ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5a10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 i... 40 1.5
2gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosom... 38 6.0
3gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosom... 38 6.0
4gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell ... 38 6.0
5gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswel... 38 6.0
6ref|NM_140498.1| Drosophila melanogaster CG7003-RA (CG7003), mRNA 38 6.0
7gb|AY075187.1| Drosophila melanogaster AT13263 full length cDNA 38 6.0
8gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53... 38 6.0

>emb|BX322655.10| Zebrafish DNA sequence from clone DKEYP-53E12 in linkage group 8,
             complete sequence
          Length = 184723

 Score = 40.1 bits (20), Expect = 1.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 99    gtgctgctccatatgtcttg 118
             ||||||||||||||||||||
Sbjct: 76747 gtgctgctccatatgtcttg 76766



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>gb|AC141899.4| Mus musculus BAC clone RP23-116G15 from chromosome 10, complete sequence
          Length = 210306

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 85     gtctttgagattcagtgctgctc 107
              |||||||||||| ||||||||||
Sbjct: 194531 gtctttgagattgagtgctgctc 194509



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>gb|AC162908.4| Mus musculus BAC clone RP24-296A15 from chromosome 10, complete
             sequence
          Length = 170988

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 85    gtctttgagattcagtgctgctc 107
             |||||||||||| ||||||||||
Sbjct: 37227 gtctttgagattgagtgctgctc 37205



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>gb|AC091209.3| Drosophila melanogaster 3L BAC RP98-3G6 (Roswell Park Cancer Institute
              Drosophila BAC Library) complete sequence
          Length = 194979

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 58     actgcatcggagccgccactgtc 80
              |||||||||||| ||||||||||
Sbjct: 173374 actgcatcggaggcgccactgtc 173352



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>gb|AC010071.6| Drosophila melanogaster 3L BAC RP98-18G16 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 172540

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 58    actgcatcggagccgccactgtc 80
             |||||||||||| ||||||||||
Sbjct: 83171 actgcatcggaggcgccactgtc 83193



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>ref|NM_140498.1| Drosophila melanogaster CG7003-RA (CG7003), mRNA
          Length = 4100

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 58   actgcatcggagccgccactgtc 80
            |||||||||||| ||||||||||
Sbjct: 2936 actgcatcggaggcgccactgtc 2958



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>gb|AY075187.1| Drosophila melanogaster AT13263 full length cDNA
          Length = 3625

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                   
Query: 58   actgcatcggagccgccactgtc 80
            |||||||||||| ||||||||||
Sbjct: 2936 actgcatcggaggcgccactgtc 2958



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>gb|AE003532.3| Drosophila melanogaster chromosome 3L, section 53 of 83 of the complete
              sequence
          Length = 295875

 Score = 38.2 bits (19), Expect = 6.0
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                     
Query: 58     actgcatcggagccgccactgtc 80
              |||||||||||| ||||||||||
Sbjct: 233927 actgcatcggaggcgccactgtc 233905


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 596,261
Number of Sequences: 3902068
Number of extensions: 596261
Number of successful extensions: 38091
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 38075
Number of HSP's gapped (non-prelim): 16
length of query: 129
length of database: 17,233,045,268
effective HSP length: 21
effective length of query: 108
effective length of database: 17,151,101,840
effective search space: 1852318998720
effective search space used: 1852318998720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
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