>MODU_DROME (P13469) DNA-binding protein modulo|
          Length = 542

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 20/79 (25%), Positives = 36/79 (45%)
 Frame = -2

Query: 514 KSKPLPEERSDLSPSPIQAPVTPKAAHVDSPKSPMKPEQQYQLDPDSEFANLGGDFGKDG 335
           + KPL +  +  +    +  V P++    S K P+K   Q+  + +S+      +   D 
Sbjct: 18  EEKPLAKRVTKSTKVQEEETVVPQSPSKKSRKQPVKEVPQFSEEDESDVEEQNDEQPGDD 77

Query: 334 KDYSGEEISGWEFDELEEE 278
            D+  EE +G   DE EE+
Sbjct: 78  SDFETEEAAGLIDDEAEED 96

>TOP2_PEA (O24308) DNA topoisomerase 2 (EC 5.99.1.3) (DNA topoisomerase II)|
            (PsTopII)
          Length = 1462

 Score = 33.5 bits (75), Expect = 0.52
 Identities = 20/82 (24%), Positives = 37/82 (45%)
 Frame = -2

Query: 520  THKSKPLPEERSDLSPSPIQAPVTPKAAHVDSPKSPMKPEQQYQLDPDSEFANLGGDFGK 341
            T K+K +  E  + S     A    K A V  PK    P++  Q +P+ +  +L      
Sbjct: 1178 TKKAKSVEPENDNSSMEIENAVEAAKPAEVAKPKGRAAPKKNIQKEPEDDIQSLQERLAA 1237

Query: 340  DGKDYSGEEISGWEFDELEEES 275
               + SGE+    E +E+++++
Sbjct: 1238 YNIESSGEKSQAMESEEVQQKA 1259

>ETS6_DROME (P29776) DNA-binding protein D-ETS-6|
          Length = 475

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 25/69 (36%), Positives = 32/69 (46%)
 Frame = +1

Query: 205 HMSVWETESSSFGLPDSDDVSAFSSPLQAHQTPTR*SPRLSNLCHPFQSLLPGLQIQNQD 384
           H S   + SSS G P S   S+ +SP QA   P   S   SN   PFQ    G+     D
Sbjct: 399 HHSSPASNSSSLGFPSSSTASSQASPGQA---PASSSASTSNFTAPFQGGTAGV-----D 450

Query: 385 PADTAAQAS 411
           PA T+  ++
Sbjct: 451 PARTSTSSA 459

>ZN358_HUMAN (Q9NW07) Zinc finger protein 358|
          Length = 481

 Score = 32.7 bits (73), Expect = 0.88
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = -2

Query: 511 SKPLPEERSDLSPSPIQAPVTPKAAHVDSPKSPMKPEQQYQLDPDSE 371
           SKPLP  RS  SP+P+++   PKA H   P     P+      PD +
Sbjct: 389 SKPLPGSRSTPSPTPVESS-DPKAGHDAGPDLVPSPDLDPVPSPDPD 434

>TONB_HAEDU (O51810) Protein tonB|
          Length = 279

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -2

Query: 499 PEERSDLSPSPIQAPVT-PKAAHVDSPKSPMKPEQQYQLDPDSEFA 365
           PE   D  P PI  P+  PK    + PK P KP+++ + +   E A
Sbjct: 75  PEPEPDAIPEPITKPIEKPKEKPKEKPKKPEKPKEKLKKEKPKEKA 120

>ENL2_ARATH (Q9T076) Early nodulin-like protein 2 precursor (Phytocyanin-like|
           protein)
          Length = 349

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 505 PLPEERSDLSPSPIQAPVTPKAAHVDSPKSPMKPEQQYQLDPDS 374
           P+    S  +P    +PV+P +A + SP +PM P+    + P S
Sbjct: 210 PVSPTTSPPAPPKSTSPVSPSSAPMTSPPAPMAPKSSSTIPPSS 253

>HXA9_MOUSE (P09631) Homeobox protein Hox-A9 (Hox-1.7)|
          Length = 271

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 4/66 (6%)
 Frame = +1

Query: 112 ATALPRLQGVQSNDPYIHPTVHISLALQNWRHMSVWETES----SSFGLPDSDDVSAFSS 279
           A A+P       + PY+HP   ++ A  + R+M  W   +    S  GLP S        
Sbjct: 75  ANAVPAAVYHHHHHPYVHPQAPVAAAAPDGRYMRSWLEPTPGALSFAGLPSSRPYGIKPE 134

Query: 280 PLQAHQ 297
           PL A +
Sbjct: 135 PLSARR 140

>RS4E_AERPE (Q9YF85) 30S ribosomal protein S4e|
          Length = 253

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -2

Query: 526 LKTHKSKPLPEERSDLSPSPIQAPVTPKAAHV 431
           +K  K  P+PEE  DL P  I+   T K  HV
Sbjct: 107 VKFFKLHPIPEEEGDLKPVRIENKTTVKGGHV 138

>IF4G1_HUMAN (Q04637) Eukaryotic translation initiation factor 4 gamma 1|
           (eIF-4-gamma 1) (eIF-4G1) (eIF-4G 1) (p220)
          Length = 1600

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 19/47 (40%), Positives = 24/47 (51%)
 Frame = -2

Query: 511 SKPLPEERSDLSPSPIQAPVTPKAAHVDSPKSPMKPEQQYQLDPDSE 371
           SKP+PE     S SP+QAP TP A+H      P        L+P+ E
Sbjct: 332 SKPVPESE--FSSSPLQAP-TPLASHTVEIHEPNGMVPSEDLEPEVE 375

>MYBA2_ORYSA (Q4JL76) Myb-related protein MYBAS2|
          Length = 242

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -2

Query: 523 KTHKSKPLPEERSDLSPSPIQAPVTPKAAHVDSPKSPMKPEQQ 395
           +TH  K   E +S++SPS   + +T ++ H ++P   +  E+Q
Sbjct: 105 RTHMRKKAQERKSNMSPSSSSSSLTYQSCHPETPSMIIGIEEQ 147

>GLC8_YEAST (P41818) Protein GLC8|
          Length = 229

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
 Frame = -2

Query: 511 SKPLPEERSDLSPSPI-QAPVTPKA---AHVDSPKSPMKPEQQYQLDPDSEFANLGGDFG 344
           +K  PEER   +   + +  +T K     H+D PK+P     Q  +DP  E+  +  D  
Sbjct: 83  AKMTPEERVQWNQRNLAENEITKKQFQDIHIDEPKTPY----QGAVDPHGEYYRVDDDED 138

Query: 343 KDGKDYSGEEISGWEFDEL 287
           +D  D    +++  + D+L
Sbjct: 139 EDNSDKKPCQVANDDIDDL 157

>RS31_XENLA (P02350) 40S ribosomal protein S3-A (S1A)|
          Length = 246

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 17/45 (37%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 523 KTHKSKPLPEERSDLSPSPIQAPVTP----KAAHVDSPKSPMKPE 401
           K    KPLP+  S + P     P TP    KAA  D P+ P  P+
Sbjct: 197 KIGPKKPLPDHVSIVEPKDEIVPTTPISEQKAAKPDQPQPPAMPQ 241

>PBPA_STRR6 (Q8DR59) Penicillin-binding protein 1A (PBP-1A) (Exported protein|
           2)
          Length = 719

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = +1

Query: 40  VLFSNGQYTCNTSTQHGHGKN------KQIATALPRLQGVQSNDPYIHPTVHISLALQNW 201
           V  SNG Y   T+ Q+ +GK+       Q+A      Q     DPY HP      A Q+ 
Sbjct: 174 VYMSNGNYGMQTAAQNYYGKDLNNLSLPQLALLAGMPQAPNQYDPYSHPE-----AAQDR 228

Query: 202 RHMSVWETESSSF 240
           R++ + E ++  +
Sbjct: 229 RNLVLSEMKNQGY 241

>PBPA_STRPN (Q04707) Penicillin-binding protein 1A (PBP-1A)|
          Length = 719

 Score = 30.0 bits (66), Expect = 5.7
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 6/73 (8%)
 Frame = +1

Query: 40  VLFSNGQYTCNTSTQHGHGKN------KQIATALPRLQGVQSNDPYIHPTVHISLALQNW 201
           V  SNG Y   T+ Q+ +GK+       Q+A      Q     DPY HP      A Q+ 
Sbjct: 174 VYMSNGNYGMQTAAQNYYGKDLNNLSLPQLALLAGMPQAPNQYDPYSHPE-----AAQDR 228

Query: 202 RHMSVWETESSSF 240
           R++ + E ++  +
Sbjct: 229 RNLVLSEMKNQGY 241

>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic|
            chromosome-associated protein) (MCAP)
          Length = 1400

 Score = 29.6 bits (65), Expect = 7.5
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = -2

Query: 508  KPLPEERSDLSPSPIQAPVTPKAAHVDSPKSPMKPEQQ 395
            +P P+++    P P+  P  P +AH+  P  P  P QQ
Sbjct: 986  QPPPQQQHQPPPRPVHLPSMPFSAHIQQPPPP--PGQQ 1021

>LYAM3_BOVIN (P42201) P-selectin precursor (Granule membrane protein 140)|
           (GMP-140) (PADGEM) (Leukocyte-endothelial cell adhesion
           molecule 3) (LECAM3) (CD62P antigen)
          Length = 646

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 15/44 (34%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
 Frame = +2

Query: 146 PTTPIYIQRCTFPW-RFRTGDTCQCGKPNLVVLGCRIRTMCQHS 274
           P T   +  C+ PW  F  G TC    P   +L    RT+CQ +
Sbjct: 524 PVTEPIVMNCSNPWGNFSYGSTCSFHCPEGQLLNGSERTVCQEN 567

>104K_THEAN (Q4U9M9) 104 kDa microneme-rhoptry antigen precursor (p104)|
          Length = 893

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -2

Query: 523 KTHKSKPLPEE-RSDLSPSPIQAPVTPKAAH----VDSPKSPMKPE 401
           K  KS   PE  +S   P   Q PV+PK+      +D PKSP +PE
Sbjct: 579 KKSKSPKRPESPKSPKRPVSPQRPVSPKSPKRPESLDIPKSPKRPE 624

>RS32_XENLA (P47835) 40S ribosomal protein S3-B (S1B)|
          Length = 246

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = -2

Query: 523 KTHKSKPLPEERSDLSPSPIQAPVTP----KAAHVDSPKSPMKPE 401
           K    KPLP+  S + P     P TP    K A  D P+ P+ P+
Sbjct: 197 KIGPKKPLPDHVSIVEPKDEIVPTTPISEQKGAKPDQPQPPVMPQ 241

>YRB3_CAEEL (Q09400) Hypothetical protein F58F12.3|
          Length = 463

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 11/20 (55%), Positives = 16/20 (80%)
 Frame = -1

Query: 482 LEPFAYPSTCYPQSCARRLP 423
           +E FAYPS CY +S A+++P
Sbjct: 174 VEYFAYPSQCYEKSFAQKIP 193

>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein|
           19)
          Length = 952

 Score = 29.3 bits (64), Expect = 9.8
 Identities = 22/62 (35%), Positives = 30/62 (48%)
 Frame = -2

Query: 460 APVTPKAAHVDSPKSPMKPEQQYQLDPDSEFANLGGDFGKDGKDYSGEEISGWEFDELEE 281
           AP    + H + P    + EQ+  LDP+ E A++ G     GK    EE    E +E EE
Sbjct: 662 APQKKDSQH-EQPAEKAEVEQETVLDPEGEKASVEGAEASTGKMEEEEE----EEEEEEE 716

Query: 280 ES 275
           ES
Sbjct: 717 ES 718


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,538,828
Number of Sequences: 219361
Number of extensions: 1983922
Number of successful extensions: 6403
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 5949
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6386
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5653129581
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)