ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbags5a07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_483192.1| Oryza sativa (japonica cultivar-group), mRNA 202 7e-49
2dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clon... 202 7e-49
3gb|AY110296.1| Zea mays CL11152_1 mRNA sequence 167 4e-38
4dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
5dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic D... 149 9e-33
6gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome... 125 1e-25
7dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 125 1e-25
8gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker 64 4e-07
9gb|DQ207725.1| Zea mays cultivar inbred line Mo17 IDP525 marker 56 1e-04
10gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence 42 1.5
11emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromo... 40 6.1
12emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplo... 40 6.1
13emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromo... 40 6.1
14emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromo... 40 6.1
15gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome... 40 6.1
16emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chro... 40 6.1
17emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chrom... 40 6.1
18gb|AC146195.3| Pan troglodytes BAC clone RP43-25F5 from 7, compl... 40 6.1
19gb|AC099798.4| Homo sapiens BAC clone RP11-559E21 from 7, comple... 40 6.1
20gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, com... 40 6.1
21emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chr... 40 6.1
22emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on ch... 40 6.1
23emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signall... 40 6.1
24emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete... 40 6.1
25gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence 40 6.1
26gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete se... 40 6.1
27gb|DP000062.1| Sus scrofa target 117 genomic scaffold 40 6.1
28dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, ... 40 6.1
29gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, comple... 40 6.1
30gb|AC092027.3| Homo sapiens BAC clone RP11-438N22 from 7, comple... 40 6.1
31gb|AC012568.7| Homo sapiens chromosome 15, clone RP11-342M21, co... 40 6.1
32gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosom... 40 6.1
33emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complet... 40 6.1
34dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signal... 40 6.1
35gb|AC010130.12| Homo sapiens BAC clone RP11-95O9 from 2, complet... 40 6.1
36gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence 40 6.1
37gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence 40 6.1
38emb|AJ544894.1|TNI544894 Tetraodon nigroviridis crfb8 gene for h... 40 6.1
39gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence 40 6.1
40gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complet... 40 6.1
41gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromos... 40 6.1
42emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chro... 40 6.1
43emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chro... 40 6.1 
>ref|XM_483192.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2237

 Score =  202 bits (102), Expect = 7e-49
 Identities = 225/266 (84%)
 Strand = Plus / Minus

                                                                        
Query: 183  gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 242
            |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2013 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 1954

                                                                        
Query: 243  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 302
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 1953 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 1894

                                                                        
Query: 303  atcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 362
            ||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 1893 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 1834

                                                                        
Query: 363  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 422
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 1833 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 1774

                                      
Query: 423  attttgaagagtgtttgaagtgcaga 448
            || || |||||||||||||| |||||
Sbjct: 1773 atcttaaagagtgtttgaagagcaga 1748
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>dbj|AK101328.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034G12, full
            insert sequence
          Length = 2575

 Score =  202 bits (102), Expect = 7e-49
 Identities = 225/266 (84%)
 Strand = Plus / Minus

                                                                        
Query: 183  gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 242
            |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 2350 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 2291

                                                                        
Query: 243  agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 302
            |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 2290 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 2231

                                                                        
Query: 303  atcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttggaaatgcgga 362
            ||||  || ||||||||||| ||||||||||| ||| |||| ||||||||||| || |||
Sbjct: 2230 atcagttcaaggacctccattgcagctttgtagttcgccacactcctttggaactgtgga 2171

                                                                        
Query: 363  ttggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcacattcttgata 422
            |||| ||| |||| ||| || ||    || || |  |||| |||||||||||||||||| 
Sbjct: 2170 ttggacttacgcagtctcctgtacttgatatcatgtgggtgctctatcacattcttgatg 2111

                                      
Query: 423  attttgaagagtgtttgaagtgcaga 448
            || || |||||||||||||| |||||
Sbjct: 2110 atcttaaagagtgtttgaagagcaga 2085
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>gb|AY110296.1| Zea mays CL11152_1 mRNA sequence
          Length = 1213

 Score =  167 bits (84), Expect = 4e-38
 Identities = 222/268 (82%)
 Strand = Plus / Minus

                                                                       
Query: 174 ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 233
           |||||||||||||  || || |||||||| ||||| || ||||| ||||| |||||||| 
Sbjct: 903 ttttatcaagccagagagacctcaagggatgactttgccagccatagcaatccaggatca 844

                                                                       
Query: 234 ttcctcttcagcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcg 293
           ||||| ||||  |||||||| ||||| |||||||||| |||||| ||||  |||||||| 
Sbjct: 843 ttccttttcaataccaggtaagtctcagcacgcccaacctcatctgagattacatcctca 784

                                                                       
Query: 294 cagaagccaatcaactcgaggacctccatcgcagctttgtaattcaccacgctcctttgg 353
           ||||| |||||||| || || |||||||| |||||||| || ||  | ||||||||||||
Sbjct: 783 cagaaaccaatcaattcaagaacctccattgcagctttatagtttgctacgctcctttgg 724

                                                                       
Query: 354 aaatgcggattggtcttgcgcaatcttctataacgaatgtcgttcgggttctctatcaca 413
           ||||| ||||||| ||| ||||||||  ||||   |||||| || || | |||||| |||
Sbjct: 723 aaatgtggattggacttacgcaatctcttatacttaatgtcatttggatgctctataaca 664

                                       
Query: 414 ttcttgataattttgaagagtgtttgaa 441
           ||||||||||| || ||||| |||||||
Sbjct: 663 ttcttgataatcttaaagagagtttgaa 636
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  149 bits (75), Expect = 9e-33
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                            
Query: 183      gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 242
                |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24723752 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24723693

                                                                            
Query: 243      agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 302
                |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24723692 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24723633

                                           
Query: 303      atcaactcgaggacctccatcgcagct 329
                ||||  || ||||||||||| ||||||
Sbjct: 24723632 atcagttcaaggacctccattgcagct 24723606



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                                  
Query: 399      gggttctctatcacattcttgataattttgaagagtgtttgaagtgcaga 448
                |||| |||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 24723344 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcaga 24723295
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>dbj|AP003892.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1345_D02
          Length = 159613

 Score =  149 bits (75), Expect = 9e-33
 Identities = 129/147 (87%)
 Strand = Plus / Minus

                                                                         
Query: 183   gccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttc 242
             |||||||| |||||||| |||| ||| |||||||||||||| |||||||||||||| |||
Sbjct: 24553 gccatggaaacttcaagagaggcctttgcaagccacagcaagccaggatcgttccttttc 24494

                                                                         
Query: 243   agcaccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagcca 302
             |  |||| ||| ||||| ||||| |||||||||||||||||||||||||| ||||| |||
Sbjct: 24493 aataccaagtaagtctctgcacgaccaatctcatccgagacgacatcctcacagaaacca 24434

                                        
Query: 303   atcaactcgaggacctccatcgcagct 329
             ||||  || ||||||||||| ||||||
Sbjct: 24433 atcagttcaaggacctccattgcagct 24407



 Score = 60.0 bits (30), Expect = 7e-06
 Identities = 45/50 (90%)
 Strand = Plus / Minus

                                                               
Query: 399   gggttctctatcacattcttgataattttgaagagtgtttgaagtgcaga 448
             |||| |||||||||||||||||| || || |||||||||||||| |||||
Sbjct: 24145 gggtgctctatcacattcttgatgatcttaaagagtgtttgaagagcaga 24096
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>gb|AC115634.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1653_D06,
             complete sequence
          Length = 71193

 Score =  125 bits (63), Expect = 1e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                         
Query: 187   tggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagca 246
             |||| |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |
Sbjct: 27043 tggaaacttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaata 26984

                                                                         
Query: 247   ccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatca 306
             ||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 26983 ccaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatca 26924

                                    
Query: 307   actcgaggacctccatcgcagct 329
             | || |||| |||||| ||||||
Sbjct: 26923 attcaaggaactccattgcagct 26901



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                         
Query: 399   gggttctctatcacattcttgataat-tttgaagagtgtttgaa 441
             |||| |||||||||||||||||| || ||  |||||||||||||
Sbjct: 24688 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaa 24645
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  125 bits (63), Expect = 1e-25
 Identities = 123/143 (86%)
 Strand = Plus / Minus

                                                                            
Query: 187      tggatacttcaagggaggacttcgcaagccacagcaacccaggatcgttcctcttcagca 246
                |||| |||||||| |||||||| ||||||||| |||| | |||||||||||| ||||  |
Sbjct: 10810111 tggaaacttcaagagaggactttgcaagccacggcaagctaggatcgttccttttcaata 10810052

                                                                            
Query: 247      ccaggtaggtctccgcacgcccaatctcatccgagacgacatcctcgcagaagccaatca 306
                ||| ||| ||||| ||||| ||||||||||||||||| |||||||| ||||| |||||||
Sbjct: 10810051 ccaagtaagtctctgcacgaccaatctcatccgagacaacatcctcacagaaaccaatca 10809992

                                       
Query: 307      actcgaggacctccatcgcagct 329
                | || |||| |||||| ||||||
Sbjct: 10809991 attcaaggaactccattgcagct 10809969



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 39/44 (88%), Gaps = 1/44 (2%)
 Strand = Plus / Minus

                                                            
Query: 399      gggttctctatcacattcttgataat-tttgaagagtgtttgaa 441
                |||| |||||||||||||||||| || ||  |||||||||||||
Sbjct: 10807756 gggtgctctatcacattcttgatgatcttaaaagagtgtttgaa 10807713
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>gb|DQ207724.1| Zea mays cultivar B73 IDP525 marker
          Length = 286

 Score = 63.9 bits (32), Expect = 4e-07
 Identities = 68/80 (85%)
 Strand = Plus / Plus

                                                                       
Query: 174 ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 233
           |||||||||||||  || || |||||||||||||| || ||||| ||||| |||||||| 
Sbjct: 203 ttttatcaagccagagagacctcaagggaggactttgccagccatagcaatccaggatca 262

                               
Query: 234 ttcctcttcagcaccaggta 253
           ||||| ||||  ||||||||
Sbjct: 263 ttccttttcaataccaggta 282
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>gb|DQ207725.1| Zea mays cultivar inbred line Mo17 IDP525 marker
          Length = 406

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                       
Query: 174 ttttatcaagccatggatacttcaagggaggacttcgcaagccacagcaacccaggatcg 233
           |||||||||||||  || || |||||||| ||||| || ||||| ||||| |||||||| 
Sbjct: 326 ttttatcaagccagagagacctcaagggatgactttgccagccatagcaatccaggatca 385

                               
Query: 234 ttcctcttcagcaccaggta 253
           ||||| ||||  ||||||||
Sbjct: 386 ttccttttcaataccaggta 405
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>gb|AY312423.1| Otus elegans clone Oe050 microsatellite sequence
          Length = 500

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 422 aattttgaagagtgtttgaag 442
           |||||||||||||||||||||
Sbjct: 162 aattttgaagagtgtttgaag 142
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>emb|CR956647.7| Pig DNA sequence from clone CH242-38B5 on chromosome 4, complete sequence
          Length = 131053

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    agccacagcaacccaggatc 232
              ||||||||||||||||||||
Sbjct: 114977 agccacagcaacccaggatc 114996
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>emb|AJ131112.2|SSC131112 Sus scrofa MHC class I SLA genes, haplotype H01, clone BAC 490B10
          Length = 154782

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    agccacagcaacccaggatc 232
              ||||||||||||||||||||
Sbjct: 114031 agccacagcaacccaggatc 114012
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>emb|CR974460.5| Pig DNA sequence from clone PigE-150I6 on chromosome 7, complete
             sequence
          Length = 122162

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 76694 agccacagcaacccaggatc 76713
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>emb|CT009560.9| Pig DNA sequence from clone CH242-4C12 on chromosome 17, complete
             sequence
          Length = 166118

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 29160 agccacagcaacccaggatc 29141
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>gb|AC127228.3| Mus musculus BAC clone RP24-539P4 from chromosome 7, complete sequence
          Length = 164223

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 415    tcttgataattttgaagagtgttt 438
              |||||| |||||||||||||||||
Sbjct: 105946 tcttgagaattttgaagagtgttt 105969
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>emb|CR956396.6| Pig DNA sequence from clone CH242-205N12 on chromosome 7, complete
              sequence
          Length = 175108

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    agccacagcaacccaggatc 232
              ||||||||||||||||||||
Sbjct: 162018 agccacagcaacccaggatc 162037
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>emb|CR956410.6| Pig DNA sequence from clone PigE-123H20 on chromosome 7, complete
              sequence
          Length = 175487

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 213    agccacagcaacccaggatc 232
              ||||||||||||||||||||
Sbjct: 144535 agccacagcaacccaggatc 144516
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>gb|AC146195.3| Pan troglodytes BAC clone RP43-25F5 from 7, complete sequence
          Length = 170968

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 21   tatacaattgtgaaggctgacaaa 44
            ||||||||||||||||||| ||||
Sbjct: 1102 tatacaattgtgaaggctgtcaaa 1125
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>gb|AC099798.4| Homo sapiens BAC clone RP11-559E21 from 7, complete sequence
          Length = 131328

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 21   tatacaattgtgaaggctgacaaa 44
            ||||||||||||||||||| ||||
Sbjct: 3096 tatacaattgtgaaggctgtcaaa 3119
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>gb|AC119851.9| Mus musculus chromosome 7, clone RP23-106N20, complete sequence
          Length = 226307

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 415   tcttgataattttgaagagtgttt 438
             |||||| |||||||||||||||||
Sbjct: 23286 tcttgagaattttgaagagtgttt 23309
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>emb|AL590809.5| Human DNA sequence from clone RP11-733H21 on chromosome Xq23-24,
             complete sequence
          Length = 105329

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 233   gttcctcttcagcaccaggt 252
             ||||||||||||||||||||
Sbjct: 25779 gttcctcttcagcaccaggt 25760
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>emb|AL160395.24| Human DNA sequence from clone RP11-474D23 on chromosome 13q33.1-34
              Contains a the 3' end of a novel gene (MGC35169) and 2 CpG
              islands, complete sequence
          Length = 179959

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 414    ttcttgataattttgaagag 433
              ||||||||||||||||||||
Sbjct: 126184 ttcttgataattttgaagag 126203
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>emb|AJ427478.2|SSC427478 Sus scrofa ASIP gene for agouti signalling protein and AHCY gene for
              S-adenosylhomocysteine hydrolase
          Length = 204138

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    agccacagcaacccaggatc 232
              ||||||||||||||||||||
Sbjct: 148219 agccacagcaacccaggatc 148238
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>emb|CR853303.6| Pig DNA sequence from clone PigE-173F2, complete sequence
          Length = 151259

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 76526 agccacagcaacccaggatc 76545



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 213  agccacagcaacccaggatc 232
            ||||||||||||||||||||
Sbjct: 7098 agccacagcaacccaggatc 7117
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>gb|AC091723.3| Sus scrofa clone RP44-349L7, complete sequence
          Length = 76665

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 213  agccacagcaacccaggatc 232
            ||||||||||||||||||||
Sbjct: 6678 agccacagcaacccaggatc 6659
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>gb|AF067624.1| Caenorhabditis elegans cosmid M01B12, complete sequence
          Length = 34907

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 423   attttgaagagtgtttgaag 442
             ||||||||||||||||||||
Sbjct: 30944 attttgaagagtgtttgaag 30963
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>gb|DP000062.1| Sus scrofa target 117 genomic scaffold
          Length = 605739

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 213    agccacagcaacccaggatc 232
              ||||||||||||||||||||
Sbjct: 346739 agccacagcaacccaggatc 346758
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>dbj|AB158488.1| Sus scrofa TRIM39, FLJ22638, GNL1, CAT56 genes, SLA-11 pseudogene,
             complete cds
          Length = 147386

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 15925 agccacagcaacccaggatc 15906
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>gb|AC114796.3| Homo sapiens BAC clone RP11-700B17 from 4, complete sequence
          Length = 39786

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 415   tcttgataattttgaagagt 434
             ||||||||||||||||||||
Sbjct: 22531 tcttgataattttgaagagt 22550
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>gb|AC092027.3| Homo sapiens BAC clone RP11-438N22 from 7, complete sequence
          Length = 17521

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 21   tatacaattgtgaaggctgacaaa 44
            ||||||||||||||||||| ||||
Sbjct: 3096 tatacaattgtgaaggctgtcaaa 3119
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>gb|AC012568.7| Homo sapiens chromosome 15, clone RP11-342M21, complete sequence
          Length = 166785

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 36     gctgacaaacaacaccacag 55
              ||||||||||||||||||||
Sbjct: 101655 gctgacaaacaacaccacag 101636
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>gb|AC159001.2| Mus musculus BAC clone RP24-221A23 from chromosome 9, complete sequence
          Length = 161507

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 118   tgaaatgtcatgatatacag 137
             ||||||||||||||||||||
Sbjct: 24000 tgaaatgtcatgatatacag 23981
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>emb|BX296548.20| Pig DNA sequence from clone PigE-193I9, complete sequence
          Length = 172252

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 82183 agccacagcaacccaggatc 82202
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>dbj|AB206998.1| Sus scrofa ASIP and AHCY genes for agouti signaling protein and
             S-adenosylhomocysteine hydrolase, complete cds
          Length = 127234

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 29241 agccacagcaacccaggatc 29260
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>gb|AC010130.12| Homo sapiens BAC clone RP11-95O9 from 2, complete sequence
          Length = 105133

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 10    tatatcttggatatacaatt 29
             ||||||||||||||||||||
Sbjct: 57507 tatatcttggatatacaatt 57488
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>gb|AC092875.2| Sus scrofa clone RP44-476K1, complete sequence
          Length = 155710

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 24945 agccacagcaacccaggatc 24926
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>gb|DQ020488.1| Sus scrofa clone BAC KNP_798F4, complete sequence
          Length = 125904

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 68226 agccacagcaacccaggatc 68245
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>emb|AJ544894.1|TNI544894 Tetraodon nigroviridis crfb8 gene for helical cytokine receptor
            CRFB8, exons 1-8
          Length = 15197

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   aacaacaccacagtttcatg 62
            ||||||||||||||||||||
Sbjct: 6832 aacaacaccacagtttcatg 6813
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>gb|AC104483.2| Sus scrofa clone RP44-427G13, complete sequence
          Length = 93393

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 47778 agccacagcaacccaggatc 47759
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>gb|AC157575.1| Mus musculus BAC clone RP23-16D16 from 9, complete sequence
          Length = 196682

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 118  tgaaatgtcatgatatacag 137
            ||||||||||||||||||||
Sbjct: 3700 tgaaatgtcatgatatacag 3719
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>gb|AC172370.2| Gallus gallus BAC clone CH261-119J18 from chromosome ul, complete
             sequence
          Length = 260878

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 179   tcaagccatggatacttcaaggga 202
             |||||||| |||||||||||||||
Sbjct: 27561 tcaagccaaggatacttcaaggga 27538
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>emb|CR956648.9| Pig DNA sequence from clone CH242-155F23 on chromosome 17, complete
             sequence
          Length = 168798

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 57612 agccacagcaacccaggatc 57593
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>emb|CR974587.14| Pig DNA sequence from clone CH242-288P9 on chromosome 7, complete
             sequence
          Length = 165092

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 213   agccacagcaacccaggatc 232
             ||||||||||||||||||||
Sbjct: 19794 agccacagcaacccaggatc 19775


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,469,921
Number of Sequences: 3902068
Number of extensions: 3469921
Number of successful extensions: 65737
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 65511
Number of HSP's gapped (non-prelim): 225
length of query: 450
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 428
effective length of database: 17,147,199,772
effective search space: 7339001502416
effective search space used: 7339001502416
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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