrolase) (Fragment)
          Length = 192

 Score = 31.6 bits (70), Expect = 1.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 442 VMDWHSGDAADGVAMLSPATMPKVVPSET-GTILDGSWPEHGALEAALWS 588
           ++ WH GDA   V  ++ A    +V   T G I+  +W EH  ++A +WS
Sbjct: 70  LLAWHDGDAL--VQAVADANENTIVAVNTVGAIITEAWIEHPNVKAVVWS 117



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>GSCR1_HUMAN (Q9NZM4) Glioma tumor suppressor candidate region gene 1 protein|
          Length = 1509

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -2

Query: 581 SAASNAPCSGQEPSKIVPVSEGTTFGIVAGDNIATPSAASPECQSMTLCGP 429
           S   +AP   Q+P+   PV++G   G  A D+ A+P+ A     +  L GP
Sbjct: 670 SVIVSAPPPAQDPAPATPVAKGAGLGPQAPDSQASPAPAPQIPAAAPLKGP 720



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>HAM_DROME (Q8I7Z8) Transcription factor hamlet|
          Length = 990

 Score = 29.3 bits (64), Expect = 8.8
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = -1

Query: 435 RAHQETHHGALPPQEARATEAGAQAPAPPR 346
           R HQ  H   LP Q   A  A +  PAPPR
Sbjct: 403 RHHQHPHQHPLPHQPHLAATATSTCPAPPR 432


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,561,609
Number of Sequences: 219361
Number of extensions: 1041510
Number of successful extensions: 4574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4569
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 5101629520
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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