| Clone Name | rbags5a08 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK104352.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-G10, full insert sequence Length = 1129 Score = 291 bits (147), Expect = 1e-75 Identities = 291/339 (85%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct: 926 cagccatcacatctgatactctcaagacaatgtagttggtgccatcagctcccttgaact 867 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | |||||||||||||||||||| |||||||||||| | ||| || |||| ||||||| Sbjct: 866 cactgcctgcgtacttggagtacatcacagtgctgcccgctgaaactgacaatggctgcc 807 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | |||||||| || || || | ||| |||||||| |||||||||||||| || ||||||| Sbjct: 806 tcttgccttcatcatcaagagggcctggaccaacggctacaactgttccgattgatggct 747 Query: 359 tctccttggttgtctcggtgaggataagaccagcttcagtcttgtctgaagcctctgcaa 418 ||||||| || || || ||||| ||||| ||| | |||| |||||| |||||| |||| Sbjct: 746 tctccttagtggtttcagtgagaataaggccaccagcagttttgtcttcagcctcagcaa 687 Query: 419 ccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaagaa 478 ||||||| |||||||||||||| || |||||||| |||||||||||||||| ||||||| Sbjct: 686 ccttgatgagaacccggtcattaaggggcttcatatctttgacatcatcagtctcaagaa 627 Query: 479 tacctatgatgtcatcctctttcataataagatgcttgg 517 ||| ||||| ||||||||||| | ||||||||| |||| Sbjct: 626 caccaatgatatcatcctcttttagaataagatgtttgg 588
>dbj|AK065072.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001K09, full insert sequence Length = 1130 Score = 283 bits (143), Expect = 3e-73 Identities = 290/339 (85%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||| Sbjct: 927 cagccatcacatctgatactctcaagacaatgtagttggcgccatcagctcccttgaact 868 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | |||||||||||||||||||| |||||||||||| | ||| || |||| ||||||| Sbjct: 867 cactgcctgcgtacttggagtacatcacagtgctgcccgctgaaactgacaatggctgcc 808 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | |||||||| || || || | ||| |||||||| |||||||||||||| || ||||||| Sbjct: 807 tcttgccttcatcatcaagagggcctggaccaacggctacaactgttccgattgatggct 748 Query: 359 tctccttggttgtctcggtgaggataagaccagcttcagtcttgtctgaagcctctgcaa 418 ||||||| || || || ||||| ||||| ||| | |||| |||||| |||||| |||| Sbjct: 747 tctccttagtggtttcagtgagaataaggccaccagcagttttgtcttcagcctcagcaa 688 Query: 419 ccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaagaa 478 ||||||| |||||||||||||| || |||||||| |||||||||||||||| ||||||| Sbjct: 687 ccttgatgagaacccggtcattaaggggcttcatatctttgacatcatcagtctcaagaa 628 Query: 479 tacctatgatgtcatcctctttcataataagatgcttgg 517 ||| ||||| ||||||||||| | ||||||||| |||| Sbjct: 627 caccaatgatatcatcctcttttagaataagatgtttgg 589
>gb|AY103824.1| Zea mays PCO135715 mRNA sequence Length = 1388 Score = 238 bits (120), Expect = 2e-59 Identities = 297/356 (83%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||||||||| ||| ||||||||||||||||| |||||||| | ||||||||||| Sbjct: 1023 cagccatcacatccgacgctctcaacacaatgtaggccgtgccatccgcgcccttgaact 964 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | ||||| ||||||||||||||||| |||||||| | ||||| ||||| ||||| | Sbjct: 963 cactccctgcatacttggagtacagcactgtgctgcccgccgacactgacagtggctgtc 904 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | |||||||||||||| || | ||||| |||||||||||||| ||||| ||||| |||| Sbjct: 903 tcttgccttcctcgtccagaggacccgggccaacagctacaaccgttcctatggacggct 844 Query: 359 tctccttggttgtctcggtgaggataagaccagcttcagtcttgtctgaagcctctgcaa 418 |||| || ||||| || ||||||||||| || | ||| |||||| || ||||||| Sbjct: 843 tctctttagttgtttcagtgaggataaggcccccaggagttttgtcttcggcttctgcaa 784 Query: 419 ccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaagaa 478 ||||||| ||||| ||||||||||||||||||||||| || |||||||| | ||||||| Sbjct: 783 ccttgatgagaacacggtcattgagaggcttcatgtccttcacatcatctgtctcaagaa 724 Query: 479 tacctatgatgtcatcctctttcataataagatgcttggagttgttgtattcaacc 534 |||| ||||| || || ||||| | |||||||||||| |||| ||| |||||||| Sbjct: 723 taccaatgatatcgtcttctttgagaataagatgctttgagtcattgaattcaacc 668
>dbj|AK066195.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052L05, full insert sequence Length = 1028 Score = 178 bits (90), Expect = 1e-41 Identities = 213/254 (83%) Strand = Plus / Minus Query: 264 cacagtgctgcctggtgacaccgacagcggctgcctgttgccttcctcgtcgagtgagcc 323 |||||||||||| | ||| || |||| |||||||| |||||||| || || || | ||| Sbjct: 842 cacagtgctgcccgctgaaactgacaatggctgcctcttgccttcatcatcaagagggcc 783 Query: 324 cggaccaacagctacaactgttccaatggatggcttctccttggttgtctcggtgaggat 383 |||||||| |||||||||||||| || |||||||||||||| || || || ||||| || Sbjct: 782 tggaccaacggctacaactgttccgattgatggcttctccttagtggtttcagtgagaat 723 Query: 384 aagaccagcttcagtcttgtctgaagcctctgcaaccttgatcagaacccggtcattgag 443 ||| ||| | |||| |||||| |||||| ||||||||||| |||||||||||||| || Sbjct: 722 aaggccaccagcagttttgtcttcagcctcagcaaccttgatgagaacccggtcattaag 663 Query: 444 aggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttcat 503 |||||||| |||||||||||||||| ||||||| ||| ||||| ||||||||||| | Sbjct: 662 gggcttcatatctttgacatcatcagtctcaagaacaccaatgatatcatcctcttttag 603 Query: 504 aataagatgcttgg 517 ||||||||| |||| Sbjct: 602 aataagatgtttgg 589
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 157 bits (79), Expect = 5e-35 Identities = 142/163 (87%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct: 4964203 cagccatcacatctgatactctcaagacaatgtagttggtgccatcagctcccttgaact 4964144 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | |||||||||||||||||||| |||||||||||| | ||| || |||| ||||||| Sbjct: 4964143 cactgcctgcgtacttggagtacatcacagtgctgcccgctgaaactgacaatggctgcc 4964084 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaac 341 | |||||||| || || || | ||| |||||||| |||||||| Sbjct: 4964083 tcttgccttcatcatcaagagggcctggaccaacggctacaac 4964041 Score = 157 bits (79), Expect = 5e-35 Identities = 142/163 (87%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct: 4949083 cagccatcacatctgatactctcaagacaatgtagttggtgccatcagctcccttgaact 4949024 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | |||||||||||||||||||| |||||||||||| | ||| || |||| ||||||| Sbjct: 4949023 cactgcctgcgtacttggagtacatcacagtgctgcccgctgaaactgacaatggctgcc 4948964 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaac 341 | |||||||| || || || | ||| |||||||| |||||||| Sbjct: 4948963 tcttgccttcatcatcaagagggcctggaccaacggctacaac 4948921 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 |||||||| |||||||||||||| || |||||||| |||||||||||||||| |||||| Sbjct: 4962422 accttgatgagaacccggtcattaaggggcttcatatctttgacatcatcagtctcaaga 4962363 Query: 478 atacctatgatgtcatcctctttcataataagatgcttgg 517 | ||| ||||| ||||||||||| | ||||||||| |||| Sbjct: 4962362 acaccaatgatatcatcctcttttagaataagatgtttgg 4962323 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 |||||||| |||||||||||||| || |||||||| |||||||||||||||| |||||| Sbjct: 4947302 accttgatgagaacccggtcattaaggggcttcatatctttgacatcatcagtctcaaga 4947243 Query: 478 atacctatgatgtcatcctctttcataataagatgcttgg 517 | ||| ||||| ||||||||||| | ||||||||| |||| Sbjct: 4947242 acaccaatgatatcatcctcttttagaataagatgtttgg 4947203 Score = 44.1 bits (22), Expect = 0.47 Identities = 67/82 (81%) Strand = Plus / Minus Query: 340 actgttccaatggatggcttctccttggttgtctcggtgaggataagaccagcttcagtc 399 |||||||| || |||||||||||||| || || || ||||| ||||| ||| | |||| Sbjct: 4962659 actgttccgattgatggcttctccttagtggtttcagtgagaataaggccaccagcagtt 4962600 Query: 400 ttgtctgaagcctctgcaacct 421 |||||| |||||| ||||||| Sbjct: 4962599 ttgtcttcagcctcagcaacct 4962578 Score = 44.1 bits (22), Expect = 0.47 Identities = 67/82 (81%) Strand = Plus / Minus Query: 340 actgttccaatggatggcttctccttggttgtctcggtgaggataagaccagcttcagtc 399 |||||||| || |||||||||||||| || || || ||||| ||||| ||| | |||| Sbjct: 4947539 actgttccgattgatggcttctccttagtggtttcagtgagaataaggccaccagcagtt 4947480 Query: 400 ttgtctgaagcctctgcaacct 421 |||||| |||||| ||||||| Sbjct: 4947479 ttgtcttcagcctcagcaacct 4947458
>dbj|AP006056.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1172G12 Length = 171974 Score = 157 bits (79), Expect = 5e-35 Identities = 142/163 (87%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct: 6317 cagccatcacatctgatactctcaagacaatgtagttggtgccatcagctcccttgaact 6258 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | |||||||||||||||||||| |||||||||||| | ||| || |||| ||||||| Sbjct: 6257 cactgcctgcgtacttggagtacatcacagtgctgcccgctgaaactgacaatggctgcc 6198 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaac 341 | |||||||| || || || | ||| |||||||| |||||||| Sbjct: 6197 tcttgccttcatcatcaagagggcctggaccaacggctacaac 6155 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 |||||||| |||||||||||||| || |||||||| |||||||||||||||| |||||| Sbjct: 4536 accttgatgagaacccggtcattaaggggcttcatatctttgacatcatcagtctcaaga 4477 Query: 478 atacctatgatgtcatcctctttcataataagatgcttgg 517 | ||| ||||| ||||||||||| | ||||||||| |||| Sbjct: 4476 acaccaatgatatcatcctcttttagaataagatgtttgg 4437 Score = 44.1 bits (22), Expect = 0.47 Identities = 67/82 (81%) Strand = Plus / Minus Query: 340 actgttccaatggatggcttctccttggttgtctcggtgaggataagaccagcttcagtc 399 |||||||| || |||||||||||||| || || || ||||| ||||| ||| | |||| Sbjct: 4773 actgttccgattgatggcttctccttagtggtttcagtgagaataaggccaccagcagtt 4714 Query: 400 ttgtctgaagcctctgcaacct 421 |||||| |||||| ||||||| Sbjct: 4713 ttgtcttcagcctcagcaacct 4692
>dbj|AP003510.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0528E04 Length = 170701 Score = 157 bits (79), Expect = 5e-35 Identities = 142/163 (87%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct: 151686 cagccatcacatctgatactctcaagacaatgtagttggtgccatcagctcccttgaact 151627 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | |||||||||||||||||||| |||||||||||| | ||| || |||| ||||||| Sbjct: 151626 cactgcctgcgtacttggagtacatcacagtgctgcccgctgaaactgacaatggctgcc 151567 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaac 341 | |||||||| || || || | ||| |||||||| |||||||| Sbjct: 151566 tcttgccttcatcatcaagagggcctggaccaacggctacaac 151524 Score = 157 bits (79), Expect = 5e-35 Identities = 142/163 (87%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct: 136566 cagccatcacatctgatactctcaagacaatgtagttggtgccatcagctcccttgaact 136507 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 | | |||||||||||||||||||| |||||||||||| | ||| || |||| ||||||| Sbjct: 136506 cactgcctgcgtacttggagtacatcacagtgctgcccgctgaaactgacaatggctgcc 136447 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaac 341 | |||||||| || || || | ||| |||||||| |||||||| Sbjct: 136446 tcttgccttcatcatcaagagggcctggaccaacggctacaac 136404 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 |||||||| |||||||||||||| || |||||||| |||||||||||||||| |||||| Sbjct: 149905 accttgatgagaacccggtcattaaggggcttcatatctttgacatcatcagtctcaaga 149846 Query: 478 atacctatgatgtcatcctctttcataataagatgcttgg 517 | ||| ||||| ||||||||||| | ||||||||| |||| Sbjct: 149845 acaccaatgatatcatcctcttttagaataagatgtttgg 149806 Score = 103 bits (52), Expect = 6e-19 Identities = 88/100 (88%) Strand = Plus / Minus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 |||||||| |||||||||||||| || |||||||| |||||||||||||||| |||||| Sbjct: 134785 accttgatgagaacccggtcattaaggggcttcatatctttgacatcatcagtctcaaga 134726 Query: 478 atacctatgatgtcatcctctttcataataagatgcttgg 517 | ||| ||||| ||||||||||| | ||||||||| |||| Sbjct: 134725 acaccaatgatatcatcctcttttagaataagatgtttgg 134686 Score = 44.1 bits (22), Expect = 0.47 Identities = 67/82 (81%) Strand = Plus / Minus Query: 340 actgttccaatggatggcttctccttggttgtctcggtgaggataagaccagcttcagtc 399 |||||||| || |||||||||||||| || || || ||||| ||||| ||| | |||| Sbjct: 150142 actgttccgattgatggcttctccttagtggtttcagtgagaataaggccaccagcagtt 150083 Query: 400 ttgtctgaagcctctgcaacct 421 |||||| |||||| ||||||| Sbjct: 150082 ttgtcttcagcctcagcaacct 150061 Score = 44.1 bits (22), Expect = 0.47 Identities = 67/82 (81%) Strand = Plus / Minus Query: 340 actgttccaatggatggcttctccttggttgtctcggtgaggataagaccagcttcagtc 399 |||||||| || |||||||||||||| || || || ||||| ||||| ||| | |||| Sbjct: 135022 actgttccgattgatggcttctccttagtggtttcagtgagaataaggccaccagcagtt 134963 Query: 400 ttgtctgaagcctctgcaacct 421 |||||| |||||| ||||||| Sbjct: 134962 ttgtcttcagcctcagcaacct 134941
>dbj|D29698.1|RICYK10 Oryza sativa mRNA, partial homologous to chaperonin 10 gene Length = 319 Score = 131 bits (66), Expect = 3e-27 Identities = 89/97 (91%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 |||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||| Sbjct: 125 cagccatcacatctgatactctcaagacaatgtagttggtgccatcagctcccttgaact 66 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcc 275 | | |||||| ||||||||||||| |||||||||||| Sbjct: 65 cactgcctgcntacttggagtacatcacagtgctgcc 29
>gb|AY109572.1| Zea mays CL1008_1 mRNA sequence Length = 1955 Score = 105 bits (53), Expect = 1e-19 Identities = 252/320 (78%) Strand = Plus / Minus Query: 181 gccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaactcg 240 ||||||| ||| ||| | |||| ||| |||||||| ||||| || | ||||||||||||| Sbjct: 1728 gccatcagatccgacgccctcagcacgatgtagttcgtgccgtcggcgcccttgaactcg 1669 Query: 241 ccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcctg 300 | ||| ||||||||||||||||| |||||||| || | || || ||||||| |||| Sbjct: 1668 ctgccggcgtacttggagtacaggacagtgctccccgcggagacggacagcgcgagcctc 1609 Query: 301 ttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttc 360 | ||| |||||||| | || || ||||| ||||| || ||||| || ||||||||| Sbjct: 1608 tcgccatcctcgtccannnnncctgggccaaccgctacgaccgttccgatagatggcttc 1549 Query: 361 tccttggttgtctcggtgaggataagaccagcttcagtcttgtctgaagcctctgcaacc 420 ||||||| || || || || | || || || ||| |||||| ||| || |||||| Sbjct: 1548 tccttggcagtttccgtaagcagtaggcctcctggagttttgtcttcagcttcagcaacc 1489 Query: 421 ttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaagaata 480 ||||| ||||| ||||| || ||||||||||||||||| || ||||||| ||| | ||| Sbjct: 1488 ttgattagaacacggtcgttcagaggcttcatgtctttcacgtcatcagtttctaagata 1429 Query: 481 cctatgatgtcatcctcttt 500 ||||| | |||||||||||| Sbjct: 1428 cctataacgtcatcctcttt 1409
>ref|XM_468113.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1056 Score = 89.7 bits (45), Expect = 9e-15 Identities = 156/193 (80%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 860 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 801 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 ||| ||| || || ||||| || || ||||||||||||| || ||||||| || || Sbjct: 800 cgctgccagcatatttggaatatagaacagtgctgcctgcagagaccgacaatggaatcc 741 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | ||||||||||| || || | || || |||||||| || || |||||||| || |||| Sbjct: 740 tcttgccttcctcatccagaggaccagggccaacagccacgaccgttccaatagacggct 681 Query: 359 tctccttggttgt 371 ||||||| ||||| Sbjct: 680 tctcctttgttgt 668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 597 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 538 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 537 agaatcagatggttgga 521
>ref|XM_468112.1| Oryza sativa (japonica cultivar-group), mRNA Length = 877 Score = 89.7 bits (45), Expect = 9e-15 Identities = 156/193 (80%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 678 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 619 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 ||| ||| || || ||||| || || ||||||||||||| || ||||||| || || Sbjct: 618 cgctgccagcatatttggaatatagaacagtgctgcctgcagagaccgacaatggaatcc 559 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | ||||||||||| || || | || || |||||||| || || |||||||| || |||| Sbjct: 558 tcttgccttcctcatccagaggaccagggccaacagccacgaccgttccaatagacggct 499 Query: 359 tctccttggttgt 371 ||||||| ||||| Sbjct: 498 tctcctttgttgt 486 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 415 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 356 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 355 agaatcagatggttgga 339
>ref|XM_507011.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1369_G08.10-2 mRNA Length = 1111 Score = 89.7 bits (45), Expect = 9e-15 Identities = 156/193 (80%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 859 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 800 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 ||| ||| || || ||||| || || ||||||||||||| || ||||||| || || Sbjct: 799 cgctgccagcatatttggaatatagaacagtgctgcctgcagagaccgacaatggaatcc 740 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | ||||||||||| || || | || || |||||||| || || |||||||| || |||| Sbjct: 739 tcttgccttcctcatccagaggaccagggccaacagccacgaccgttccaatagacggct 680 Query: 359 tctccttggttgt 371 ||||||| ||||| Sbjct: 679 tctcctttgttgt 667 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 596 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 537 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 536 agaatcagatggttgga 520
>dbj|AK119213.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E07, full insert sequence Length = 877 Score = 89.7 bits (45), Expect = 9e-15 Identities = 156/193 (80%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 678 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 619 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 ||| ||| || || ||||| || || ||||||||||||| || ||||||| || || Sbjct: 618 cgctgccagcatatttggaatatagaacagtgctgcctgcagagaccgacaatggaatcc 559 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | ||||||||||| || || | || || |||||||| || || |||||||| || |||| Sbjct: 558 tcttgccttcctcatccagaggaccagggccaacagccacgaccgttccaatagacggct 499 Query: 359 tctccttggttgt 371 ||||||| ||||| Sbjct: 498 tctcctttgttgt 486 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 415 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 356 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 355 agaatcagatggttgga 339
>dbj|AK073762.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067L06, full insert sequence Length = 1111 Score = 89.7 bits (45), Expect = 9e-15 Identities = 156/193 (80%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 859 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 800 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 ||| ||| || || ||||| || || ||||||||||||| || ||||||| || || Sbjct: 799 cgctgccagcatatttggaatatagaacagtgctgcctgcagagaccgacaatggaatcc 740 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | ||||||||||| || || | || || |||||||| || || |||||||| || |||| Sbjct: 739 tcttgccttcctcatccagaggaccagggccaacagccacgaccgttccaatagacggct 680 Query: 359 tctccttggttgt 371 ||||||| ||||| Sbjct: 679 tctcctttgttgt 667 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 596 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 537 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 536 agaatcagatggttgga 520
>dbj|AK060474.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-012-F02, full insert sequence Length = 1056 Score = 89.7 bits (45), Expect = 9e-15 Identities = 156/193 (80%) Strand = Plus / Minus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 860 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 801 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcc 298 ||| ||| || || ||||| || || ||||||||||||| || ||||||| || || Sbjct: 800 cgctgccagcatatttggaatatagaacagtgctgcctgcagagaccgacaatggaatcc 741 Query: 299 tgttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggct 358 | ||||||||||| || || | || || |||||||| || || |||||||| || |||| Sbjct: 740 tcttgccttcctcatccagaggaccagggccaacagccacgaccgttccaatagacggct 681 Query: 359 tctccttggttgt 371 ||||||| ||||| Sbjct: 680 tctcctttgttgt 668 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Minus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 597 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 538 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 537 agaatcagatggttgga 521
>dbj|AK098903.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C22, full insert sequence Length = 1016 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 408 agcctctgcaaccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatc 467 ||||||||||||||| || ||||| |||||||| || ||||||| ||||| |||||||| Sbjct: 597 agcctctgcaaccttaatgagaacacggtcattcagtggcttcagatctttcacatcatc 538 Query: 468 agattcaagaatacctatgatgtcatcctctttcataataagatg 512 | || |||||||| ||||||||||| ||||||| ||| ||||| Sbjct: 537 tgtgtcgagaataccaatgatgtcatcttctttcaaaatgagatg 493
>dbj|AK061837.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D10, full insert sequence Length = 1008 Score = 81.8 bits (41), Expect = 2e-12 Identities = 89/105 (84%) Strand = Plus / Minus Query: 408 agcctctgcaaccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatc 467 ||||||||||||||| || ||||| |||||||| || ||||||| ||||| |||||||| Sbjct: 616 agcctctgcaaccttaatgagaacacggtcattcagtggcttcagatctttcacatcatc 557 Query: 468 agattcaagaatacctatgatgtcatcctctttcataataagatg 512 | || |||||||| ||||||||||| ||||||| ||| ||||| Sbjct: 556 tgtgtcgagaataccaatgatgtcatcttctttcaaaatgagatg 512
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 33133527 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 33133586 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctg 277 ||| ||| || || ||||| || || ||||||||||||| Sbjct: 33133587 cgctgccagcatatttggaatatagaacagtgctgcctg 33133625 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 33134019 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 33134078 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 33134079 agaatcagatggttgga 33134095
>dbj|AP004257.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1369_G08 Length = 104190 Score = 77.8 bits (39), Expect = 3e-11 Identities = 84/99 (84%) Strand = Plus / Plus Query: 179 cagccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaact 238 ||||||| | ||||||||| | |||||| |||||| | |||||||||| ||||||||||| Sbjct: 49187 cagccattagatctgacacccgcaacactatgtagctcgtgccatcagagcccttgaact 49246 Query: 239 cgccgcctgcgtacttggagtacagcacagtgctgcctg 277 ||| ||| || || ||||| || || ||||||||||||| Sbjct: 49247 cgctgccagcatatttggaatatagaacagtgctgcctg 49285 Score = 65.9 bits (33), Expect = 1e-07 Identities = 66/77 (85%) Strand = Plus / Plus Query: 442 agaggcttcatgtctttgacatcatcagattcaagaatacctatgatgtcatcctctttc 501 |||||||||||||| || ||||||||| || |||||||| ||||||||||||||||| Sbjct: 49679 agaggcttcatgtcctttgcatcatcagtctccagaataccaatgatgtcatcctcttta 49738 Query: 502 ataataagatgcttgga 518 | ||| ||||| ||||| Sbjct: 49739 agaatcagatggttgga 49755
>gb|BT018159.1| Zea mays clone EL01N0556C01.c mRNA sequence Length = 974 Score = 75.8 bits (38), Expect = 1e-10 Identities = 74/86 (86%) Strand = Plus / Minus Query: 415 gcaaccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattca 474 ||||||||||| ||||| ||||| || ||||||||||||||||| || ||||||| ||| Sbjct: 541 gcaaccttgattagaacacggtcgttcagaggcttcatgtctttcacgtcatcagtttct 482 Query: 475 agaatacctatgatgtcatcctcttt 500 | |||||||| | |||||||||||| Sbjct: 481 aagatacctataacgtcatcctcttt 456 Score = 61.9 bits (31), Expect = 2e-06 Identities = 148/187 (79%) Strand = Plus / Minus Query: 181 gccatcacatctgacactctcaacacaatgtagttggtgccatcagtgcccttgaactcg 240 ||||||| ||| ||| | |||| ||| |||||||| ||||| || | ||||||||||| Sbjct: 775 gccatcatatccgacgccctcagcactatgtagttcgtgccgtctgcccccttgaactct 716 Query: 241 ccgcctgcgtacttggagtacagcacagtgctgcctggtgacaccgacagcggctgcctg 300 | ||| ||||||||||||||||| ||| |||| || | || ||||||||| |||| Sbjct: 715 ctgccggcgtacttggagtacaggacactgctccccgcggagaccgacagctcgagcctc 656 Query: 301 ttgccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttc 360 | ||| |||||||| || | ||| || ||||| |||| || ||||| || ||||||||| Sbjct: 655 tcgccgtcctcgtccagggggcctgggccaacctctacgaccgttccgatagatggcttc 596 Query: 361 tccttgg 367 ||||||| Sbjct: 595 tccttgg 589
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 ||||| || ||||| |||||||| || ||||||| ||||| |||||||| | || ||| Sbjct: 16184429 accttaatgagaacacggtcattcagtggcttcagatctttcacatcatctgtgtcgaga 16184488 Query: 478 atacctatgatgtcatcctctttcataataagatg 512 ||||| ||||||||||| ||||||| ||| ||||| Sbjct: 16184489 ataccaatgatgtcatcttctttcaaaatgagatg 16184523
>dbj|AP005570.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1344_B01 Length = 170912 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 ||||| || ||||| |||||||| || ||||||| ||||| |||||||| | || ||| Sbjct: 945 accttaatgagaacacggtcattcagtggcttcagatctttcacatcatctgtgtcgaga 1004 Query: 478 atacctatgatgtcatcctctttcataataagatg 512 ||||| ||||||||||| ||||||| ||| ||||| Sbjct: 1005 ataccaatgatgtcatcttctttcaaaatgagatg 1039
>dbj|AP005424.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC clone:P0556H01 Length = 149800 Score = 61.9 bits (31), Expect = 2e-06 Identities = 79/95 (83%) Strand = Plus / Plus Query: 418 accttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattcaaga 477 ||||| || ||||| |||||||| || ||||||| ||||| |||||||| | || ||| Sbjct: 89030 accttaatgagaacacggtcattcagtggcttcagatctttcacatcatctgtgtcgaga 89089 Query: 478 atacctatgatgtcatcctctttcataataagatg 512 ||||| ||||||||||| ||||||| ||| ||||| Sbjct: 89090 ataccaatgatgtcatcttctttcaaaatgagatg 89124
>gb|AY109707.1| Zea mays CL21464_1 mRNA sequence Length = 907 Score = 52.0 bits (26), Expect = 0.002 Identities = 80/98 (81%) Strand = Plus / Plus Query: 415 gcaaccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagattca 474 |||||||| ||||||| || ||||| || || ||||| || || ||||||||| ||| Sbjct: 396 gcaaccttaatcagaatgcgatcattcagtggtttcatatccttcacatcatcactgtca 455 Query: 475 agaatacctatgatgtcatcctctttcataataagatg 512 |||||||| || |||||||| ||||||| ||| ||||| Sbjct: 456 agaataccaattatgtcatcttctttcaaaatgagatg 493
>gb|M87646.1|SPICPN10X Spinach chaperonin 10 (CPN10) mRNA, complete cds Length = 881 Score = 52.0 bits (26), Expect = 0.002 Identities = 41/46 (89%) Strand = Plus / Minus Query: 169 taagagagctcagccatcacatctgacactctcaacacaatgtagt 214 ||||| ||| ||||||||||||| || ||||||||||| ||||||| Sbjct: 815 taagaaagcacagccatcacatccgatactctcaacaccatgtagt 770
>dbj|AP004472.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT17P02, TM0006, complete sequence Length = 72374 Score = 50.1 bits (25), Expect = 0.008 Identities = 37/41 (90%) Strand = Plus / Plus Query: 340 actgttccaatggatggcttctccttggttgtctcggtgag 380 ||||||||||| ||||| ||||||||||||| ||| ||||| Sbjct: 62790 actgttccaatagatggtttctccttggttgcctccgtgag 62830 Score = 42.1 bits (21), Expect = 1.9 Identities = 45/53 (84%) Strand = Plus / Plus Query: 463 tcatcagattcaagaatacctatgatgtcatcctctttcataataagatgctt 515 ||||||| |||||| ||||| | ||||||||| || |||| ||||||||||| Sbjct: 63117 tcatcagtttcaaggataccaacgatgtcatcatccttcagtataagatgctt 63169
>ref|NM_122079.3| Arabidopsis thaliana CPN20 (CHAPERONIN 20); calmodulin binding AT5G20720 (CPN20) transcript variant AT5G20720.2 mRNA, complete cds Length = 948 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 692 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 633 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 632 ttggtagtctcggt 619
>ref|NM_180714.1| Arabidopsis thaliana CPN20 (CHAPERONIN 20); calmodulin binding AT5G20720 (CPN20) transcript variant AT5G20720.1 mRNA, complete cds Length = 963 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 707 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 648 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 647 ttggtagtctcggt 634
>gb|AY062971.1| Arabidopsis thaliana putative chloroplast Cpn21 protein (At5g20720) mRNA, complete cds Length = 793 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 626 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 567 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 566 ttggtagtctcggt 553
>gb|AY034979.1| Arabidopsis thaliana putative chloroplast Cpn21 protein (At5g20720) mRNA, complete cds Length = 973 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 707 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 648 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 647 ttggtagtctcggt 634
>emb|AJ010818.1|ATH010818 Arabidopsis thaliana mRNA for chloroplast Cpn21 protein Length = 951 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 677 ccttcctcgtctagggaacccggtccaactgctatcacggtgccaatagaaggcttctct 618 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 617 ttggtagtctcggt 604
>gb|AF428366.1|AF428366 Arabidopsis thaliana AT5g20720/T1M15_120 mRNA, complete cds Length = 955 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 703 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 644 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 643 ttggtagtctcggt 630
>gb|AF428339.1|AF428339 Arabidopsis thaliana AT5g20720/T1M15_120 mRNA, complete cds Length = 959 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 707 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 648 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 647 ttggtagtctcggt 634
>gb|AF268068.1|AF268068 Arabidopsis thaliana chaperonin 10 (CHCPN10) mRNA, complete cds; chloroplast gene for chloroplast product Length = 903 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 626 ccttcctcgtctagggaacccggtccaactgctatcacggtgccaatagaaggcttctct 567 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 566 ttggtagtctcggt 553
>gb|BT004237.1| Arabidopsis thaliana clone RAFL14-89-L14 (R20431) Length = 2224 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Plus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 154 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 213 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 214 ttggtagtctcggt 227
>dbj|AB007130.1| Arabidopsis thaliana mRNA for chaperonin 20, complete cds Length = 919 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 686 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 627 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 626 ttggtagtctcggt 613
>gb|AF059037.1|AF059037 Arabidopsis thaliana chaperonin 10 (CPN10) mRNA, complete cds Length = 937 Score = 44.1 bits (22), Expect = 0.47 Identities = 61/74 (82%) Strand = Plus / Minus Query: 304 ccttcctcgtcgagtgagcccggaccaacagctacaactgttccaatggatggcttctcc 363 ||||||||||| || || ||||| ||||| |||| || || ||||| || |||||||| Sbjct: 678 ccttcctcgtctagggaacccggtccaactgctatcaccgtgccaatagaaggcttctct 619 Query: 364 ttggttgtctcggt 377 ||||| |||||||| Sbjct: 618 ttggtagtctcggt 605
>gb|AC165975.4| Mus musculus BAC clone RP23-3L23 from chromosome 5, complete sequence Length = 259091 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 144 gaaacaaagtaacaaactcca 164 ||||||||||||||||||||| Sbjct: 106781 gaaacaaagtaacaaactcca 106801
>gb|AY542873.2| Medicago truncatula calmodulin-like protein 2 (CAML2) and calmodulin-like protein 1 (CAML1) genes, complete cds Length = 7872 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 agttgttgtattcaaccctca 538 ||||||||||||||||||||| Sbjct: 1484 agttgttgtattcaaccctca 1504
>gb|AC102361.13| Mus musculus chromosome 18, clone RP23-37I2, complete sequence Length = 213628 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 473 caagaatacctatgatgtcat 493 ||||||||||||||||||||| Sbjct: 107946 caagaatacctatgatgtcat 107926
>gb|AY373585.1| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) (MLL) gene, complete cds Length = 89753 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 taagagagctcagccatcaca 189 ||||||||||||||||||||| Sbjct: 87911 taagagagctcagccatcaca 87891
>ref|NM_005933.2| Homo sapiens myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) (MLL), mRNA Length = 14982 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 taagagagctcagccatcaca 189 ||||||||||||||||||||| Sbjct: 12071 taagagagctcagccatcaca 12051
>emb|Z69780.1|HSALL1X37 H.sapiens ALL-1 gene exon 37 Length = 4080 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 taagagagctcagccatcaca 189 ||||||||||||||||||||| Sbjct: 444 taagagagctcagccatcaca 424
>dbj|AP001267.4| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-770J1, complete sequence Length = 194310 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 taagagagctcagccatcaca 189 ||||||||||||||||||||| Sbjct: 147748 taagagagctcagccatcaca 147728
>dbj|D90041.1|HUMAACTA2 Homo sapiens mRNA for arylamine N-acetyltransferase, complete cds Length = 1319 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 205 acaatgtagttggtgccatca 225 ||||||||||||||||||||| Sbjct: 508 acaatgtagttggtgccatca 488
>dbj|AB209508.1| Homo sapiens mRNA for myeloid/lymphoid or mixed-lineage leukemia (trithorax homolog, Drosophila) variant protein Length = 11222 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 taagagagctcagccatcaca 189 ||||||||||||||||||||| Sbjct: 9615 taagagagctcagccatcaca 9595
>gb|L04731.1|HUMTRLALL1 Homo sapiens translocation T(4:11) of ALL-1 gene to chromosome 4 Length = 14255 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 169 taagagagctcagccatcaca 189 ||||||||||||||||||||| Sbjct: 11871 taagagagctcagccatcaca 11851
>gb|AC149090.2| Mus musculus BAC clone RP24-130G10 from chromosome Y, complete sequence Length = 114452 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 140 aactgaaacaaagtaacaaa 159 |||||||||||||||||||| Sbjct: 38116 aactgaaacaaagtaacaaa 38097
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence Length = 6365727 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 gcgtacttggagtacagcac 266 |||||||||||||||||||| Sbjct: 4522058 gcgtacttggagtacagcac 4522077
>gb|AC009177.7|ATAC009177 Arabidopsis thaliana chromosome III BAC T12H1 genomic sequence, complete sequence Length = 140064 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 143 tgaaacaaagtaacaaactc 162 |||||||||||||||||||| Sbjct: 79459 tgaaacaaagtaacaaactc 79440
>gb|AC116180.4| Mus musculus BAC clone RP24-167M11 from chromosome 9, complete sequence Length = 149442 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 taaacaaattcgtaaatgtt 29 |||||||||||||||||||| Sbjct: 122125 taaacaaattcgtaaatgtt 122144
>emb|AL356234.18| Human DNA sequence from clone RP11-95M15 on chromosome 6 Contains a novel gene and a protein tyrosine phosphatase non-receptor type 11 (Nooan syndrome) (PTPN11) pseudogene, complete sequence Length = 115224 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 131 tgaactcaaaactgaaacaa 150 |||||||||||||||||||| Sbjct: 55373 tgaactcaaaactgaaacaa 55392
>gb|AC132516.4| Homo sapiens 3 BAC RP11-264A3 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 66262 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttcagtcttgtctgaagcc 411 |||||||||||||||||||| Sbjct: 8986 cttcagtcttgtctgaagcc 8967
>gb|AC116301.8| Homo sapiens 3 BAC RP11-625D20 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 62190 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 392 cttcagtcttgtctgaagcc 411 |||||||||||||||||||| Sbjct: 4915 cttcagtcttgtctgaagcc 4896
>ref|NM_001031051.1| Gallus gallus similar to hypothetical protein MGC29875; novel putative protein similar to YIL091C yeast hypothetical 84 kD protein from SGA1-KTR7 (LOC421384), mRNA Length = 2980 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 cgtacttggagtacagcacagtgc 271 ||||||||||||| |||||||||| Sbjct: 2239 cgtacttggagtagagcacagtgc 2216
>emb|AL671968.17| Mouse DNA sequence from clone RP23-191E3 on chromosome 11 Contains four novel genes, an eukaryotic translation elongation factor 2 (Eef2) pseudogene, a Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed (Fau) pseudogene, the Eif4enif1 gene for eukaryotic translation initiation factor 4E nuclear import factor 1, the Drg1 gene for developmentally regulated GTP binding protein 1, the Zfp278 gene for zinc finger protein 278, the 3' end of the Limk2 gene LIM motif-containing protein kinase 2 and five CpG islands, complete sequence Length = 214546 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aactgaaacaaagtaacaaa 159 |||||||||||||||||||| Sbjct: 12499 aactgaaacaaagtaacaaa 12518
>emb|AJ719771.1| Gallus gallus mRNA for hypothetical protein, clone 6f17 Length = 2980 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 248 cgtacttggagtacagcacagtgc 271 ||||||||||||| |||||||||| Sbjct: 2239 cgtacttggagtagagcacagtgc 2216
>gb|AC006234.4| Arabidopsis thaliana chromosome 2 clone F5H14 map mi148, complete sequence Length = 129667 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 456 tttgacatcatcagattcaa 475 |||||||||||||||||||| Sbjct: 91349 tttgacatcatcagattcaa 91368
>gb|AC087774.27| Homo sapiens 12p BAC RP11-633O13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 184000 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 445 ggcttcatgtctttgacatc 464 |||||||||||||||||||| Sbjct: 128773 ggcttcatgtctttgacatc 128792
>gb|AC097462.2| Homo sapiens BAC clone RP11-18O11 from 4, complete sequence Length = 180973 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 477 aatacctatgatgtcatcct 496 |||||||||||||||||||| Sbjct: 49743 aatacctatgatgtcatcct 49762
>gb|AC147984.3| Mus musculus BAC clone RP24-402A9 from chromosome y, complete sequence Length = 164496 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 140 aactgaaacaaagtaacaaa 159 |||||||||||||||||||| Sbjct: 134284 aactgaaacaaagtaacaaa 134303
>ref|XM_573464.1| PREDICTED: Rattus norvegicus similar to complement factor H-related protein (LOC498241), mRNA Length = 2715 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aattctataaccatctgaaa 78 |||||||||||||||||||| Sbjct: 2689 aattctataaccatctgaaa 2670
>gb|AF436847.2| Rattus norvegicus complement factor H-related protein mRNA, complete cds Length = 2729 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 aattctataaccatctgaaa 78 |||||||||||||||||||| Sbjct: 2689 aattctataaccatctgaaa 2670
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome Length = 6413771 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 247 gcgtacttggagtacagcac 266 |||||||||||||||||||| Sbjct: 4418997 gcgtacttggagtacagcac 4418978
>gb|AF233745.1|AF233745 Lycopersicon esculentum chaperonin 21 precursor, mRNA, complete cds; nuclear gene for chloroplast product Length = 1102 Score = 40.1 bits (20), Expect = 7.4 Identities = 83/104 (79%) Strand = Plus / Minus Query: 412 tctgcaaccttgatcagaacccggtcattgagaggcttcatgtctttgacatcatcagat 471 |||||||||||||| || || | |||||| | |||| || || ||||||||||| | Sbjct: 589 tctgcaaccttgattaggactctgtcatttaatggctgcagatccttgacatcatctgtc 530 Query: 472 tcaagaatacctatgatgtcatcctctttcataataagatgctt 515 ||||||||||| | || ||||||||||||| ||| || ||||| Sbjct: 529 tcaagaataccaacaatatcatcctctttcagaatgaggtgctt 486
>gb|AE000666.1| Methanothermobacter thermautotrophicus str. Delta H, complete genome Length = 1751377 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 cagcaatctcacccctgatg 117 |||||||||||||||||||| Sbjct: 1740200 cagcaatctcacccctgatg 1740181
>gb|AC147631.3| Mus musculus BAC clone RP23-341H6 from 9, complete sequence Length = 169769 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 10 taaacaaattcgtaaatgtt 29 |||||||||||||||||||| Sbjct: 144482 taaacaaattcgtaaatgtt 144463
>emb|AL672147.10| Mouse DNA sequence from clone RP23-434N14 on chromosome X, complete sequence Length = 192252 Score = 40.1 bits (20), Expect = 7.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 145 aaacaaagtaacaaactcca 164 |||||||||||||||||||| Sbjct: 154398 aaacaaagtaacaaactcca 154417
>emb|AL732525.13| Mouse DNA sequence from clone RP23-358I10 on chromosome 2, complete sequence Length = 220495 Score = 40.1 bits (20), Expect = 7.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 194 acactctcaacacaatgtagttgg 217 |||||||||||||| ||||||||| Sbjct: 96313 acactctcaacacagtgtagttgg 96336 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,733,528 Number of Sequences: 3902068 Number of extensions: 4733528 Number of successful extensions: 91476 Number of sequences better than 10.0: 69 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 91183 Number of HSP's gapped (non-prelim): 284 length of query: 545 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 522 effective length of database: 17,143,297,704 effective search space: 8948801401488 effective search space used: 8948801401488 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)